==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 23-MAY-05 2CT3 . COMPND 2 MOLECULE: VINEXIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.MIYAMOTO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5425.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 34.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 70.7 -20.5 2.9 18.3 2 2 A S - 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.989 360.0 -86.1-158.8 153.1 -19.7 2.6 14.7 3 3 A S - 0 0 125 -2,-0.3 2,-0.2 1,-0.1 0, 0.0 -0.100 46.2-123.7 -57.0 158.7 -18.7 0.0 12.0 4 4 A G - 0 0 72 1,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.617 18.9-103.9-105.7 166.8 -15.1 -0.9 11.6 5 5 A S - 0 0 112 -2,-0.2 2,-0.6 2,-0.0 -1,-0.0 -0.791 29.8-160.3 -93.8 124.9 -12.7 -0.8 8.7 6 6 A S + 0 0 116 -2,-0.5 2,-0.3 29,-0.0 27,-0.0 -0.911 22.0 158.6-108.7 117.8 -11.9 -4.2 7.1 7 7 A G - 0 0 39 -2,-0.6 28,-0.2 29,-0.0 27,-0.1 -0.829 38.7-103.8-132.1 171.0 -8.8 -4.4 5.0 8 8 A T E -A 34 0A 60 26,-2.7 26,-1.9 -2,-0.3 2,-0.2 -0.785 36.6-112.9-100.0 139.2 -6.3 -7.0 3.6 9 9 A P E +A 33 0A 38 0, 0.0 56,-1.1 0, 0.0 55,-0.6 -0.439 43.6 167.5 -69.8 137.1 -2.8 -7.4 5.1 10 10 A Y E -AB 32 63A 16 22,-2.4 22,-2.3 53,-0.2 2,-0.4 -0.846 25.8-134.6-141.3 176.7 0.1 -6.5 2.8 11 11 A R E -AB 31 62A 150 51,-1.8 51,-1.7 20,-0.3 2,-1.2 -0.994 19.7-124.9-142.8 132.8 3.9 -5.9 2.9 12 12 A A E -AB 30 61A 0 18,-2.9 17,-3.1 -2,-0.4 18,-0.5 -0.631 19.1-168.1 -78.9 97.2 6.0 -3.1 1.4 13 13 A M S S+ 0 0 72 47,-1.7 2,-0.3 -2,-1.2 -1,-0.2 0.828 76.1 13.2 -53.1 -33.4 8.6 -4.9 -0.7 14 14 A Y S S- 0 0 127 46,-1.2 2,-0.2 14,-0.1 16,-0.1 -0.962 90.4 -93.1-143.3 159.2 10.4 -1.6 -1.0 15 15 A Q - 0 0 96 -2,-0.3 2,-0.3 12,-0.1 12,-0.3 -0.470 38.7-151.8 -74.1 142.4 10.5 1.8 0.6 16 16 A Y B -F 26 0B 31 10,-2.1 10,-0.7 -2,-0.2 -1,-0.0 -0.858 9.9-148.2-117.0 151.7 8.4 4.5 -1.0 17 17 A R - 0 0 194 -2,-0.3 2,-0.3 8,-0.1 8,-0.1 -0.783 16.0-160.2-121.8 87.2 8.8 8.3 -1.1 18 18 A P - 0 0 35 0, 0.0 7,-0.1 0, 0.0 38,-0.0 -0.509 8.7-165.0 -69.8 123.2 5.4 10.0 -1.3 19 19 A Q S S+ 0 0 195 -2,-0.3 2,-0.3 1,-0.1 3,-0.1 0.077 74.3 48.3 -95.3 23.0 5.7 13.6 -2.5 20 20 A N S > S- 0 0 81 3,-0.1 3,-2.1 1,-0.1 -1,-0.1 -0.911 82.0-123.2-163.8 132.8 2.2 14.4 -1.3 21 21 A E T 3 S+ 0 0 184 1,-0.3 4,-0.1 -2,-0.3 -1,-0.1 0.820 112.3 66.3 -43.8 -35.5 0.2 13.9 1.9 22 22 A D T 3 S+ 0 0 96 32,-0.1 33,-1.4 -3,-0.1 -1,-0.3 0.895 91.2 73.4 -55.2 -43.0 -2.3 12.0 -0.2 23 23 