==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 24-MAY-05 2CTJ . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7402.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.9 -20.4 45.6 10.9 2 2 A S - 0 0 121 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.936 360.0-163.0-141.2 115.0 -17.1 44.3 9.4 3 3 A S - 0 0 116 -2,-0.4 -1,-0.1 1,-0.0 0, 0.0 0.921 24.4-154.2 -59.9 -46.1 -16.4 40.6 8.7 4 4 A G + 0 0 73 1,-0.1 2,-0.2 0, 0.0 -2,-0.0 0.968 29.4 164.1 68.8 54.6 -12.7 41.3 8.3 5 5 A S - 0 0 105 2,-0.0 2,-0.3 1,-0.0 -1,-0.1 -0.468 22.9-147.1 -98.7 172.4 -11.8 38.4 6.1 6 6 A S - 0 0 116 -2,-0.2 2,-0.0 2,-0.1 -1,-0.0 -0.914 13.9-142.0-137.3 163.3 -8.7 37.7 3.9 7 7 A G + 0 0 89 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.388 57.7 116.9-124.4 55.8 -7.9 36.0 0.7 8 8 A S - 0 0 95 -2,-0.0 2,-0.2 0, 0.0 -2,-0.1 -0.883 46.5-145.8-123.0 154.2 -4.5 34.3 1.3 9 9 A I - 0 0 145 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.714 10.6-131.5-114.6 166.5 -3.3 30.7 1.4 10 10 A Q - 0 0 143 -2,-0.2 2,-1.3 2,-0.1 0, 0.0 -0.844 21.8-118.2-118.4 155.3 -0.8 28.8 3.4 11 11 A K + 0 0 184 -2,-0.3 2,-1.0 2,-0.0 -2,-0.0 -0.295 48.1 166.4 -85.7 51.6 2.0 26.4 2.4 12 12 A D + 0 0 133 -2,-1.3 2,-0.3 2,-0.0 -2,-0.1 -0.578 15.1 143.8 -73.0 103.0 0.4 23.5 4.3 13 13 A L - 0 0 169 -2,-1.0 2,-0.4 0, 0.0 -2,-0.0 -0.992 37.3-146.7-143.2 149.0 2.2 20.4 3.1 14 14 A A - 0 0 80 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.956 8.5-150.7-120.4 135.2 3.5 17.2 4.6 15 15 A N S S+ 0 0 142 -2,-0.4 54,-0.4 53,-0.1 2,-0.4 0.945 86.6 54.8 -65.3 -49.8 6.6 15.2 3.6 16 16 A I S S- 0 0 82 52,-0.1 2,-0.5 53,-0.1 50,-0.0 -0.701 71.0-160.6 -90.1 137.4 5.2 11.8 4.5 17 17 A A - 0 0 30 50,-2.7 2,-0.7 -2,-0.4 55,-0.1 -0.945 4.5-154.6-122.7 111.9 1.8 10.7 3.0 18 18 A E + 0 0 111 -2,-0.5 2,-0.4 48,-0.1 48,-0.2 -0.752 19.5 178.3 -88.2 114.0 -0.1 7.9 4.7 19 19 A V E -A 65 0A 54 46,-1.3 46,-2.0 -2,-0.7 2,-0.3 -0.952 9.7-160.7-120.0 135.9 -2.4 6.1 2.2 20 20 A E E -A 64 0A 89 -2,-0.4 2,-0.3 44,-0.2 44,-0.2 -0.737 4.6-164.1-111.6 161.0 -4.6 3.1 3.0 21 21 A V E -A 63 0A 22 42,-1.4 42,-1.6 -2,-0.3 2,-0.8 -0.934 25.5-110.9-140.7 163.1 -6.2 0.5 0.7 22 22 A S E +A 62 0A 109 -2,-0.3 40,-0.2 40,-0.2 39,-0.0 -0.846 51.3 146.7-101.1 106.3 -8.9 -2.1 0.8 23 23 A