==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT (HEME PROTEIN) 15-FEB-93 1CTZ . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6685.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 165 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 129.9 3.5 10.6 -9.3 2 -4 A E + 0 0 180 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.023 360.0 70.8-171.2 30.7 0.7 11.7 -6.8 3 -3 A F - 0 0 23 67,-0.0 2,-0.4 94,-0.0 -1,-0.3 -0.900 55.9-174.8-154.7 121.2 1.8 15.3 -6.0 4 -2 A K - 0 0 153 -2,-0.3 97,-0.1 -3,-0.1 93,-0.0 -0.992 34.9 -96.6-128.1 132.3 1.5 18.2 -8.4 5 -1 A A - 0 0 79 -2,-0.4 2,-0.2 1,-0.1 93,-0.2 0.060 41.7-171.8 -44.9 146.4 2.7 21.7 -7.8 6 1 A G - 0 0 26 91,-0.6 2,-0.5 92,-0.2 3,-0.1 -0.487 39.8 -55.2-126.4-164.9 0.4 24.4 -6.5 7 2 A S > - 0 0 42 1,-0.2 4,-1.3 -2,-0.2 95,-0.3 -0.728 35.0-162.2 -85.0 117.8 0.4 28.1 -5.8 8 3 A A H > S+ 0 0 40 -2,-0.5 4,-3.2 2,-0.2 5,-0.2 0.938 93.9 55.4 -62.4 -51.1 3.3 29.0 -3.5 9 4 A K H 4 S+ 0 0 169 2,-0.3 4,-0.4 1,-0.3 -1,-0.1 0.963 112.6 37.2 -38.9 -72.9 1.4 32.3 -2.9 10 5 A K H >> S+ 0 0 110 2,-0.2 4,-1.8 1,-0.2 3,-1.7 0.907 115.3 60.9 -47.2 -39.8 -1.9 30.6 -1.8 11 6 A G H >X S+ 0 0 0 -4,-1.3 4,-1.7 1,-0.3 3,-1.2 0.971 100.6 51.3 -49.5 -63.5 0.6 28.3 -0.2 12 7 A A H 3X S+ 0 0 34 -4,-3.2 4,-0.7 1,-0.3 -1,-0.3 0.298 109.0 52.2 -59.7 -2.1 2.0 31.1 1.9 13 8 A T H <> S+ 0 0 80 -3,-1.7 4,-2.0 -4,-0.4 -1,-0.3 0.673 104.6 51.3-111.2 -24.4 -1.5 32.1 3.2 14 9 A L H X>S+ 0 0 8 -4,-1.7 4,-4.6 3,-0.3 3,-3.3 0.972 112.5 45.9 -48.4 -71.1 0.7 28.5 6.4 16 11 A K H 3X5S+ 0 0 129 -4,-0.7 4,-0.6 1,-0.3 5,-0.4 0.816 125.1 31.6 -37.7 -69.5 0.1 32.0 7.9 17 12 A T H 3<5S+ 0 0 104 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.304 135.6 28.1 -72.3 -0.2 -3.5 31.3 8.8 18 13 A R H <<5S+ 0 0 104 -3,-3.3 -3,-0.3 -4,-0.5 -2,-0.2 0.658 130.1 17.7-136.2 -27.1 -3.1 27.6 9.4 19 14 A C H >X5S+ 0 0 25 -4,-4.6 4,-2.4 -5,-0.3 3,-1.1 0.558 100.7 76.4-123.8 -23.0 0.5 26.7 10.6 20 15 A L T 3< S- 0 0 118 1,-0.1 3,-3.3 12,-0.1 2,-0.4 -0.250 79.9-106.1 -66.1 130.4 13.0 30.0 8.2 