==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 21-MAY-05 2CSF . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7296.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 44.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 129 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.0 -23.5 5.8 0.3 2 2 A S - 0 0 122 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.767 360.0-167.5 -90.7 105.9 -19.7 5.9 -0.4 3 3 A S + 0 0 122 -2,-0.9 2,-0.2 2,-0.1 0, 0.0 -0.814 39.5 79.8 -97.2 127.8 -18.6 9.5 -0.9 4 4 A G S S- 0 0 68 -2,-0.5 2,-0.7 0, 0.0 -2,-0.0 -0.487 79.2 -86.7 147.0 142.4 -15.2 10.2 -2.3 5 5 A S + 0 0 136 -2,-0.2 -2,-0.1 1,-0.1 0, 0.0 -0.606 51.4 152.5 -75.2 113.1 -13.2 10.2 -5.5 6 6 A S + 0 0 106 -2,-0.7 -1,-0.1 2,-0.0 3,-0.0 -0.201 17.1 154.4-134.6 42.4 -11.9 6.7 -6.2 7 7 A G - 0 0 50 1,-0.1 2,-0.5 3,-0.0 -2,-0.0 -0.385 53.7 -95.4 -74.3 151.2 -11.6 6.6 -10.0 8 8 A P - 0 0 126 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.529 42.0-114.4 -69.7 115.7 -9.2 4.2 -11.7 9 9 A I - 0 0 113 -2,-0.5 3,-0.1 72,-0.1 72,-0.0 -0.310 38.9-114.4 -53.5 109.9 -5.9 6.1 -12.4 10 10 A K - 0 0 177 -2,-0.3 -1,-0.1 1,-0.1 2,-0.0 0.001 43.7 -80.4 -44.1 151.3 -5.8 6.2 -16.2 11 11 A V - 0 0 128 1,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.319 45.6-179.7 -59.6 135.1 -3.0 4.2 -17.8 12 12 A D > - 0 0 108 1,-0.4 3,-1.5 -3,-0.1 2,-0.1 -0.269 39.3-116.6-132.6 46.8 0.4 6.1 -17.8 13 13 A G T 3 S- 0 0 73 1,-0.2 -1,-0.4 3,-0.0 3,-0.0 -0.350 74.5 -34.4 58.4-123.0 2.7 3.6 -19.5 14 14 A A T 3 S+ 0 0 86 -2,-0.1 2,-0.5 -3,-0.1 -1,-0.2 -0.230 106.6 106.8-127.0 43.1 5.4 2.6 -17.0 15 15 A N < - 0 0 129 -3,-1.5 2,-0.5 2,-0.0 -1,-0.0 -0.853 44.8-173.9-127.3 96.3 5.9 5.7 -15.0 16 16 A I - 0 0 41 -2,-0.5 2,-0.8 1,-0.0 62,-0.0 -0.773 15.2-146.5 -93.2 129.3 4.5 5.6 -11.5 17 17 A N - 0 0 120 -2,-0.5 2,-0.4 60,-0.0 -2,-0.0 -0.821 14.0-158.2 -98.5 103.5 4.5 8.8 -9.4 18 18 A I - 0 0 7 -2,-0.8 2,-0.3 3,-0.0 56,-0.1 -0.661 14.1-177.7 -83.6 130.9 5.0 7.9 -5.7 