I - 0 0 5 38,-1.6 -2,-0.1 -2,-0.8 2,-0.0 -1.000 44.6-115.2-142.9 138.6 -7.5 -5.6 0.6 24 24 A P >> - 0 0 41 0, 0.0 4,-1.6 0, 0.0 3,-1.0 -0.337 20.8-127.2 -69.7 150.0 -8.6 -9.0 2.2 25 25 A A H 3> S+ 0 0 31 1,-0.3 4,-1.4 2,-0.2 5,-0.2 0.819 107.1 69.0 -66.2 -31.2 -6.5 -10.7 4.8 26 26 A K H 34 S+ 0 0 129 1,-0.2 4,-0.4 2,-0.2 -1,-0.3 0.771 107.4 39.3 -58.6 -25.5 -6.5 -13.9 2.7 27 27 A L H <> S+ 0 0 7 -3,-1.0 4,-3.0 2,-0.1 -1,-0.2 0.810 103.4 69.5 -92.5 -36.9 -4.4 -12.0 0.2 28 28 A H H X S+ 0 0 5 -4,-1.6 4,-3.1 1,-0.2 5,-0.3 0.945 97.2 50.1 -44.1 -68.7 -2.2 -10.2 2.6 29 29 A N H X S+ 0 0 101 -4,-1.4 4,-2.4 1,-0.3 -1,-0.2 0.856 113.7 48.6 -39.1 -46.0 -0.3 -13.3 3.8 30 30 A S H 4 S+ 0 0 35 -4,-0.4 -1,-0.3 -5,-0.2 -2,-0.2 0.957 112.2 46.4 -62.0 -52.9 0.3 -14.1 0.2 31 31 A L H < S+ 0 0 1 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.930 113.2 49.8 -55.7 -49.0 1.5 -10.6 -0.7 32 32 A I H < S- 0 0 54 -4,-3.1 7,-0.9 -5,-0.2 6,-0.4 0.924 101.8-156.3 -56.9 -47.5 3.8 -10.5 2.3 33 33 A G < - 0 0 26 -4,-2.4 3,-0.3 -5,-0.3 -1,-0.1 -0.389 32.2 -64.9 97.4-177.9 5.3 -13.9 1.5 34 34 A T S S+ 0 0 129 1,-0.2 -1,-0.2 -2,-0.1 -2,-0.1 0.865 135.8 20.4 -77.6 -38.4 7.0 -16.5 3.6 35 35 A K S S- 0 0 156 -3,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.130 115.3 -99.8-121.9 35.3 10.0 -14.4 4.5 36 36 A G S > S+ 0 0 21 -3,-0.3 4,-0.7 1,-0.1 -3,-0.2 0.893 87.0 126.3 47.9 46.9 8.5 -11.0 3.8 37 37 A R H > + 0 0 136 -5,-0.4 4,-3.0 2,-0.2 5,-0.4 0.861 59.6 58.3 -97.2 -51.2 10.2 -10.8 0.4 38 38 A L H 4 S+ 0 0 74 -6,-0.4 4,-0.5 1,-0.2 -5,-0.2 0.768 121.4 33.2 -51.1 -26.0 7.3 -10.2 -2.0 39 39 A I H > S+ 0 0 12 -7,-0.9 4,-2.6 2,-0.1 -1,-0.2 0.818 113.9 56.8 -97.9 -42.1 6.8 -7.0 0.1 40 40 A R H X S+ 0 0 176 -4,-0.7 4,-1.7 -8,-0.3 -2,-0.2 0.924 107.1 50.5 -55.7 -48.0 10.3 -6.2 1.1 41 41 A S H X S+ 0 0 66 -4,-3.0 4,-3.2 1,-0.2 3,-0.3 0.932 110.8 48.6 -56.8 -49.3 11.4 -6.0 -2.5 42 42 A I H > S+ 0 0 12 -4,-0.5 4,-2.5 -5,-0.4 5,-0.3 0.910 106.7 56.5 -58.2 -44.6 8.6 -3.7 -3.5 43 43 A M H X>S+ 0 0 37 -4,-2.6 6,-1.0 2,-0.2 4,-0.8 0.861 117.4 35.7 -55.9 -37.3 9.4 -1.4 -0.5 44 44 A E H ><5S+ 0 0 141 -4,-1.7 3,-0.7 -3,-0.3 -2,-0.2 0.964 113.3 53.5 -80.6 -61.5 12.9 -1.1 -1.8 45 45 A E H 3<5S+ 0 0 153 -4,-3.2 -3,-0.2 1,-0.3 -2,-0.2 0.870 113.9 45.9 -40.1 -48.3 