==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT (HEME PROTEIN) 15-FEB-93 1CTY . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6811.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 180 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 117.7 4.4 10.7 -8.6 2 -4 A E + 0 0 167 1,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.089 360.0 80.3-147.7 40.5 1.3 11.8 -6.7 3 -3 A F - 0 0 35 67,-0.0 2,-0.5 97,-0.0 -1,-0.1 -0.937 54.5-161.1-154.1 123.4 1.9 15.5 -6.0 4 -2 A K - 0 0 165 -2,-0.3 97,-0.1 -3,-0.1 2,-0.0 -0.936 29.6-115.7-105.4 126.6 1.4 18.3 -8.4 5 -1 A A + 0 0 84 -2,-0.5 93,-0.2 1,-0.1 2,-0.1 -0.308 43.2 177.3 -62.1 142.7 3.1 21.6 -7.5 6 1 A G - 0 0 35 91,-0.6 2,-0.7 92,-0.2 3,-0.1 -0.159 37.5 -30.3-123.9-144.1 0.8 24.5 -6.8 7 2 A S > - 0 0 44 1,-0.2 4,-1.5 -2,-0.1 95,-0.3 -0.753 37.9-166.7 -85.6 117.1 0.5 28.1 -5.8 8 3 A A H > S+ 0 0 43 -2,-0.7 4,-2.2 2,-0.2 -1,-0.2 0.870 93.6 54.0 -64.9 -40.0 3.5 29.0 -3.5 9 4 A K H > S+ 0 0 165 1,-0.2 4,-1.3 2,-0.2 3,-0.4 0.958 110.5 41.0 -54.4 -65.0 1.4 32.1 -2.8 10 5 A K H > S+ 0 0 111 2,-0.3 4,-1.3 1,-0.3 -1,-0.2 0.656 114.0 54.9 -56.4 -31.6 -1.8 30.3 -1.7 11 6 A G H X S+ 0 0 0 -4,-1.5 4,-2.3 87,-0.3 -1,-0.3 0.907 106.6 53.1 -64.8 -45.2 0.3 27.8 0.2 12 7 A A H X S+ 0 0 15 -4,-2.2 4,-1.4 -3,-0.4 -2,-0.3 0.753 110.5 44.4 -59.0 -42.0 1.9 30.7 2.0 13 8 A T H X S+ 0 0 73 -4,-1.3 4,-2.1 2,-0.2 -1,-0.2 0.691 110.7 54.3 -81.2 -24.7 -1.5 32.1 3.0 14 9 A L H X S+ 0 0 23 -4,-1.3 4,-3.3 -5,-0.2 -2,-0.2 0.876 106.5 54.0 -72.5 -36.8 -2.8 28.7 4.1 15 10 A F H X>S+ 0 0 3 -4,-2.3 4,-5.7 3,-0.2 5,-1.0 0.926 110.9 45.0 -63.0 -51.2 0.3 28.3 6.3 16 11 A K H X5S+ 0 0 115 -4,-1.4 4,-0.7 2,-0.3 5,-0.4 0.954 118.1 41.0 -59.3 -57.2 -0.4 31.6 8.1 17 12 A T H <5S+ 0 0 112 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.867 134.6 25.0 -58.3 -33.5 -4.1 31.0 8.5 18 13 A R H <5S+ 0 0 91 -4,-3.3 -2,-0.3 -5,-0.1 -3,-0.2 0.717 130.7 18.2-111.4 -21.1 -3.2 27.4 9.4 19 14 A C H X5S+ 0 0 25 -4,-5.7 4,-1.8 -5,-0.2 3,-0.3 0.198 99.9 82.7-128.5 8.2 0.3 26.5 10.8 20 15 A L T < S- 0 0 100 2,-0.1 3,-2.2 12,-0.1 12,-0.3 -0.264 73.6-117.9 -52.4 134.3 12.6 30.8 8.8 27 22 A K T 3 S+ 0 0 162 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.634 116.8 28.7 -69.1 123.8 16.1 29.3 9.1 28 23 A G T 3 S+ 0 0 79 1,-0.4 -1,-0.3 -2,-0.2 -2,-0.1 0.410 98.9 141.3 93.4 -1.1 17.1 30.8 12.5 29 24 A G < - 0 0 12 -3,-2.2 -1,-0.4 -4,-0.1 7,-0.2 -0.553 49.4-121.8 -77.2 141.8 13.3 30.7 13.2 30 