27 22 A K T 3 S+ 0 0 167 1,-0.3 -1,-0.1 -2,-0.1 -2,-0.1 -0.319 114.1 15.8 -51.4 103.6 16.6 29.1 8.8 28 23 A G T 3 S+ 0 0 75 1,-0.5 -1,-0.3 -2,-0.4 -2,-0.1 0.445 91.2 129.5 109.7 -6.2 17.1 30.6 12.3 29 24 A G < - 0 0 15 -3,-3.3 -1,-0.5 1,-0.1 7,-0.1 -0.672 60.8-111.0 -80.3 151.6 13.5 31.1 13.3 30 25 A P - 0 0 85 0, 0.0 2,-0.2 0, 0.0 -6,-0.2 -0.278 20.4-105.2 -82.3 166.7 12.8 29.5 16.7 31 26 A H + 0 0 63 1,-0.1 2,-0.1 -2,-0.1 -8,-0.1 -0.632 43.8 171.7 -86.8 146.6 10.7 26.5 17.7 32 27 A K S S- 0 0 100 2,-4.3 -10,-0.1 -10,-0.6 -9,-0.1 0.018 70.7 -30.2-123.9-120.5 7.4 27.6 19.3 33 28 A V S S+ 0 0 100 -12,-0.2 -10,-0.1 -2,-0.1 -11,-0.1 0.924 144.8 29.0 -63.2 -45.5 4.6 25.1 20.1 34 29 A G S S- 0 0 6 -12,-2.7 -2,-4.3 1,-0.1 -10,-0.1 -0.671 104.3 -91.6-106.9 172.2 6.0 23.1 17.2 35 30 A P - 0 0 14 0, 0.0 -11,-0.5 0, 0.0 2,-0.1 -0.135 43.6 -95.9 -73.9 170.7 9.5 23.0 15.9 36 31 A N B -a 24 0A 16 -13,-0.2 -11,-0.2 -7,-0.1 -5,-0.1 -0.557 33.3-151.7 -84.5 153.4 10.9 25.3 13.2 37 32 A L > + 0 0 36 -13,-2.5 3,-2.4 -2,-0.1 4,-0.2 0.383 40.2 142.1-111.1 7.8 10.7 23.4 9.9 38 33 A H T 3 S+ 0 0 41 -14,-0.3 70,-0.1 1,-0.3 -12,-0.1 -0.194 81.9 10.7 -44.7 127.3 13.6 24.9 7.8 39 34 A G T 3> S+ 0 0 29 68,-2.4 4,-0.6 -14,-0.2 -1,-0.3 0.626 84.7 146.5 71.5 19.1 15.1 22.0 5.9 40 35 A I T X4 + 0 0 9 -3,-2.4 3,-0.7 -15,-0.2 24,-0.4 0.911 46.2 80.0 -52.8 -45.1 12.3 19.7 6.7 41 36 A F T 34 S+ 0 0 51 1,-0.2 2,-0.5 -4,-0.2 24,-0.2 -0.344 99.0 21.3 -68.0 145.1 12.4 17.7 3.4 42 37 A G T 34 S+ 0 0 54 22,-2.9 -1,-0.2 1,-0.3 -2,-0.1 -0.189 106.8 101.7 93.8 -44.2 15.1 15.1 3.1 43 38 A R S << S- 0 0 72 -3,-0.7 21,-3.8 -4,-0.6 -1,-0.3 -0.335 73.5-116.2 -73.6 157.9 15.3 15.0 6.9 44 39 A H B -B 63 0B 78 19,-0.3 3,-0.4 1,-0.2 19,-0.3 -0.408 42.2 -75.3 -85.6 166.5 13.7 12.3 9.1 45 40 A S S S+ 0 0 1 17,-1.5 -1,-0.2 1,-0.2 18,-0.0 -0.199 104.6 7.1 -72.0 145.6 11.0 12.7 11.7 46 41 A G S S+ 0 0 7 -3,-0.1 -1,-0.2 1,-0.1 7,-0.1 0.911 86.7 116.6 55.0 66.9 11.7 14.3 15.1 47 42 A Q + 0 0 130 -3,-0.4 2,-0.1 2,-0.1 -2,-0.1 0.375 26.6 123.8-138.1 -1.6 15.3 