19 19 A T > - 0 0 74 -2,-0.4 3,-2.9 1,-0.1 4,-0.3 -0.907 43.4-106.5-128.2 156.0 3.9 10.6 -3.2 20 20 A A T >> S+ 0 0 53 -2,-0.3 3,-2.4 1,-0.3 4,-0.6 0.824 113.9 74.9 -46.4 -35.2 4.0 10.9 0.6 21 21 A A H >> S+ 0 0 50 1,-0.3 4,-2.1 2,-0.2 3,-0.9 0.827 73.9 81.2 -48.3 -34.9 0.2 10.2 0.5 22 22 A I H <> S+ 0 0 2 -3,-2.9 4,-1.5 1,-0.3 -1,-0.3 0.828 88.3 55.6 -40.7 -39.0 1.1 6.6 -0.2 23 23 A Y H <> S+ 0 0 2 -3,-2.4 4,-1.6 -4,-0.3 -1,-0.3 0.936 106.7 47.9 -62.2 -48.4 1.6 6.3 3.5 24 24 A D H XX S+ 0 0 86 -3,-0.9 4,-2.1 -4,-0.6 3,-0.6 0.946 107.6 54.9 -58.0 -51.5 -1.9 7.5 4.3 25 25 A E H 3X S+ 0 0 88 -4,-2.1 4,-2.8 1,-0.3 -1,-0.2 0.853 106.8 53.1 -51.1 -37.6 -3.5 5.2 1.8 26 26 A I H 3X S+ 0 0 0 -4,-1.5 4,-1.4 -5,-0.3 -1,-0.3 0.872 106.3 52.7 -67.0 -37.8 -1.8 2.3 3.5 27 27 A Q H S+ 0 0 16 -4,-1.4 5,-2.2 2,-0.2 4,-1.8 0.953 112.2 42.3 -62.5 -52.0 -5.7 -1.6 6.5 31 31 A K H <5S+ 0 0 127 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.767 118.0 49.2 -66.4 -25.3 -8.8 -0.4 8.3 32 32 A R H <5S+ 0 0 137 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.844 119.0 35.9 -81.8 -36.8 -10.8 -0.8 5.1 33 33 A A H <5S- 0 0 7 -4,-2.9 -2,-0.2 -5,-0.3 -3,-0.2 0.569 108.6-123.4 -91.2 -11.7 -9.5 -4.3 4.4 34 34 A K T <5 + 0 0 153 -4,-1.8 2,-0.2 -5,-0.2 -3,-0.2 0.912 68.0 124.9 69.7 44.0 -9.5 -5.2 8.1 35 35 A V < - 0 0 32 -5,-2.2 2,-0.2 -6,-0.2 -1,-0.2 -0.703 55.7-113.1-125.4 177.7 -5.8 -6.1 8.1 36 36 A S > - 0 0 53 -2,-0.2 4,-2.3 -3,-0.1 5,-0.4 -0.674 34.3-101.8-110.9 166.4 -2.7 -5.2 10.0 37 37 A Q H > S+ 0 0 50 1,-0.2 4,-1.5 -2,-0.2 5,-0.1 0.826 123.9 53.9 -54.1 -33.0 0.5 -3.4 9.0 38 38 A A H > S+ 0 0 31 2,-0.2 4,-1.0 3,-0.2 -1,-0.2 0.926 112.3 41.7 -68.5 -46.3 2.2 -6.9 8.9 39 39 A L H >> S+ 0 0 20 2,-0.2 4,-2.3 1,-0.2 3,-1.3 0.991 115.6 46.4 -64.6 -63.3 -0.4 -8.3 6.5 40 40 A F H 3X S+ 0 0 0 -4,-2.3 4,-1.6 1,-0.3 5,-0.3 0.859 118.3 45.1 -47.5 -40.0 -0.8 -5.4 4.2 41 41 A A H 3X>S+ 0 0 0 -4,-1.5 6,-2.7 -5,-0.4 5,-1.1 0.708 111.7 53.2 -77.8 -21.1 3.0 -5.2 4.1 42 42 A K H <<5S+ 0 0 78 -3,-1.3 -2,-0.2 -4,-1.0 -1,-0.2 0.739 119.0 33.6 -84.2 -25.5 3.2 -9.0 3.6 43 43 A V H <5S+ 0 0 22 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.608 125.9 42.3-102.3 -18.3 0.8 -8.9 0.6 44 44 A A H <5S- 0 0 10 -4,-1.6 -3,-0.2 -5,-0.4 -2,-0.1 0.922 141.5 -2.3 -90.9 -64.9 1.9 -5.6 -0.7 45 45 A A T <5S- 0 0 19 -4,-0.7 -3,-0.2 -5,-0.3 -4,-0.1 0.497 89.6-126.2-105.5 -9.2 5.7 -5.5 -0.5 46 46 A N < + 0 0 117 -5,-1.1 -4,-0.3 -6,-0.2 2,-0.1 0.799 66.4 133.0 67.2 29.0 6.0 -8.9 1.2 47 47 A K - 0 0 92 -6,-2.7 2,-0.3 1,-0.1 -1,-0.2 -0.384 61.8 -85.9-101.3-178.3 8.0 -7.3 4.0 48 48 A S >> - 0 0 91 -2,-0.1 3,-2.4 1,-0.1 4,-1.2 -0.687 37.6-110.9 -92.8 143.8 7.8 -7.6 7.8 49 49 A Q H >> S+ 0 0 88 -2,-0.3 4,-2.8 1,-0.3 3,-1.7 0.862 117.8 62.1 -33.8 -56.9 5.5 -5.4 9.9 50 50 A G H 3> S+ 0 0 39 1,-0.3 4,-1.9 2,-0.2 -1,-0.3 0.846 101.8 51.7 -40.3 -44.2 8.5 -3.6 11.3 51 51 A W H <> S+ 0 0 32 -3,-2.4 4,-1.0 2,-0.2 -1,-0.3 0.842 117.5 39.1 -64.4 -33.9 9.3 -2.5 7.8 52 52 A L H X>S+ 0 0 98 -4,-1.9 4,-2.8 -5,-0.3 3,-1.2 0.946 101.5 58.7 -52.4 -54.8 8.3 2.5 10.4 55 55 A L H 3X5S+ 0 0 16 -4,-1.0 4,-1.3 1,-0.3 -1,-0.2 0.867 110.7 43.3 -42.8 -44.4 7.1 3.8 7.0 56 56 A L H 3<5S+ 0 0 18 -4,-1.6 -1,-0.3 -3,-0.4 -2,-0.2 0.747 116.9 49.2 -75.0 -24.2 4.0 5.1 8.8 57 57 A R H <<5S+ 0 0 187 -4,-1.5 -2,-0.2 -3,-1.2 -3,-0.2 0.968 127.0 20.5 -78.3 -59.9 6.2 6.3 11.7 58 58 A W H <5S- 0 0 171 -4,-2.8 -3,-0.2 -5,-0.1 -2,-0.2 0.900 80.0-166.8 -76.7 -43.4 8.9 8.2 9.8 59 59 A K << - 0 0 72 -4,-1.3 -4,-0.1 -5,-0.7 -3,-0.1 0.867 18.4-159.4 56.4 38.3 6.9 8.7 6.6 60 60 A E - 0 0 97 1,-0.2 -1,-0.1 -5,-0.1 -2,-0.0 -0.062 28.7 -90.7 -47.2 147.9 10.1 9.8 4.8 61 61 A N - 0 0 100 -3,-0.1 -1,-0.2 1,-0.1 2,-0.1 -0.511 45.0-131.0 -68.8 116.4 9.5 11.8 1.7 62 62 A P + 0 0 5 0, 0.0 -42,-0.2 0, 0.0 -1,-0.1 -0.407 36.8 161.3 -69.7 141.7 9.3 9.3 -1.3 63 63 A S > - 0 0 42 3,-0.2 3,-0.7 -2,-0.1 7,-0.4 -0.990 53.2-111.0-158.9 157.1 11.4 10.1 -4.4 64 64 A P T 3 S+ 0 0 100 0, 0.0 7,-0.0 0, 0.0 3,-0.0 