25 A P - 0 0 71 0, 0.0 -6,-0.1 0, 0.0 2,-0.1 -0.510 17.1-108.6 -86.8 157.8 12.4 29.7 16.7 31 26 A H + 0 0 65 -2,-0.2 2,-0.2 5,-0.1 -8,-0.1 -0.386 36.6 168.8 -78.7 156.0 10.2 26.9 18.0 32 27 A K S S- 0 0 93 2,-2.6 -10,-0.1 -10,-0.4 -1,-0.1 -0.270 72.0 -34.7-134.6-131.1 6.8 27.7 19.4 33 28 A V S S+ 0 0 101 -12,-0.3 -10,-0.1 -2,-0.2 -11,-0.1 0.968 141.8 29.3 -62.3 -61.2 4.3 24.9 20.1 34 29 A G S S- 0 0 8 -12,-2.1 -2,-2.6 1,-0.1 2,-0.1 -0.348 105.6 -98.1 -87.4 176.5 5.4 22.8 17.1 35 30 A P - 0 0 15 0, 0.0 2,-0.3 0, 0.0 -11,-0.3 -0.315 41.7 -79.9 -88.0 172.7 9.1 23.2 16.1 36 31 A N - 0 0 19 -7,-0.2 -11,-0.2 -13,-0.2 -5,-0.1 -0.570 34.1-153.9 -80.1 124.0 10.7 25.3 13.3 37 32 A L > + 0 0 29 -13,-2.1 3,-1.4 -2,-0.3 4,-0.2 0.262 41.3 142.7 -88.6 1.5 10.3 23.5 10.0 38 33 A H T 3 S+ 0 0 35 -12,-0.3 70,-0.1 -14,-0.3 69,-0.1 -0.357 81.4 0.3 -54.6 120.3 13.4 25.0 8.4 39 34 A G T 3 S+ 0 0 34 68,-1.5 -1,-0.3 -14,-0.2 69,-0.1 0.857 81.8 148.7 64.5 47.0 14.8 22.2 6.3 40 35 A I X + 0 0 14 -3,-1.4 3,-2.3 63,-0.1 24,-0.4 0.901 41.9 93.9 -68.5 -49.2 12.3 19.5 7.0 41 36 A F T 3 S+ 0 0 58 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.089 93.9 16.5 -56.2 145.9 12.5 17.7 3.7 42 37 A G T 3 S+ 0 0 59 22,-2.4 -1,-0.3 1,-0.3 2,-0.3 0.393 108.3 118.2 68.9 5.0 14.9 14.8 3.4 43 38 A R < - 0 0 60 -3,-2.3 21,-4.1 21,-0.4 -1,-0.3 -0.643 64.4-125.5-102.7 144.5 14.8 15.0 7.2 44 39 A H B > -A 63 0A 85 -2,-0.3 3,-0.6 19,-0.3 19,-0.2 -0.352 38.0 -89.5 -80.8 167.5 13.6 12.3 9.6 45 40 A S T 3 S+ 0 0 0 17,-0.7 -1,-0.1 1,-0.2 16,-0.0 -0.424 101.7 22.8 -81.2 161.6 10.9 12.9 12.2 46 41 A G T 3 S+ 0 0 10 -2,-0.1 -1,-0.2 1,-0.1 7,-0.1 0.785 87.3 119.3 57.7 37.9 11.5 14.1 15.8 47 42 A Q < + 0 0 116 -3,-0.6 2,-0.5 2,-0.1 -2,-0.1 0.430 26.5 104.2-116.7 1.4 14.9 15.6 14.9 48 43 A A > - 0 0 13 2,-0.0 3,-0.6 1,-0.0 5,-0.2 -0.733 66.6-139.3 -81.7 125.2 14.9 19.4 15.7 49 44 A E T 3 S+ 0 0 173 -2,-0.5 3,-0.1 1,-0.2 -2,-0.1 -0.563 86.2 46.2 -82.1 158.2 16.9 19.7 18.9 50 45 A G T 3 S+ 0 0 86 1,-0.3 2,-0.5 -2,-0.2 -1,-0.2 0.369 101.5 111.0 85.8 -6.6 15.9 22.0 21.7 51 46 A Y < - 0 0 39 -3,-0.6 2,-0.9 -5,-0.1 -1,-0.3 -0.936 61.8-153.3-121.1 130.0 12.6 20.4 20.8 52 47 A S - 0 0 94 -2,-0.5 -3,-0.1 -3,-0.1 2,-0.1 -0.675 21.7-179.1 -93.0 75.9 10.6 17.9 22.9 53 48 A Y - 0 0 45 -2,-0.9 30,-0.0 -5,-0.2 -19,-0.0 -0.413 35.5 -96.2 -76.3 166.0 8.5 15.7 20.6 54 49 A T > - 0 0 30 1,-0.1 4,-0.9 -2,-0.1 -1,-0.1 -0.049 35.6-110.4 -68.6 175.2 6.1 13.0 21.8 55 50 A D H > S+ 