15.5 14.7 48 43 A A > - 0 0 15 1,-0.1 3,-1.1 -12,-0.1 2,-0.4 -0.429 66.7-112.5 -57.5 142.2 15.3 19.3 15.1 49 44 A E T 3 S+ 0 0 185 1,-0.2 -1,-0.1 -2,-0.1 3,-0.1 -0.565 95.5 23.8 -94.4 139.8 17.7 20.3 17.9 50 45 A G T 3 S+ 0 0 78 -2,-0.4 2,-0.5 1,-0.3 -1,-0.2 0.630 98.9 122.8 91.0 16.9 16.4 21.8 21.1 51 46 A Y < - 0 0 41 -3,-1.1 2,-1.2 -16,-0.0 -1,-0.3 -0.913 55.9-148.4-120.3 133.1 13.1 20.2 20.4 52 47 A S + 0 0 84 -2,-0.5 2,-0.1 -3,-0.1 -3,-0.1 -0.675 25.6 179.3-102.7 96.4 11.0 17.8 22.5 53 48 A Y - 0 0 40 -2,-1.2 30,-0.1 -5,-0.1 -19,-0.0 -0.438 32.6 -99.6 -82.8 158.8 9.1 15.6 20.2 54 49 A T > - 0 0 36 -2,-0.1 4,-1.1 1,-0.1 -1,-0.1 -0.105 32.8-106.4 -72.4 175.7 6.7 12.9 21.4 55 50 A D H > S+ 0 0 125 1,-0.2 4,-2.5 27,-0.2 5,-0.2 0.900 118.3 62.3 -64.9 -41.3 7.8 9.2 21.5 56 51 A A H > S+ 0 0 21 26,-0.4 4,-2.4 2,-0.2 -1,-0.2 0.810 101.1 44.3 -48.4 -56.2 5.5 8.8 18.5 57 52 A N H >> S+ 0 0 17 25,-0.3 4,-1.9 2,-0.2 3,-0.8 0.996 114.5 49.3 -57.8 -68.4 7.1 11.1 15.9 58 53 A I H 3< S+ 0 0 86 -4,-1.1 -2,-0.2 1,-0.3 3,-0.2 0.833 115.2 44.6 -38.7 -53.0 10.6 9.9 16.7 59 54 A K H 3< S+ 0 0 152 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.850 103.4 63.5 -63.3 -40.1 9.5 6.3 16.4 60 55 A K H << S- 0 0 90 -4,-2.4 -1,-0.2 -3,-0.8 -2,-0.2 0.913 85.7-167.5 -49.9 -46.0 7.5 7.0 13.2 61 56 A N < - 0 0 86 -4,-1.9 2,-0.3 -3,-0.2 -3,-0.1 0.962 11.4-173.8 48.3 71.7 10.9 7.8 11.7 62 57 A V - 0 0 8 -5,-0.2 -17,-1.5 3,-0.0 2,-0.7 -0.727 28.6-132.6 -96.6 138.6 9.6 9.5 8.5 63 58 A L B -B 44 0B 92 -2,-0.3 2,-1.5 -19,-0.3 -19,-0.3 -0.814 32.7-126.0 -87.3 116.8 11.6 10.7 5.6 64 59 A W + 0 0 11 -21,-3.8 -22,-2.9 -2,-0.7 2,-0.3 -0.580 51.4 151.0 -76.2 95.3 10.2 14.2 5.0 65 60 A D >> - 0 0 65 -2,-1.5 4,-1.9 -24,-0.2 3,-0.5 -0.754 57.8-109.3-115.5 165.1 9.2 14.1 1.3 66 61 A E H 3> S+ 0 0 75 -2,-0.3 4,-0.7 1,-0.2 34,-0.1 0.796 117.3 51.5 -63.8 -37.4 6.5 16.0 -0.4 67 62 A N H 3> S+ 0 0 62 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.736 112.9 44.4 -72.4 -32.8 4.3 13.0 -0.9 68 63 A N H <> S+ 0 0 25 -3,-0.5 4,-3.1 2,-0.2 3,-0.3 