A E B < S-c 55 0A 51 -3,-2.1 2,-0.5 31,-0.3 33,-0.2 -0.499 84.2-129.7 -76.3 142.3 0.3 9.3 -0.9 24 24 A L - 0 0 3 31,-1.0 2,-0.1 -2,-0.2 -2,-0.1 -0.806 19.4-125.6 -97.0 130.1 1.2 6.9 1.9 25 25 A E - 0 0 99 -2,-0.5 2,-0.3 -4,-0.1 25,-0.2 -0.385 27.5-165.0 -71.6 148.7 4.8 6.3 2.8 26 26 A L B -F 16 0B 1 -10,-0.7 -10,-2.1 -2,-0.1 2,-0.4 -0.957 8.8-153.4-136.0 154.1 6.2 2.7 2.8 27 27 A R > - 0 0 143 -2,-0.3 3,-1.3 -12,-0.3 -15,-0.3 -0.987 38.1 -93.0-131.4 139.2 9.3 1.0 4.2 28 28 A E T 3 S+ 0 0 138 -2,-0.4 -15,-0.2 1,-0.3 -14,-0.1 -0.262 117.6 13.6 -50.2 106.6 11.1 -2.2 3.0 29 29 A G T 3 S+ 0 0 46 -17,-3.1 2,-0.4 1,-0.3 -1,-0.3 0.805 95.1 141.7 93.3 34.8 9.4 -4.8 5.2 30 30 A D E < -A 12 0A 20 -3,-1.3 -18,-2.9 -18,-0.5 2,-0.3 -0.866 52.0-116.4-111.8 144.3 6.5 -2.8 6.5 31 31 A R E -A 11 0A 113 -2,-0.4 17,-0.9 -20,-0.2 2,-0.4 -0.596 31.5-166.5 -79.8 134.2 2.9 -4.0 7.0 32 32 A V E -AD 10 47A 0 -22,-2.3 -22,-2.4 -2,-0.3 2,-0.8 -0.954 17.4-147.1-124.7 142.5 0.2 -2.4 4.9 33 33 A D E -AD 9 46A 30 13,-3.0 13,-2.4 -2,-0.4 2,-0.1 -0.766 20.5-161.7-109.7 85.9 -3.6 -2.5 5.2 34 34 A V E +AD 8 45A 3 -26,-1.9 -26,-2.7 -2,-0.8 11,-0.3 -0.426 18.1 169.7 -68.1 137.2 -5.0 -2.3 1.7 35 35 A M E + 0 0 75 9,-2.0 2,-0.3 1,-0.4 10,-0.2 0.749 62.9 18.4-113.1 -51.3 -8.7 -1.3 1.5 36 36 A Q E - D 0 44A 137 8,-2.6 8,-3.0 -29,-0.0 2,-0.5 -0.909 66.3-135.5-126.3 153.7 -9.4 -0.7 -2.2 37 37 A Q E - D 0 43A 128 -2,-0.3 6,-0.2 6,-0.2 5,-0.1 -0.936 19.2-134.9-113.2 124.5 -7.7 -1.7 -5.4 38 38 A C - 0 0 50 4,-2.8 3,-0.1 -2,-0.5 6,-0.0 -0.444 18.7-121.7 -75.2 147.6 -7.2 0.8 -8.2 39 39 A D S S+ 0 0 146 1,-0.2 -1,-0.1 -2,-0.1 4,-0.0 0.961 113.1 51.0 -51.0 -61.4 -8.0 -0.2 -11.8 40 40 A D S S- 0 0 149 1,-0.1 -1,-0.2 -3,-0.0 -2,-0.0 0.854 130.9 -94.3 -45.8 -40.2 -4.5 0.5 -13.1 41 41 A G S S+ 0 0 32 1,-0.2 -1,-0.1 -3,-0.1 -3,-0.1 0.119 82.1 130.8 145.3 -22.8 -3.2 -1.6 -10.2 42 42 A W - 0 0 78 -5,-0.1 -4,-2.8 15,-0.1 2,-0.3 0.023 47.0-134.2 -52.7 166.3 -2.4 0.9 -7.4 43 43 A F E -DE 37 56A 31 13,-2.2 13,-2.2 -6,-0.2 2,-0.5 -0.949 9.1-154.2-129.9 149.8 -3.7 0.2 -3.9 44 44 A V E +DE 36 55A 23 -8,-3.0 -8,-2.6 -2,-0.3 -9,-2.0 -0.940 42.9 105.1-128.2 110.6 -5.5 2.4 -1.3 45 45 A G E -DE 34 54A 0 9,-0.9 9,-1.9 -2,-0.5 2,-0.3 -0.674 61.5 -70.7-153.1-152.5 -5.2 1.5 2.3 46 46 A V E -DE 33 53A 30 -13,-2.4 -13,-3.0 7,-0.2 7,-0.2 -0.921 37.1-122.3-123.5 148.7 -3.6 2.5 5.6 47 47 A S E -D 32 0A 3 5,-2.2 -15,-0.2 -2,-0.3 -21,-0.1 -0.334 5.8-143.0 -82.4 167.0 -0.0 2.2 6.9 48 48 A R S S+ 0 0 124 -17,-0.9 -16,-0.1 3,-0.1 -1,-0.1 0.273 96.6 48.3-112.1 7.0 1.1 0.3 10.0 49 49 A R S S+ 0 0 161 -24,-0.2 -23,-0.1 -18,-0.1 -17,-0.0 0.743 128.0 17.0-111.8 -45.4 3.8 2.8 11.0 50 50 A T S S- 0 0 52 -25,-0.2 3,-0.1 2,-0.1 -2,-0.1 0.421 90.9-133.6-108.2 -3.5 2.1 6.2 10.8 51 51 A Q + 0 0 168 1,-0.2 2,-0.2 -5,-0.0 -3,-0.1 0.828 57.4 146.5 52.8 33.4 -1.4 4.9 10.8 52 52 A K - 0 0 120 -27,-0.1 -5,-2.2 0, 0.0 2,-0.4 -0.580 44.1-132.2 -98.3 162.7 -2.1 7.2 7.9 53 53 A F E + E 0 46A 130 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.949 47.6 100.9-119.2 135.3 -4.5 6.7 4.9 54 54 A G E - E 0 45A 1 -9,-1.9 -9,-0.9 -2,-0.4 2,-0.4 -0.922 62.4 -65.7-176.5-159.2 -3.6 7.4 1.3 55 55 A T E +cE 23 44A 35 -33,-1.4 -31,-1.0 -2,-0.3 -11,-0.2 -0.952 41.4 172.8-122.2 139.6 -2.6 5.8 -2.0 56 56 A F E - E 0 43A 0 -13,-2.2 -13,-2.2 -2,-0.4 2,-0.7 -0.966 42.4 -88.7-142.4 157.5 0.6 4.0 -3.0 57 57 A P >> - 0 0 6 0, 0.0 3,-3.1 0, 0.0 4,-0.6 -0.535 27.7-151.9 -69.8 107.5 2.0 2.0 -5.9 58 58 A G T 34 S+ 0 0 10 -2,-0.7 3,-0.3 1,-0.3 -16,-0.1 0.701 90.5 79.3 -52.4 -18.5 1.0 -1.6 -5.4 59 59 A N T 34 S+ 0 0 123 1,-0.2 -1,-0.3 -47,-0.0 -17,-0.0 0.642 95.1 46.9 -65.2 -13.2 4.2 -2.4 -7.3 60 60 A Y T <4 S+ 0 0 89 -3,-3.1 -47,-1.7 -47,-0.1 -46,-1.2 0.691 112.6 53.6 -98.9 -25.7 6.0 -1.7 -4.1 61 61 A V E < -B 12 0A 5 -4,-0.6 -49,-0.2 -3,-0.3 -30,-0.1 -0.605 66.2-159.0-106.6 168.9 3.7 -3.8 -1.8 62 62 A A E -B 11 0A 27 -51,-1.7 -51,-1.8 -2,-0.2 2,-0.9 -0.998 30.9 -98.9-149.9 147.7 2.6 -7.4 -2.0 63 63 A P E > +B 10 0A 76 0, 0.0 3,-0.6 0, 0.0 -53,-0.2 -0.531 35.0 177.2 -69.8 102.1 -0.3 -9.5 -0.6 64 64 A V T 3 + 0 0 76 -2,-0.9 -54,-0.2 -55,-0.6 -33,-0.0 0.761 65.3 86.9 -76.4 -25.8 1.2 -11.3 2.4 65 65 A S T 3 S- 0 0 70 -56,-1.1 -1,-0.2 1,-0.2 -55,-0.1 0.832 86.6-153.6 -41.7 -38.9 -2.1 -12.9 3.2 66 66 A G < + 0 0 35 -3,-0.6 2,-1.1 2,-0.1 -1,-0.2 -0.618 49.0 3.7 98.2-158.2 -1.1 -15.7 0.8 67 67 A P S S+ 0 0 142 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 -0.526 77.0 173.1 -69.7 98.5 -3.2 -18.0 -1.3 68 68 A S - 0 0 99 -2,-1.1 2,-0.4 2,-0.0 -2,-0.1 -0.705 29.3-119.0-107.5 159.9 -6.8 -16.8 -0.6 69 69 A S 0 0 128 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.801 360.0 360.0-100.8 138.7 -10.1 -17.9 -2.2 70 70 A G 0 0 126 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 -0.256 360.0 360.0-147.6 360.0 -12.3 -15.4 -4.0