==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 21-MAY-05 2CSI . COMPND 2 MOLECULE: RIM BINDING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5741.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 23.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 66.4 -13.9 -24.5 -3.6 2 2 A S + 0 0 124 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.560 360.0 179.7 -77.0 134.2 -11.7 -22.9 -0.9 3 3 A S - 0 0 123 -2,-0.3 3,-0.2 2,-0.0 -1,-0.2 0.868 14.2-163.7 -97.9 -55.1 -11.3 -19.1 -1.1 4 4 A G - 0 0 52 1,-0.1 2,-1.0 2,-0.0 -2,-0.0 0.904 23.1-120.8 66.0 101.1 -9.0 -18.2 1.8 5 5 A S - 0 0 120 3,-0.0 2,-0.5 1,-0.0 -1,-0.1 -0.614 37.1-176.0 -76.3 102.8 -9.1 -14.5 2.7 6 6 A S - 0 0 90 -2,-1.0 36,-0.0 -3,-0.2 35,-0.0 -0.871 47.4 -30.0-105.3 131.5 -5.5 -13.4 2.3 7 7 A G S S- 0 0 34 -2,-0.5 2,-0.4 1,-0.1 35,-0.2 0.206 80.7 -83.9 52.1 176.9 -4.4 -9.8 3.1 8 8 A R E -A 41 0A 84 33,-2.0 33,-2.4 35,-0.1 2,-0.6 -0.962 30.0-124.7-123.0 137.3 -6.8 -6.9 2.8 9 9 A R E -A 40 0A 168 -2,-0.4 61,-1.8 31,-0.2 2,-0.3 -0.686 30.7-167.0 -82.3 117.1 -7.6 -4.8 -0.3 10 10 A M E -AB 39 69A 9 29,-3.0 29,-2.6 -2,-0.6 2,-0.6 -0.799 16.0-133.1-106.3 147.4 -6.9 -1.1 0.3 11 11 A V E -A 38 0A 43 57,-1.7 2,-0.4 -2,-0.3 57,-0.3 -0.879 26.2-118.1-103.4 115.7 -8.0 1.8 -1.9 12 12 A A - 0 0 1 25,-1.9 24,-2.3 -2,-0.6 55,-0.3 -0.297 26.5-169.9 -52.4 105.6 -5.3 4.4 -2.7 13 13 A L S S+ 0 0 61 53,-0.7 2,-0.3 -2,-0.4 -1,-0.2 0.833 74.9 15.6 -68.7 -32.8 -6.8 7.5 -1.2 14 14 A Y S S- 0 0 149 52,-0.6 -1,-0.3 20,-0.1 19,-0.1 -0.983 93.5 -96.8-147.2 131.8 -4.1 9.6 -2.8 15 15 A D - 0 0 69 -2,-0.3 2,-0.3 -3,-0.2 19,-0.3 -0.117 44.0-150.7 -45.4 134.6 -1.7 8.9 -5.6 16 16 A Y - 0 0 7 17,-1.7 -1,-0.1 50,-0.1 19,-0.0 -0.781 17.3-175.9-112.7 157.1 1.7 7.9 -4.3 17 17 A D >>> - 0 0 50 -2,-0.3 4,-2.0 15,-0.1 3,-1.8 -0.774 17.1-165.3-157.0 105.5 5.2 8.3 -5.7 18 18 A P T 345S+ 0 0 3 0, 0.0 6,-0.3 0, 0.0 9,-0.1 0.430 90.2 69.9 -69.8 2.8 8.4 6.9 -4.1 19 19 A R T 345S+ 0 0 197 4,-0.1 13,-0.0 5,-0.1 -3,-0.0 0.572 118.8 11.6 -95.3 -13.0 10.3 9.2 -6.4 20 20 A E T <45S+ 0 0 171 -3,-1.8 -4,-0.0 0, 0.0 0, 0.0 0.619 132.8 40.8-126.7 -56.6 9.2 12.4 -4.6 21 21 A S T <5S+ 0 0 76 -4,-2.0 -2,-0.0 2,-0.1 -5,-0.0 0.963 105.4 70.4 -62.9 -54.2 7.5 11.5 -1.3 22 22 A S S > S+ 0 0 144 -2,-0.7 3,-3.0 1,-0.1 4,-0.6 0.771 80.6 162.3 63.3 25.6 15.5 1.3 -1.7 27 27 A V T 34 + 0 0 37 1,-0.3 34,-0.2 2,-0.2 3,-0.2 0.769 56.8 87.7 -46.2 -27.4 12.4 2.7 -3.5 28 28 A E T 34 S+ 0 0 190 1,-0.3 -1,-0.3 -10,-0.1 -2,-0.1 0.732 96.2 39.8 -46.3 -22.3 13.2 -0.0 -6.1 29 29 A A T <4 S+ 0 0 52 -3,-3.0 32,-0.5 2,-0.1 -1,-0.3 0.784 96.4 95.6 -96.9 -35.9 11.1 -2.2 -3.8 30 30 A E S < S- 0 0 19 -4,-0.6 2,-0.3 30,-0.3 32,-0.2 -0.122 76.6-118.4 -54.8 153.1 8.4 0.3 -3.0 31 31 A L - 0 0 5 30,-2.6 2,-0.8 -14,-0.0 -1,-0.1 -0.766 12.2-144.8 -99.7 143.1 5.2 0.2 -5.0 32 32 A T + 0 0 76 -2,-0.3 2,-0.2 -15,-0.1 -15,-0.1 -0.823 33.8 160.0-109.9 93.8 4.0 3.1 -7.2 33 33 A F - 0 0 1 -2,-0.8 -17,-1.7 -19,-0.1 2,-0.3 -0.520 25.7-136.6-105.8 175.1 0.2 3.3 -7.1 34 34 A C > - 0 0 64 -19,-0.3 3,-1.9 -2,-0.2 2,-0.3 -0.790 43.5 -61.6-127.8 170.9 -2.3 6.0 -7.9 35 35 A T T 3 S+ 0 0 92 1,-0.3 -22,-0.2 -2,-0.3 3,-0.1 -0.342 126.9 12.7 -55.9 112.5 -5.5 7.4 -6.5 36 36 A G T 3 S+ 0 0 36 -24,-2.3 -1,-0.3 1,-0.4 -23,-0.1 -0.045 88.0 137.8 109.9 -31.2 -8.0 4.6 -6.5 37 37 A D < - 0 0 61 -3,-1.9 -25,-1.9 -26,-0.2 2,-0.4 -0.280 52.0-132.5 -52.7 121.6 -5.5 1.8 -7.3 38 38 A I E -A 11 0A 78 -27,-0.2 2,-0.4 -3,-0.1 -27,-0.2 -0.655 24.4-171.4 -82.9 130.3 -6.4 -1.2 -5.1 39 39 A I E -A 10 0A 0 -29,-2.6 -29,-3.0 -2,-0.4 2,-1.0 -0.984 19.5-139.2-127.1 128.7 -3.5 -2.8 -3.2 40 40 A T E -AC 9 54A 38 14,-1.5 14,-1.5 -2,-0.4 -31,-0.2 -0.737 25.3-164.2 -88.4 102.0 -3.6 -6.0 -1.3 41 41 A V E -AC 8 53A 1 -33,-2.4 -33,-2.0 -2,-1.0 2,-0.4 -0.556 3.8-153.5 -86.0 150.4 -1.6 -5.5 1.9 42 42 A F E - C 0 52A 68 10,-2.6 10,-0.5 -35,-0.2 -36,-0.0 -0.985 53.7 -7.9-129.2 125.2 -0.4 -8.4 4.1 43 43 A G S S- 0 0 45 -2,-0.4 9,-0.2 8,-0.1 -35,-0.1 -0.145 91.6 -54.6 84.6 176.0 0.3 -8.2 7.8 44 44 A E S S- 0 0 145 1,-0.2 8,-0.2 7,-0.1 -2,-0.1 -0.310 72.7 -67.8 -85.7 172.5 0.4 -5.2 10.1 45 45 A I - 0 0 73 6,-0.1 6,-0.2 1,-0.1 -1,-0.2 -0.276 54.4-122.9 -60.6 143.6 2.5 -2.1 9.7 46 46 A D - 0 0 69 4,-1.9 -1,-0.1 -3,-0.1 -3,-0.0 -0.237 32.8 -90.9 -81.5 174.2 6.2 -2.5 10.1 47 47 A E S S+ 0 0 199 1,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.883 128.0 50.3 -52.2 -42.0 8.5 -0.7 12.5 48 48 A D S S- 0 0 149 2,-0.1 -1,-0.2 1,-0.0 -3,-0.1 0.978 120.5-104.2 -61.8 -58.7 9.1 2.0 9.9 49 49 A G S S+ 0 0 26 1,-0.2 15,-0.6 15,-0.0 16,-0.3 0.551 76.7 111.7 135.5 33.0 5.4 2.6 9.1 50 50 A F E - D 0 63A 61 13,-0.2 -4,-1.9 14,-0.1 2,-0.3 -0.758 54.3-123.8-125.2 171.8 4.7 0.9 5.8 51 51 A Y E - D 0 62A 25 11,-2.7 11,-2.5 -2,-0.2 2,-0.7 -0.834 11.9-133.5-117.8 156.1 2.6 -2.0 4.5 52 52 A Y E +CD 42 61A 114 -10,-0.5 -10,-2.6 -2,-0.3 2,-0.2 -0.864 47.1 136.9-112.6 98.9 3.6 -5.1 2.4 53 53 A G E -CD 41 60A 0 -2,-0.7 7,-2.0 7,-0.6 2,-0.4 -0.653 45.4-111.0-128.9-174.3 1.1 -5.7 -0.4 54 54 A E E -CD 40 59A 84 -14,-1.5 -14,-1.5 5,-0.2 2,-0.3 -0.956 26.1-179.9-126.2 143.7 1.0 -6.6 -4.1 55 55 A L E > - D 0 58A 17 3,-2.5 3,-1.4 -2,-0.4 -16,-0.1 -1.000 67.9 -11.8-143.7 142.5 0.0 -4.6 -7.1 56 56 A N T 3 S- 0 0 146 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.808 132.8 -50.4 37.6 37.3 -0.2 -5.3 -10.9 57 57 A G T 3 S+ 0 0 59 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.880 115.4 120.9 72.3 38.7 1.7 -8.5 -10.0 58 58 A Q E < -D 55 0A 132 -3,-1.4 -3,-2.5 2,-0.0 2,-0.5 -0.980 51.0-148.9-139.6 124.5 4.4 -6.7 -8.0 59 59 A K E +D 54 0A 123 -2,-0.4 2,-0.2 -5,-0.2 -5,-0.2 -0.792 45.1 106.7 -94.8 128.9 5.4 -7.2 -4.4 60 60 A G E -D 53 0A 2 -7,-2.0 -7,-0.6 -2,-0.5 2,-0.3 -0.759 63.0 -54.9-164.5-149.0 6.7 -4.2 -2.5 61 61 A L E -D 52 0A 51 -32,-0.5 -30,-2.6 -2,-0.2 -9,-0.2 -0.869 36.8-169.6-117.0 150.3 5.9 -1.6 0.2 62 62 A V E -D 51 0A 0 -11,-2.5 -11,-2.7 -2,-0.3 2,-0.4 -0.994 27.1-116.3-143.0 132.9 3.0 0.8 0.5 63 63 A P E > -D 50 0A 6 0, 0.0 3,-2.2 0, 0.0 -13,-0.2 -0.524 14.2-150.0 -69.7 118.3 2.4 3.8 2.8 64 64 A S G > S+ 0 0 32 -15,-0.6 3,-1.4 -2,-0.4 -14,-0.1 0.719 95.6 71.6 -60.2 -19.9 -0.7 3.2 5.0 65 65 A N G 3 S+ 0 0 136 -16,-0.3 -1,-0.3 1,-0.3 -15,-0.0 0.406 99.4 47.7 -76.9 3.9 -1.2 6.9 4.9 66 66 A F G < S+ 0 0 51 -3,-2.2 -53,-0.7 -53,-0.1 -52,-0.6 0.068 106.4 65.7-130.0 21.5 -2.2 6.6 1.3 67 67 A L < - 0 0 5 -3,-1.4 2,-0.3 -55,-0.3 -55,-0.2 -0.937 56.7-156.8-141.2 162.9 -4.7 3.7 1.6 68 68 A E - 0 0 107 -2,-0.3 -57,-1.7 -57,-0.3 3,-0.1 -0.919 34.8-106.0-147.9 117.3 -8.1 3.0 3.2 69 69 A E B -B 10 0A 117 -2,-0.3 2,-0.2 -59,-0.2 -59,-0.2 -0.136 43.2-121.8 -42.5 114.3 -9.4 -0.4 4.2 70 70 A V + 0 0 77 -61,-1.8 2,-0.3 1,-0.0 -61,-0.1 -0.453 39.7 171.1 -66.3 127.1 -12.1 -1.2 1.5 71 71 A S + 0 0 108 -2,-0.2 -1,-0.0 -3,-0.1 -2,-0.0 -0.876 1.7 163.2-144.5 107.6 -15.5 -1.7 3.0 72 72 A G - 0 0 60 -2,-0.3 2,-1.8 0, 0.0 -2,-0.0 -0.953 46.7-106.1-128.8 147.0 -18.7 -2.0 1.0 73 73 A P - 0 0 129 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.472 38.5-149.7 -69.7 84.4 -22.2 -3.3 1.7 74 74 A S + 0 0 123 -2,-1.8 2,-0.5 1,-0.1 0, 0.0 -0.412 22.1 176.2 -60.6 111.3 -22.0 -6.5 -0.3 75 75 A S 0 0 117 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 -0.879 360.0 360.0-125.0 99.4 -25.6 -7.2 -1.5 76 76 A G 0 0 126 -2,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.545 360.0 360.0 171.5 360.0 -26.0 -10.2 -3.7