0.839 107.7 58.3 -70.3 -56.4 4.5 11.9 2.8 69 64 A M H X S+ 0 0 14 -4,-1.9 4,-1.2 1,-0.2 -2,-0.2 0.571 102.6 55.6 -51.2 -29.6 3.9 15.3 4.1 70 65 A S H X S+ 0 0 9 -4,-0.7 4,-1.5 2,-0.2 -1,-0.2 0.801 110.1 41.6 -81.9 -44.6 0.6 15.5 2.2 71 66 A E H X S+ 0 0 97 -4,-0.7 4,-2.2 -3,-0.3 -2,-0.2 0.898 116.2 51.2 -66.3 -43.8 -0.9 12.3 3.7 72 67 A F H < S+ 0 0 20 -4,-3.1 7,-0.3 1,-0.3 -2,-0.2 0.952 111.5 49.0 -50.3 -54.2 0.5 13.4 7.1 73 68 A L H < S+ 0 0 10 -4,-1.2 17,-1.4 1,-0.2 -1,-0.3 0.831 101.9 63.4 -57.9 -30.3 -1.2 16.7 6.4 74 69 A T H < S- 0 0 46 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.966 133.7 -16.6 -58.1 -51.5 -4.3 14.9 5.5 75 70 A N X - 0 0 66 -4,-2.2 4,-2.1 14,-0.1 -1,-0.3 -0.705 62.5-174.9-158.3 102.3 -4.6 13.6 9.1 76 71 A P H > S+ 0 0 0 0, 0.0 4,-3.8 0, 0.0 7,-0.1 0.899 86.1 52.0 -68.3 -46.9 -1.6 13.7 11.5 77 72 A X H 4 S+ 0 0 142 10,-0.5 6,-0.1 11,-0.3 11,-0.1 0.912 115.9 47.8 -56.8 -32.1 -3.0 11.8 14.5 78 73 A K H 4 S+ 0 0 157 -6,-0.2 -1,-0.2 2,-0.2 -6,-0.1 0.940 113.0 45.3 -70.3 -51.9 -3.8 9.2 12.0 79 74 A Y H < S+ 0 0 66 -4,-2.1 -2,-0.2 -7,-0.3 -1,-0.2 0.916 133.5 16.0 -62.2 -45.7 -0.4 9.3 10.3 80 75 A I S >< S- 0 0 2 -4,-3.8 3,-1.4 -8,-0.1 -1,-0.3 -0.762 81.4-151.9-134.2 78.9 1.5 9.2 13.6 81 76 A P T 3 S+ 0 0 96 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.456 85.2 37.6 -55.6 126.9 -0.8 8.2 16.5 82 77 A G T 3 S+ 0 0 47 1,-0.4 -26,-0.4 -2,-0.1 2,-0.3 0.379 82.0 142.0 107.5 8.9 0.6 9.8 19.6 83 78 A T < - 0 0 14 -3,-1.4 -1,-0.4 -27,-0.2 -3,-0.0 -0.695 51.9-141.7 -85.0 145.9 1.7 13.1 18.0 84 79 A K + 0 0 109 -2,-0.3 2,-1.3 2,-0.1 -1,-0.1 0.298 66.1 120.9 -82.2 10.3 1.2 16.3 20.0 85 80 A M - 0 0 45 1,-0.1 2,-3.1 2,-0.1 -8,-0.2 -0.618 49.7-164.0 -78.8 92.7 0.2 18.0 16.8 86 81 A A + 0 0 90 -2,-1.3 2,-0.5 -10,-0.1 -1,-0.1 -0.548 47.1 129.1 -72.7 67.7 -3.3 19.2 17.7 87 82 A F - 0 0 37 -2,-3.1 -10,-0.5 1,-0.2 3,-0.1 -0.958 44.7-165.4-133.1 113.5 -3.9 19.7 13.9 88 83 A G - 0 0 59 -2,-0.5 -11,-0.3 1,-0.2 2,-0.2 0.964 47.2-105.1 -56.8 -65.8 -7.0 18.1 12.6 89 84 A G - 0 0 12 -14,-0.2 