==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 24-MAY-05 2CTE . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7769.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 28.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 141 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 110.5 -12.5 -21.1 6.2 2 2 A S + 0 0 129 1,-0.5 2,-0.3 0, 0.0 0, 0.0 0.627 360.0 1.9-126.2 -46.2 -11.7 -18.1 4.0 3 3 A S S S+ 0 0 119 0, 0.0 -1,-0.5 0, 0.0 2,-0.4 -0.849 80.2 79.0-139.8 174.7 -8.0 -17.5 4.0 4 4 A G + 0 0 43 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.981 28.3 120.4 130.4-140.2 -4.8 -19.0 5.5 5 5 A S + 0 0 130 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 0.846 38.3 160.6 39.1 43.8 -2.7 -22.0 4.4 6 6 A S + 0 0 116 -3,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.943 19.8 178.6 -57.7 -51.2 0.2 -19.5 4.0 7 7 A G - 0 0 56 1,-0.1 2,-0.3 2,-0.0 -3,-0.0 0.157 26.1-114.5 66.8 168.9 2.9 -22.2 4.2 8 8 A D - 0 0 158 2,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.869 19.4-161.4-148.1 109.5 6.6 -21.7 3.8 9 9 A I - 0 0 149 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.805 42.3 -94.1 -95.2 124.5 8.7 -23.0 1.0 10 10 A V + 0 0 145 -2,-0.5 2,-0.3 1,-0.0 -1,-0.1 -0.037 67.5 148.5 -35.9 114.3 12.5 -23.2 1.5 11 11 A A - 0 0 84 -3,-0.0 -1,-0.0 2,-0.0 -2,-0.0 -0.923 43.4-122.7-159.8 130.4 13.8 -19.9 0.1 12 12 A R - 0 0 221 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.234 11.0-145.3 -69.1 160.9 16.6 -17.6 0.9 13 13 A L + 0 0 160 1,-0.1 -1,-0.1 54,-0.0 55,-0.0 -0.288 61.9 115.5-123.4 46.6 16.1 -13.9 1.7 14 14 A Q + 0 0 171 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.154 67.5 63.6-106.4 36.9 19.2 -12.4 0.2 15 15 A T S S- 0 0 113 -3,-0.1 2,-0.4 2,-0.0 0, 0.0 -0.888 73.9-117.5-147.5 176.7 17.3 -10.3 -2.4 16 16 A Q - 0 0 133 -2,-0.3 2,-0.2 51,-0.1 51,-0.1 -0.977 23.7-170.5-127.2 137.7 14.8 -7.5 -2.8 17 17 A A E -A 66 0A 59 49,-1.2 49,-1.9 -2,-0.4 2,-0.3 -0.753 7.5-152.2-121.0 168.6 11.3 -7.6 -4.4 18 18 A S E -A 65 0A 74 -2,-0.2 47,-0.3 47,-0.2 2,-0.2 -0.981 12.0-178.5-146.5 130.4 8.7 -5.1 -5.4 19 19 A A E -A 64 0A 33 45,-3.0 45,-3.3 -2,-0.3 