0.470 112.2 67.0 -69.7 -0.3 12.9 8.4 -7.5 65 65 A E T 3 S+ 0 0 179 1,-0.1 2,-0.8 2,-0.0 4,-0.0 0.859 84.0 73.4 -87.4 -41.3 16.3 8.8 -5.9 66 66 A N <> - 0 0 66 -3,-0.7 4,-2.7 1,-0.2 5,-0.4 -0.666 58.4-179.1 -80.0 109.7 15.8 6.4 -3.0 67 67 A R H > S+ 0 0 176 -2,-0.8 4,-3.1 2,-0.2 5,-0.5 0.995 80.4 49.0 -70.5 -67.9 15.9 2.8 -4.4 68 68 A T H > S+ 0 0 100 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.791 126.5 33.8 -42.4 -31.9 15.3 0.8 -1.3 69 69 A L H > S+ 0 0 22 2,-0.1 4,-3.2 3,-0.1 5,-0.4 0.933 120.0 43.6 -89.0 -67.6 12.4 3.1 -0.7 70 70 A W H X S+ 0 0 48 -4,-2.7 4,-1.8 -7,-0.4 -3,-0.2 0.894 114.3 54.6 -44.5 -49.3 11.0 4.0 -4.1 71 71 A E H >X S+ 0 0 108 -4,-3.1 4,-1.5 -5,-0.4 3,-0.9 0.968 114.5 36.5 -49.9 -66.9 11.3 0.4 -5.2 72 72 A N H >X S+ 0 0 37 -4,-0.7 4,-2.0 -5,-0.5 3,-0.6 0.940 116.9 52.6 -52.8 -53.0 9.3 -1.0 -2.3 73 73 A L H 3X S+ 0 0 0 -4,-3.2 4,-1.3 1,-0.2 -1,-0.3 0.756 104.7 60.5 -56.0 -24.0 6.9 2.0 -2.3 74 74 A C H < S+ 0 0 14 -4,-1.1 3,-2.1 1,-0.2 -2,-0.2 0.955 104.4 48.0 -62.1 -52.3 -1.5 -2.8 -4.9 80 80 A L H 3< S+ 0 0 13 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.811 100.3 68.4 -58.9 -30.3 -3.7 0.1 -3.8 81 81 A N T 3< S+ 0 0 76 -4,-1.0 -1,-0.3 -5,-0.1 -2,-0.2 0.693 84.1 98.2 -63.0 -17.7 -4.4 0.8 -7.4 82 82 A L S < S- 0 0 54 -3,-2.1 2,-0.1 -4,-0.4 -3,-0.0 -0.333 87.5 -95.2 -71.7 153.8 -6.3 -2.5 -7.3 83 83 A P >> - 0 0 57 0, 0.0 3,-1.9 0, 0.0 4,-1.8 -0.365 31.0-113.0 -69.8 146.9 -10.1 -2.6 -6.9 84 84 A Q H 3> S+ 0 0 71 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.877 120.6 56.4 -44.9 -45.1 -11.6 -3.0 -3.4 85 85 A H H 3> S+ 0 0 125 2,-0.2 4,-0.8 1,-0.2 -1,-0.3 0.815 111.7 45.0 -58.7 -30.9 -12.9 -6.4 -4.5 86 86 A E H X> S+ 0 0 72 -3,-1.9 4,-2.0 2,-0.2 3,-1.6 0.983 110.9 46.8 -76.4 -67.3 -9.4 -7.3 -5.4 87 87 A R H 3X S+ 0 0 26 -4,-1.8 4,-2.6 1,-0.3 5,-0.2 0.867 111.2 55.7 -41.9 -45.7 -7.4 -6.1 -2.4 88 88 A D H 3X S+ 0 0 57 -4,-2.3 4,-2.2 -5,-0.3 -1,-0.3 0.867 107.2 50.0 -57.5 -38.0 -10.0 -7.8 -0.2 89 89 A V H