==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 24-MAY-05 2CTF . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8717.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 56.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -77.5 -22.5 -28.4 -8.3 2 2 A S + 0 0 105 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.973 360.0 37.2-165.4 171.8 -21.6 -27.4 -11.9 3 3 A S S S+ 0 0 130 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 0.854 80.5 165.7 42.3 42.3 -22.0 -24.9 -14.6 4 4 A G - 0 0 72 -3,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.370 16.9-177.7 -84.8 166.4 -21.9 -22.2 -11.9 5 5 A S + 0 0 114 -3,-0.1 2,-0.3 -2,-0.1 -3,-0.0 -0.977 6.9 166.1-162.6 150.0 -21.4 -18.5 -12.4 6 6 A S + 0 0 135 -2,-0.3 2,-0.2 0, 0.0 -2,-0.0 -0.946 11.2 134.9-156.8 173.8 -21.2 -15.3 -10.3 7 7 A G + 0 0 56 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.631 20.0 131.7 179.6-116.9 -20.2 -11.6 -10.4 8 8 A E - 0 0 191 -2,-0.2 -1,-0.1 1,-0.0 0, 0.0 0.867 51.8-179.0 34.6 54.4 -21.7 -8.4 -9.2 9 9 A P - 0 0 108 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.059 30.1 -81.3 -69.8-175.2 -18.3 -7.5 -7.7 10 10 A E + 0 0 182 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.730 50.3 169.6 -95.6 142.1 -17.4 -4.4 -5.7 11 11 A K - 0 0 135 -2,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.988 10.2-175.9-149.1 155.0 -16.7 -1.0 -7.4 12 12 A L + 0 0 163 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.992 28.0 115.0-151.4 154.3 -16.2 2.6 -6.5 13 13 A G + 0 0 37 -2,-0.3 2,-0.4 2,-0.0 3,-0.1 0.307 26.1 160.0 142.2 81.5 -15.6 6.0 -8.2 14 14 A Q - 0 0 152 1,-0.2 3,-0.1 3,-0.0 -2,-0.0 -0.957 69.2 -4.7-126.2 143.4 -18.1 8.8 -8.0 15 15 A A S S+ 0 0 108 -2,-0.4 2,-0.4 1,-0.2 -1,-0.2 0.863 88.0 163.6 44.7 42.8 -17.7 12.5 -8.6 16 16 A L + 0 0 116 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.779 9.1 167.5 -95.7 133.6 -14.0 11.9 -9.0 17 17 A T - 0 0 98 -2,-0.4 2,-1.5 -3,-0.1 -3,-0.0 -0.994 44.9-103.4-145.0 149.6 -11.7 14.5 -10.6 18 18 A E + 0 0 181 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.557 58.6 160.4 -75.0 90.4 -8.0 15.2 -10.9 19 19 A V - 0 0 117 -2,-1.5 2,-0.3 2,-0.0 -2,-0.0 -0.713 21.1-160.4-111.0 163.1 -7.6 18.0 -8.3 20 20 A Y - 0 0 196 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.839 2.4-150.6-135.6 172.3 -4.5 19.3 -6.5 21 21 A A - 0 0 84 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.987 5.1-152.3-146.3 153.9 -3.7 21.3 -3.4 22 22 A K + 0 0 178 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.907 43.7 114.1-133.4 106.0 -0.9 23.7 -2.2 23 23 A A - 0 0 83 -2,-0.4 2,-1.6 2,-0.1 -2,-0.0 -0.747 61.1-122.5-173.1 120.9 -0.1 23.9 1.5 24 24 A N + 0 0 176 -2,-0.2 2,-0.3 51,-0.1 -2,-0.0 -0.494 63.9 130.3 -69.5 89.5 2.9 23.0 3.6 25 25 A S - 0 0 88 -2,-1.6 51,-0.5 49,-0.0 2,-0.4 -0.982 63.4-100.1-143.5 153.5 1.3 20.6 6.0 26 26 A F - 0 0 141 -2,-0.3 2,-0.5 49,-0.1 -2,-0.0 -0.609 36.3-160.1 -77.2 123.4 1.9 17.1 7.3 27 27 A T E -A 74 0A 50 47,-1.5 47,-1.8 -2,-0.4 2,-0.5 -0.916 9.4-175.7-109.8 125.7 -0.2 14.5 5.6 28 28 A V E +A 73 0A 77 -2,-0.5 2,-0.3 45,-0.2 45,-0.2 -0.941 10.9 167.6-124.5 110.8 -0.9 11.1 7.2 29 29 A S E -A 72 0A 49 43,-0.7 43,-3.3 -2,-0.5 2,-0.3 -0.842 22.4-137.8-120.4 157.6 -2.8 8.5 5.3 30 30 A S E -A 71 0A 65 -2,-0.3 2,-0.5 41,-0.2 41,-0.2 -0.815 6.4-147.0-114.7 154.8 -3.4 4.8 5.8 31 31 A V E -A 70 0A 3 39,-2.5 39,-1.9 -2,-0.3 2,-0.5 -0.970 23.2-120.8-126.3 119.3 -3.4 1.9 3.4 32 32 A A E +A 69 0A 95 -2,-0.5 37,-0.2 37,-0.2 36,-0.1 -0.387 51.3 156.2 -58.6 106.8 -5.7 -1.2 3.8 33 33 A A - 0 0 6 35,-0.6 -2,-0.0 -2,-0.5 54,-0.0 -0.996 38.6-117.6-139.8 143.0 -3.2 -4.1 4.0 34 34 A P - 0 0 26 0, 0.0 35,-0.0 0, 0.0 34,-0.0 -0.110 7.3-149.9 -69.8 171.5 -3.4 -7.6 5.5 35 35 A S S > S+ 0 0 25 30,-0.1 3,-2.1 33,-0.1 4,-0.2 0.556 83.9 80.6-117.5 -19.7 -1.1 -8.9 8.3 36 36 A W T 3 S+ 0 0 157 1,-0.3 3,-0.2 2,-0.1 -1,-0.0 0.672 98.9 47.1 -62.6 -15.8 -1.0 -12.5 7.3 37 37 A L T >> S+ 0 0 1 1,-0.1 4,-3.3 2,-0.1 3,-0.6 -0.026 71.1 121.5-114.9 28.0 1.7 -11.5 4.8 38 38 A H H <> S+ 0 0 33 -3,-2.1 4,-0.7 1,-0.3 5,-0.2 0.755 78.0 52.3 -61.6 -23.9 3.7 -9.3 7.2 39 39 A R H 3> S+ 0 0 171 -3,-0.2 4,-1.4 -4,-0.2 -1,-0.3 0.748 114.3 41.0 -83.1 -26.2 6.7 -11.6 6.4 40 40 A F H <4 S+ 0 0 138 -3,-0.6 -2,-0.2 2,-0.2 8,-0.1 0.855 111.3 53.9 -87.9 -41.1 6.2 -11.1 2.7 41 41 A I H < S+ 0 0 1 -4,-3.3 -3,-0.2 1,-0.2 -2,-0.2 0.805 118.6 37.8 -63.4 -29.7 5.5 -7.4 2.7 42 42 A I H <>S- 0 0 60 -4,-0.7 7,-0.9 -5,-0.3 5,-0.8 0.900 109.9-130.1 -87.2 -48.9 8.7 -6.8 4.6 43 43 A G T ><5 - 0 0 11 -4,-1.4 3,-1.3 3,-0.2 -2,-0.1 -0.139 21.4 -84.7 111.1 152.3 10.9 -9.4 3.0 44 44 A K T 3 5S+ 0 0 184 1,-0.3 -1,-0.1 -4,-0.1 -4,-0.0 0.921 130.8 19.5 -55.8 -47.2 13.3 -12.2 4.1 45 45 A K T 3 5S- 0 0 178 -3,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.268 118.9 -97.2-118.7 44.7 16.1 -9.7 4.6 46 46 A G T < 5S+ 0 0 32 -3,-1.3 -3,-0.2 1,-0.1 -2,-0.1 0.912 78.2 136.6 38.6 74.7 14.1 -6.5 4.8 47 47 A Q >< + 0 0 115 -5,-0.8 4,-3.0 3,-0.1 5,-0.2 0.740 60.2 55.3-112.6 -45.7 14.5 -5.4 1.2 48 48 A N H > S+ 0 0 72 -6,-0.8 4,-2.1 2,-0.2 5,-0.2 0.942 117.6 36.8 -55.2 -52.1 11.1 -4.2 0.2 49 49 A L H > S+ 0 0 40 -7,-0.9 4,-3.1 2,-0.2 5,-0.4 0.963 116.2 52.1 -66.2 -53.7 10.9 -1.7 3.0 50 50 A A H > S+ 0 0 42 -8,-0.3 4,-2.4 1,-0.2 -2,-0.2 0.902 111.8 48.5 -49.2 -47.0 14.5 -0.7 3.0 51 51 A K H X S+ 0 0 142 -4,-3.0 4,-1.9 2,-0.2 5,-0.3 0.980 114.8 42.4 -58.6 -61.1 14.3 0.0 -0.8 52 52 A I H >X S+ 0 0 12 -4,-2.1 4,-2.9 -5,-0.2 3,-0.6 0.952 117.5 46.1 -50.7 -58.2 11.1 2.1 -0.5 53 53 A T H 3< S+ 0 