2,-0.3 -0.670 12.0-142.4-120.2 175.8 4.9 -5.3 -5.7 20 20 A T E -A 63 0A 78 43,-0.2 2,-0.4 -2,-0.2 43,-0.2 -0.945 3.1-146.3-139.1 159.5 2.0 -3.1 -6.7 21 21 A V E -A 62 0A 7 41,-1.9 41,-1.9 -2,-0.3 2,-0.7 -0.929 15.3-140.9-133.1 109.5 -1.6 -2.3 -5.7 22 22 A A E +A 61 0A 63 -2,-0.4 39,-0.2 39,-0.2 -2,-0.0 -0.559 42.2 150.4 -71.0 109.7 -4.2 -1.4 -8.2 23 23 A I - 0 0 7 37,-1.5 2,-0.1 -2,-0.7 -2,-0.1 -0.964 48.4 -92.3-141.4 157.1 -6.3 1.3 -6.6 24 24 A P >> - 0 0 44 0, 0.0 3,-2.7 0, 0.0 4,-1.3 -0.409 32.1-121.9 -69.7 141.3 -8.4 4.4 -7.6 25 25 A K T 34 S+ 0 0 103 1,-0.3 4,-0.4 2,-0.2 34,-0.0 0.638 113.4 66.9 -57.0 -12.1 -6.7 7.8 -7.7 26 26 A E T 34 S+ 0 0 103 1,-0.2 4,-0.3 2,-0.1 -1,-0.3 0.714 102.3 43.6 -81.5 -22.2 -9.5 8.7 -5.2 27 27 A H T X> S+ 0 0 11 -3,-2.7 4,-0.7 2,-0.2 3,-0.5 0.687 91.5 82.7 -93.5 -23.0 -8.0 6.3 -2.6 28 28 A H H >X S+ 0 0 11 -4,-1.3 4,-1.1 1,-0.3 3,-0.7 0.832 91.5 53.1 -49.6 -34.9 -4.4 7.4 -3.2 29 29 A R H 3> S+ 0 0 158 -4,-0.4 4,-2.9 1,-0.2 3,-0.5 0.895 99.3 59.8 -69.0 -41.2 -5.1 10.3 -0.9 30 30 A F H <4 S+ 0 0 70 -3,-0.5 -1,-0.2 -4,-0.3 -2,-0.2 0.627 109.4 47.0 -62.7 -11.4 -6.4 8.1 1.9 31 31 A V H << S+ 0 0 1 -4,-0.7 -1,-0.3 -3,-0.7 -2,-0.2 0.699 112.6 46.3-100.7 -27.1 -3.0 6.5 1.8 32 32 A I H < S- 0 0 55 -4,-1.1 7,-1.4 -3,-0.5 8,-0.5 0.872 109.2-122.8 -82.6 -41.0 -1.0 9.7 1.8 33 33 A G < - 0 0 20 -4,-2.9 -1,-0.2 5,-0.2 -2,-0.1 -0.386 29.3 -66.5 117.1 164.1 -2.9 11.5 4.6 34 34 A K S S- 0 0 183 1,-0.2 -1,-0.2 -2,-0.1 -2,-0.0 0.933 133.6 -0.1 -51.4 -52.3 -4.8 14.6 5.2 35 35 A N S S- 0 0 146 -3,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.635 128.4 -70.5-110.8 -25.4 -1.7 16.8 4.8 36 36 A G S S+ 0 0 24 -4,-0.1 -3,-0.2 -7,-0.1 4,-0.1 0.583 98.8 107.5 133.7 47.5 0.8 14.1 4.1 37 37 A E > + 0 0 128 -5,-0.1 4,-2.6 2,-0.1 5,-0.2 0.690 65.7 68.8-114.3 -37.0 1.5 12.0 7.2 38 38 A K H > S+ 0 0 66 -6,-0.4 4,-2.5 1,-0.2 -5,-0.2 0.957 102.0 45.9 -47.5 -65.7 -0.2 8.7 6.5 39 39 A L H > S+ 0 0 26 -7,-1.4 4,-3.3 1,-0.2 5,-0.2 0.883 111.5 55.5 -46.0 -45.6 2.2 7.7 3.7 40 40 A Q H > S+ 0 0 96 -8,-0.5 4,-2.0 1,-0.2 -1,-0.2 0.960 107.8 46.0 -53.4 -58.3 5.1 8.7 6.0 41 41 A D H X S+ 0 0 