0 0 130 2,-0.2 4,-1.8 1,-0.1 5,-0.2 0.775 118.8 63.8 -78.4 -28.6 7.6 9.4 21.9 56 51 A A H > S+ 0 0 22 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.854 101.4 47.7 -55.3 -47.7 5.1 8.8 18.9 57 52 A N H > S+ 0 0 16 2,-0.2 4,-0.8 1,-0.2 5,-0.4 0.821 111.0 49.2 -66.3 -46.8 6.8 11.2 16.7 58 53 A I H < S+ 0 0 77 -4,-0.9 3,-0.5 1,-0.2 -2,-0.2 0.887 112.8 46.4 -59.7 -49.3 10.4 10.0 17.3 59 54 A K H < S+ 0 0 157 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.828 98.4 70.3 -58.5 -47.4 9.5 6.4 16.7 60 55 A K H < S- 0 0 77 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.822 77.5-171.3 -38.5 -48.5 7.6 7.2 13.6 61 56 A N < + 0 0 82 -4,-0.8 2,-0.1 -3,-0.5 -1,-0.1 0.764 12.3 178.0 44.7 48.1 10.9 8.0 12.0 62 57 A V - 0 0 8 -5,-0.4 -17,-0.7 -18,-0.1 2,-0.6 -0.408 29.8-129.2 -71.6 144.4 9.3 9.4 8.8 63 58 A L B -A 44 0A 69 -19,-0.2 2,-1.7 -2,-0.1 -19,-0.3 -0.806 27.9-123.2 -98.6 126.5 11.5 10.9 6.0 64 59 A W + 0 0 15 -21,-4.1 -22,-2.4 -2,-0.6 -21,-0.4 -0.555 50.4 152.3 -81.4 94.4 10.1 14.3 5.2 65 60 A D >> - 0 0 63 -2,-1.7 4,-2.7 -24,-0.2 3,-0.9 -0.860 59.4-106.7-117.6 149.9 9.3 14.1 1.5 66 61 A E T 34 S+ 0 0 83 -2,-0.3 4,-0.5 1,-0.3 34,-0.1 0.708 121.1 49.5 -44.4 -37.0 6.7 16.1 -0.3 67 62 A N T 3> S+ 0 0 52 2,-0.2 4,-1.1 1,-0.1 3,-0.3 0.822 110.4 46.9 -77.1 -37.7 4.6 13.0 -0.6 68 63 A N H <> S+ 0 0 24 -3,-0.9 4,-3.0 1,-0.2 3,-0.4 0.919 106.3 60.6 -65.0 -51.4 4.8 11.9 3.1 69 64 A M H X S+ 0 0 19 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.793 102.6 52.1 -49.6 -30.3 4.0 15.4 4.1 70 65 A S H > S+ 0 0 11 -4,-0.5 4,-2.4 -3,-0.3 -1,-0.2 0.848 110.1 46.7 -77.1 -42.5 0.6 15.1 2.2 71 66 A E H X S+ 0 0 123 -4,-1.1 4,-1.3 -3,-0.4 -2,-0.2 0.983 116.8 43.3 -61.8 -61.0 -0.5 11.9 3.9 72 67 A F H >< S+ 0 0 27 -4,-3.0 3,-0.8 1,-0.3 7,-0.3 0.947 113.1 53.8 -51.6 -50.8 0.5 13.3 7.3 73 68 A L H 3< S+ 0 0 21 -4,-2.3 17,-0.9 -5,-0.3 -1,-0.3 0.886 99.9 64.9 -52.2 -36.7 -1.2 16.6 6.3 74 69 A T H 3< S- 0 0 51 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.859 132.8 -19.0 -49.4 -54.7 -4.3 14.5 5.5 75 70 A N S+ 0 0 0 0, 0.0 4,-5.5 0, 0.0 7,-0.2 0.913 88.5 44.1 -53.2 -59.6 -1.9 13.9 11.6 77 72 A X H 4 S+ 0 0 158 10,-0.4 6,-0.1 2,-0.3 11,-0.1 0.831 114.5 50.0 -56.9 -42.4 -3.0 11.7 14.4 78 73 A K H 4 S+ 0 0 175 2,-0.2 -1,-0.2 1,-0.1 -6,-0.1 0.956 116.7 43.5 -67.0 -41.7 -4.2 9.0 12.1 79 74 A Y H < S+ 0 0 56 -4,-2.8 -2,-0.3 1,-0.3 -1,-0.1 0.921 136.2 13.8 -69.1 -49.6 -0.7 9.3 10.4 80 75 A I S >< S- 0 0 8 -4,-5.5 3,-1.3 -5,-0.2 -1,-0.3 -0.761 77.2-158.5-131.6 91.7 1.1 9.4 13.8 81 76 A P T 3 S+ 0 0 100 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.532 82.1 36.7 -69.0 131.2 -1.1 8.4 16.8 82 77 A G T 3 S+ 0 0 55 1,-0.4 -27,-0.1 -2,-0.3 -5,-0.1 -0.242 80.0 133.2 118.8 -35.2 0.5 9.9 19.8 83 78 A T < - 0 0 12 -3,-1.3 -1,-0.4 -7,-0.2 -3,-0.1 -0.135 53.6-143.0 -50.3 134.9 1.7 13.3 18.4 84 79 A K + 0 0 106 -3,-0.1 2,-0.1 2,-0.1 -1,-0.1 0.616 63.3 122.3 -73.4 -18.4 0.9 16.3 20.5 85 80 A M - 0 0 47 1,-0.1 2,-1.4 2,-0.1 -8,-0.1 -0.369 57.7-146.4 -56.0 124.8 0.2 18.3 17.3 86 81 A A + 0 0 87 -2,-0.1 2,-0.4 -10,-0.1 -1,-0.1 -0.616 48.2 129.1 -95.0 78.4 -3.4 19.6 17.5 87 82 A F - 0 0 48 -2,-1.4 -10,-0.4 1,-0.1 3,-0.1 -0.790 44.9-163.2-149.6 119.6 -4.4 19.5 13.8 88 83 A G - 0 0 57 -2,-0.4 -1,-0.1 1,-0.1 2,-0.1 0.744 50.5-122.5 -50.8 -48.0 -7.4 18.1 12.2 89 84 A G - 0 0 18 -14,-0.1 2,-0.9 -13,-0.1 -15,-0.2 -0.001 15.9 -80.6 109.8 153.0 -6.0 18.1 8.7 90 85 A L - 0 0 2 -17,-0.9 6,-0.2 1,-0.2 5,-0.0 -0.760 34.2-166.3 -87.8 97.9 -6.6 19.5 5.2 91 86 A K + 0 0 163 -2,-0.9 2,-0.4 4,-0.1 -1,-0.2 0.858 66.6 74.8 -55.3 -40.9 -9.2 17.2 3.5 92 87 A K >> - 0 0 99 1,-0.1 4,-2.0 2,-0.0 3,-0.6 -0.596 66.6-152.3 -86.9 134.6 -8.6 18.7 -0.0 93 88 A E H 3> S+ 0 0 104 -2,-0.4 4,-3.8 1,-0.2 5,-0.3 0.859 95.7 63.5 -67.2 -38.1 -5.5 17.8 -2.0 94 89 A K H 3> S+ 0 0 163 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.779 110.6 41.1 -55.3 -38.0 -5.5 21.0 -4.0 95 90 A D H <> S+ 0 0 39 -3,-0.6 4,-2.3 2,-0.2 -2,-0.2 0.821 115.2 49.4 -76.2 -48.8 -5.0 22.7 -0.6 96 91 A R H X S+ 0 0 33 -4,-2.0 4,-2.6 1,-0.2 -2,-0.2 0.875 112.4 48.8 -53.8 -50.0 -2.5 20.1 0.6 97 92 A N H X S+ 0 0 12 -4,-3.8 4,-1.4 2,-0.2 -91,-0.6 0.880 109.2 52.5 -64.3 -47.4 -0.6 20.5 -2.7 98 93 A D H >X S+ 0 0 30 -4,-1.2 4,-1.8 -5,-0.3 3,-0.8 0.976 112.0 44.4 -55.6 -60.8 -0.5 24.3 -2.5 99 94 A L H 3X S+ 0 0 1 -4,-2.3 4,-2.8 1,-0.3 3,-0.4 0.924 110.0 54.0 -53.7 -51.1 0.9 24.4 1.1 100 95 A I H 3X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.3 -1,-0.3 0.806 106.5 55.1 -52.8 -28.9 3.5 21.7 0.3 101 96 A T H < S+ 0 0 146 -4,-2.3 3,-3.1 1,-0.2 -2,-0.2 0.990 124.5 44.2 -60.5 -66.3 10.2 26.9 -1.3 106 101 A A H 3< S+ 0 0 31 -4,-2.3 -2,-0.2 1,-0.3 -3,-0.2 0.704 108.8 55.9 -53.1 -29.4 10.1 28.5 2.1 107 102 A T T 3< 0 0 4 -4,-3.8 -68,-1.5 -5,-0.2 -1,-0.3 0.491 360.0 360.0 -90.0 10.8 11.8 25.6 4.0 108 103 A E < 0 0 201 -3,-3.1 -2,-0.2 -4,-0.4 -1,-0.2 0.978 360.0 360.0 -85.5 360.0 14.8 25.8 1.6