2,-0.6 -13,-0.1 -1,-0.2 -0.854 6.6 -92.2 153.6 173.1 -6.2 18.4 8.9 90 85 A L - 0 0 4 -17,-1.4 6,-0.1 -2,-0.2 -15,-0.0 -0.903 34.0-175.4-117.4 89.7 -6.3 19.8 5.4 91 86 A K + 0 0 112 -2,-0.6 2,-0.5 4,-0.0 -1,-0.1 0.767 56.0 90.0 -62.8 -31.2 -8.9 17.6 3.8 92 87 A K > - 0 0 99 1,-0.2 4,-2.3 -3,-0.1 5,-0.2 -0.559 63.1-153.8 -82.1 128.8 -8.5 19.2 0.3 93 88 A E H > S+ 0 0 121 -2,-0.5 4,-2.1 1,-0.2 -1,-0.2 0.973 99.0 50.9 -57.2 -48.9 -5.9 17.8 -2.1 94 89 A K H > S+ 0 0 138 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.861 109.1 49.4 -52.1 -55.7 -5.6 21.2 -3.8 95 90 A D H > S+ 0 0 40 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.779 110.7 51.3 -56.2 -43.5 -5.0 23.1 -0.4 96 91 A R H X S+ 0 0 37 -4,-2.3 4,-3.0 2,-0.2 5,-0.3 0.916 108.0 53.2 -58.7 -47.9 -2.3 20.6 0.6 97 92 A N H X S+ 0 0 17 -4,-2.1 4,-2.5 -5,-0.2 -91,-0.6 0.938 109.4 45.0 -59.2 -53.4 -0.6 21.0 -2.8 98 93 A D H X S+ 0 0 24 -4,-2.1 4,-2.6 1,-0.2 5,-0.2 0.936 114.3 52.3 -60.5 -39.2 -0.3 24.8 -2.6 99 94 A L H X S+ 0 0 1 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.935 111.7 43.6 -55.5 -55.9 0.9 24.4 1.0 100 95 A I H X S+ 0 0 0 -4,-3.0 4,-3.8 1,-0.3 5,-0.3 0.801 109.9 57.6 -58.6 -33.1 3.6 21.9 0.2 101 96 A T H X S+ 0 0 8 -4,-2.5 4,-1.5 -5,-0.3 -1,-0.3 0.970 110.7 43.6 -65.9 -42.2 4.6 24.0 -2.8 102 97 A Y H X S+ 0 0 52 -4,-2.6 4,-3.1 -95,-0.3 5,-0.3 0.898 116.4 47.2 -66.6 -41.3 5.1 26.9 -0.3 103 98 A L H X S+ 0 0 7 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.972 106.0 56.1 -65.5 -50.8 6.9 24.6 2.1 104 99 A K H < S+ 0 0 77 -4,-3.8 -1,-0.2 1,-0.2 -2,-0.2 0.868 118.7 39.5 -39.2 -44.1 9.1 23.0 -0.6 105 100 A K H >< S+ 0 0 127 -4,-1.5 3,-1.0 -5,-0.3 -2,-0.2 0.976 114.1 42.0 -75.4 -62.3 10.1 26.6 -1.2 106 101 A A H 3< S+ 0 0 37 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.2 0.593 112.6 52.1 -69.9 -22.6 10.5 28.6 2.1 107 102 A T T 3< 0 0 1 -4,-1.9 -68,-2.4 -5,-0.3 -1,-0.2 0.197 360.0 360.0 -97.6 10.1 12.3 25.9 4.1 108 103 A E < 0 0 185 -3,-1.0 -1,-0.2 -5,-0.2 -2,-0.2 0.937 360.0 360.0 -86.8 360.0 15.0 25.4 1.5