93 -4,-2.6 4,-3.2 1,-0.2 5,-0.3 0.892 115.0 49.5 -52.8 -43.2 4.0 6.5 8.9 42 42 A L H X>S+ 0 0 2 -4,-2.5 4,-3.2 -5,-0.2 5,-0.5 0.967 106.5 52.9 -61.7 -55.6 3.5 3.6 6.4 43 43 A E H <>S+ 0 0 56 -4,-3.3 5,-0.6 3,-0.2 4,-0.3 0.849 120.0 37.4 -48.8 -37.7 6.9 4.0 4.8 44 44 A L H <5S+ 0 0 138 -4,-2.0 3,-0.4 -5,-0.2 -2,-0.2 0.976 115.1 48.3 -78.6 -66.6 8.4 3.8 8.3 45 45 A K H <5S+ 0 0 120 -4,-3.2 -3,-0.2 1,-0.3 -2,-0.2 0.843 128.6 30.4 -42.1 -40.6 6.2 1.2 10.0 46 46 A T T <5S- 0 0 4 -4,-3.2 -1,-0.3 -5,-0.3 21,-0.3 0.633 98.0-143.3 -94.4 -17.9 6.7 -1.0 6.9 47 47 A A T < + 0 0 71 -5,-0.5 -3,-0.2 -3,-0.4 20,-0.2 0.831 55.7 132.9 57.4 33.3 10.1 0.4 6.2 48 48 A T < - 0 0 4 -5,-0.6 2,-0.8 -6,-0.4 18,-0.2 -0.551 66.4-110.1-108.2 174.8 9.3 0.2 2.5 49 49 A K - 0 0 133 16,-2.2 16,-0.4 -2,-0.2 2,-0.2 -0.729 36.7-168.1-108.8 82.0 9.7 2.5 -0.5 50 50 A I - 0 0 17 -2,-0.8 2,-0.4 14,-0.2 14,-0.2 -0.465 2.5-169.9 -71.2 137.9 6.1 3.6 -1.4 51 51 A Q B -B 63 0A 112 12,-1.8 12,-1.8 -2,-0.2 -2,-0.0 -0.945 3.0-167.2-135.7 113.7 5.7 5.4 -4.7 52 52 A I - 0 0 45 -2,-0.4 10,-0.1 10,-0.2 8,-0.1 -0.837 22.3-121.5-103.6 135.3 2.5 7.1 -5.8 53 53 A P - 0 0 24 0, 0.0 -1,-0.0 0, 0.0 9,-0.0 -0.280 39.2 -86.7 -69.8 156.1 1.9 8.3 -9.4 54 54 A R > - 0 0 176 1,-0.1 3,-1.0 2,-0.1 5,-0.2 -0.166 34.8-113.3 -60.8 156.2 1.1 11.9 -10.2 55 55 A P T 3 S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 -30,-0.0 0.496 120.1 45.8 -69.7 -2.5 -2.5 13.1 -10.1 56 56 A D T 3 S+ 0 0 153 3,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.450 91.0 101.4-116.3 -8.5 -2.3 13.6 -13.8 57 57 A D S < S- 0 0 62 -3,-1.0 0, 0.0 2,-0.2 0, 0.0 -0.575 74.8-131.1 -82.3 141.3 -0.7 10.3 -14.7 58 58 A P S S+ 0 0 111 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 0.421 82.0 102.9 -69.7 3.4 -2.8 7.4 -16.1 59 59 A S + 0 0 57 -5,-0.2 -2,-0.2 1,-0.1 -3,-0.0 -0.813 36.2 164.1 -94.8 116.0 -1.2 5.2 -13.4 60 60 A N + 0 0 58 -2,-0.7 -37,-1.5 -8,-0.1 2,-0.5 0.202 47.6 101.5-112.3 12.3 -3.4 4.5 -10.4 61 61 A Q E -A 22 0A 104 -39,-0.2 -39,-0.2 -41,-0.0 2,-0.1 -0.881 64.7-140.6-104.0 123.1 -1.3 1.6 -9.1 62 62 A I E -A 21 0A 2 -41,-1.9 -41,-1.9 -2,-0.5 2,-0.4 -0.421 