0 52 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.859 107.9 59.5 -54.4 -37.7 12.3 4.0 2.5 54 54 A Q H 3< S+ 0 0 157 -4,-2.4 -1,-0.3 -5,-0.4 -2,-0.2 0.897 114.0 35.4 -58.8 -42.3 15.7 4.5 0.9 55 55 A Q H << S+ 0 0 148 -4,-1.9 -2,-0.2 -3,-0.6 -1,-0.2 0.799 131.8 32.6 -81.6 -31.2 14.0 6.3 -2.0 56 56 A M < + 0 0 6 -4,-2.9 3,-0.3 -5,-0.3 -1,-0.3 -0.684 64.1 156.2-129.2 78.8 11.5 8.0 0.2 57 57 A P S S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.851 72.5 64.4 -69.8 -36.1 13.0 8.6 3.7 58 58 A K S S+ 0 0 148 -3,-0.1 2,-0.3 2,-0.1 -5,-0.1 0.831 91.6 79.1 -57.1 -33.0 10.5 11.4 4.5 59 59 A V S S- 0 0 5 -3,-0.3 2,-0.6 -6,-0.1 15,-0.2 -0.624 73.7-149.6 -81.7 134.0 7.7 8.9 4.3 60 60 A H E -B 73 0A 99 13,-1.8 13,-0.9 -2,-0.3 2,-0.6 -0.913 4.2-153.4-108.9 118.5 7.3 6.7 7.4 61 61 A I E -B 72 0A 22 -2,-0.6 2,-0.3 11,-0.2 11,-0.2 -0.804 16.3-174.9 -93.8 117.3 6.0 3.1 6.9 62 62 A E E -B 71 0A 88 9,-1.5 9,-0.6 -2,-0.6 2,-0.4 -0.855 9.1-156.3-113.0 147.5 4.1 1.7 9.9 63 63 A F E -B 70 0A 49 -2,-0.3 2,-0.3 7,-0.2 7,-0.2 -0.977 4.6-161.6-126.1 135.2 2.7 -1.8 10.4 64 64 A T - 0 0 28 5,-1.1 5,-0.1 -2,-0.4 -2,-0.0 -0.885 14.1-159.2-116.5 146.9 -0.1 -2.8 12.7 65 65 A E S S+ 0 0 135 -2,-0.3 -1,-0.1 3,-0.1 -30,-0.1 0.856 95.4 21.2 -88.5 -41.5 -1.0 -6.3 14.0 66 66 A G S S+ 0 0 59 1,-0.1 -2,-0.1 3,-0.0 -31,-0.1 0.916 119.9 55.0 -91.7 -55.9 -4.6 -5.7 15.0 67 67 A E S S- 0 0 133 1,-0.1 -1,-0.1 2,-0.1 3,-0.1 0.723 91.6-150.0 -51.1 -20.8 -5.6 -2.6 13.0 68 68 A D + 0 0 72 1,-0.2 -35,-0.6 -36,-0.1 2,-0.3 0.916 57.0 101.7 47.2 51.8 -4.4 -4.7 10.0 69 69 A K E S-A 32 0A 64 -37,-0.2 -5,-1.1 -5,-0.1 2,-0.5 -0.966 70.8-115.3-154.7 167.1 -3.4 -1.5 8.1 70 70 A I E -AB 31 63A 0 -39,-1.9 -39,-2.5 -2,-0.3 2,-0.6 -0.947 21.1-153.4-115.7 122.6 -0.4 0.6 7.2 71 71 A T E -AB 30 62A 29 -9,-0.6 -9,-1.5 -2,-0.5 2,-0.4 -0.830 11.8-164.6 -97.5 121.9 0.0 4.2 8.5 72 72 A L E -AB 29 61A 0 -43,-3.3 -43,-0.7 -2,-0.6 2,-0.4 -0.845 3.6-168.1-107.5 142.1 2.0 6.5 6.3 73 73 A E E +AB 28 60A 68 -13,-0.9 -13,-1.8 -2,-0.4 -45,-0.2 -0.991 39.5 62.8-132.9 127.9 3.5 9.9 7.4 74 74 A G E S-A 27 0A 0 -47,-1.8 -47,-1.5 -2,-0.4 2,-0.3 -0.971 83.5 -17.5 156.3-169.3 4.9 12.6 5.2 75 75 A P >> - 0 0 34 0, 0.0 4,-3.0 0, 0.0 3,-0.7 -0.488 56.6-123.6 -69.8 128.0 4.3 15.1 2.4 76 76 A T H 3> S+ 0 0 90 -51,-0.5 4,-1.1 -2,-0.3 5,-0.1 0.762 112.8 61.1 -40.3 -28.3 1.2 14.4 0.4 77 77 A E H 3> S+ 0 0 165 2,-0.2 4,-1.0 3,-0.1 -1,-0.3 0.980 117.1 24.1 -65.7 -58.8 3.6 14.3 -2.5 78 78 A D H X> S+ 0 0 35 -3,-0.7 4,-3.1 2,-0.2 3,-0.5 0.925 117.5 62.1 -73.3 -47.0 5.7 11.4 -1.4 79 79 A V H 3X S+ 0 0 1 -4,-3.0 4,-2.5 1,-0.3 5,-0.2 0.823 104.0 52.4 -48.0 -34.3 3.1 9.8 0.8 80 80 A S H 3X S+ 0 0 55 -4,-1.1 4,-1.3 -5,-0.5 -1,-0.3 0.900 111.4 44.1 -70.3 -42.3 1.1 9.4 -2.4 81 81 A V H