11.6-135.0 -78.6 154.7 1.0 2.2 -6.2 63 63 A K E -AB 20 51A 100 -12,-1.8 -12,-1.8 -43,-0.2 2,-0.5 -0.941 17.7-172.7-115.7 131.5 4.4 0.6 -6.0 64 64 A I E +A 19 0A 3 -45,-3.3 -45,-3.0 -2,-0.4 2,-0.4 -0.974 6.3 177.0-127.4 120.3 5.8 -1.0 -2.9 65 65 A T E +A 18 0A 33 -2,-0.5 -16,-2.2 -16,-0.4 2,-0.3 -0.931 32.9 67.6-123.0 145.9 9.4 -2.2 -2.6 66 66 A G E S-A 17 0A 2 -49,-1.9 -49,-1.2 -2,-0.4 2,-0.2 -0.998 81.0 -2.9 152.0-150.2 11.3 -3.8 0.4 67 67 A T >> - 0 0 74 -2,-0.3 4,-2.3 -21,-0.3 5,-0.5 -0.521 66.0-112.8 -79.2 144.0 11.3 -6.9 2.5 68 68 A K H >5S+ 0 0 132 1,-0.3 4,-1.0 -2,-0.2 -1,-0.1 0.830 123.2 43.4 -40.9 -39.2 8.8 -9.6 1.9 69 69 A E H >5S+ 0 0 106 2,-0.2 4,-2.2 3,-0.1 -1,-0.3 0.893 113.6 50.7 -76.1 -42.3 7.4 -8.7 5.3 70 70 A G H >5S+ 0 0 2 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.979 110.9 45.3 -59.6 -60.5 7.6 -5.0 4.8 71 71 A I H X5S+ 0 0 9 -4,-2.3 4,-2.9 1,-0.2 -1,-0.2 0.864 111.9 55.7 -51.8 -39.1 5.9 -4.8 1.4 72 72 A E H XX S+ 0 0 56 -4,-2.9 4,-1.3 2,-0.2 3,-0.9 0.951 101.3 56.6 -68.7 -51.2 -11.3 -1.6 0.5 84 84 A E H >< S+ 0 0 141 -4,-2.0 3,-0.6 1,-0.3 -1,-0.2 0.875 103.1 57.0 -47.7 -42.9 -13.2 0.1 3.2 85 85 A Q H >< S+ 0 0 41 -4,-1.6 3,-1.7 1,-0.3 -1,-0.3 0.885 101.5 55.7 -57.4 -40.7 -13.9 3.0 0.8 86 86 A D H << S+ 0 0 123 -4,-1.0 -1,-0.3 -3,-0.9 -2,-0.2 0.827 107.9 49.2 -61.8 -32.3 -15.5 0.6 -1.6 87 87 A K T << S+ 0 0 161 -4,-1.3 -1,-0.3 -3,-0.6 -2,-0.2 -0.012 87.0 146.0 -96.7 28.7 -17.9 -0.6 1.2 88 88 A R < - 0 0 162 -3,-1.7 -3,-0.1 -5,-0.1 -2,-0.0 0.007 32.3-169.4 -58.4 171.0 -18.8 3.0 2.0 89 89 A S - 0 0 133 1,-0.4 -1,-0.1 0, 0.0 -4,-0.0 0.582 57.0 -24.4-130.9 -49.3 -22.3 3.9 3.2 90 90 A G S S- 0 0 49 3,-0.0 2,-1.2 0, 0.0 -1,-0.4 -0.681 97.5 -27.4-147.8-158.4 -22.7 7.7 3.2 91 91 A P - 0 0 128 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.519 66.4-124.4 -69.7 96.0 -20.8 11.1 3.5 92 92 A S - 0 0 99 -2,-1.2 2,-0.9 1,-0.1 -4,-0.0 -0.171 27.2-154.2 -44.4 101.5 -17.7 10.2 5.4 93 93 A S 0 0 126 1,-0.3 -1,-0.1 -2,-0.2 -3,-0.0 -0.748 360.0 360.0 -88.7 107.5 -18.0 12.7 8.3 94 94 A G 0 0 125 -2,-0.9 -1,-0.3 0, 0.0 -2,-0.1 0.840 360.0 360.0 91.2 360.0 -14.6 13.4 9.7