12.3 -1.1 -5.6 46 46 A C H 3<5S- 0 0 31 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.862 135.0 -88.0 -65.9 -36.6 9.8 1.8 -5.1 47 47 A G T <<5S- 0 0 60 -4,-0.8 -3,-0.2 -3,-0.7 -4,-0.1 -0.109 71.8 -56.7 158.3 -48.9 12.2 3.6 -2.8 48 48 A G S > - 0 0 99 1,-0.1 4,-1.8 6,-0.0 5,-0.6 -0.718 17.6-132.1 -89.5 133.2 -3.7 -9.4 12.0 56 56 A E T 45S+ 0 0 168 -2,-0.4 -1,-0.1 1,-0.2 -31,-0.1 0.870 106.3 60.2 -47.5 -42.1 -6.2 -12.1 10.8 57 57 A G T 45S+ 0 0 65 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 0.955 103.1 47.7 -52.2 -58.7 -7.3 -12.4 14.5 58 58 A S T 45S- 0 0 109 -3,-0.2 -1,-0.2 1,-0.1 -2,-0.2 0.922 105.3-131.5 -49.5 -51.4 -8.4 -8.8 14.8 59 59 A G T <5 + 0 0 53 -4,-1.8 2,-0.5 1,-0.2 -3,-0.1 0.840 49.5 149.4 98.3 43.8 -10.3 -9.0 11.5 60 60 A S < - 0 0 51 -5,-0.6 -1,-0.2 2,-0.1 -2,-0.1 -0.942 29.9-171.3-115.1 118.6 -9.2 -5.9 9.7 61 61 A D + 0 0 86 -2,-0.5 -38,-1.6 -8,-0.1 2,-0.4 -0.127 56.5 106.1 -96.4 36.3 -9.0 -5.9 5.9 62 62 A T E -A 22 0A 70 -40,-0.2 2,-0.4 -42,-0.0 -40,-0.2 -0.928 51.8-158.9-119.7 142.6 -7.3 -2.5 5.8 63 63 A V E -A 21 0A 0 -42,-1.6 -42,-1.4 -2,-0.4 2,-0.5 -0.957 2.9-155.1-122.8 138.7 -3.7 -1.7 5.1 64 64 A V E -AB 20 52A 41 -12,-1.5 -12,-2.9 -2,-0.4 2,-0.4 -0.950 10.7-170.4-116.3 125.8 -1.7 1.4 6.0 65 65 A I E -AB 19 51A 1 -46,-2.0 -46,-1.3 -2,-0.5 2,-0.3 -0.883 3.0-161.0-115.6 146.2 1.3 2.6 4.0 66 66 A R E + B 0 50A 129 -16,-2.9 -16,-2.1 -2,-0.4 -48,-0.1 -0.929 39.9 65.1-125.9 149.7 3.9 5.3 4.9 67 67 A G S S- 0 0 8 -2,-0.3 -50,-2.7 -18,-0.2 2,-0.3 -0.821 84.3 -20.7 136.5-176.2 6.4 7.2 2.8 68 68 A P >> - 0 0 65 0, 0.0 4,-2.9 0, 0.0 3,-2.2 -0.497 54.1-131.1 -69.8 126.1 6.6 9.8 -0.0 69 69 A S H 3> S+ 0 0 70 -54,-0.4 4,-3.2 -2,-0.3 5,-0.4 0.900 106.2 64.9 -39.4 -58.5 3.5 9.9 -2.2 70 70 A S H 34 S+ 0 0 90 1,-0.2 4,-0.4 2,-0.2 -1,-0.3 0.816 117.0 29.7 -35.5 -41.2 5.5 9.7 -5.4 71 71 A D H X> S+ 0 0 10 -3,-2.2 4,-2.9 2,-0.2 3,-1.3 0.890 113.3 61.5 -87.8 -47.3 6.4 6.2 -4.1 72 72 A V H 3X S+ 0 0 1 -4,-2.9 4,-2.2 1,-0.3 5,-0.2 0.871 103.0 53.6 -46.5 -43.1 3.3 5.4 -2.1 73 73 A E H 3X S+ 0 0 125 -4,-3.2 4,-1.7 -5,-0.2 -1,-0.3 0.828 112.1 45.0 -63.2 -32.1 1.3 5.7 -5.4 74 74 A K H <> S+ 0 0 101 -3,-1.3 4,-1.3 -5,-0.4 -2,-0.2 0.889 112.4 49.2 -78.4 -42.1 3.7 3.1 -7.0 75 75 A A H X S+ 0 0 1 -4,-2.9 4,-1.7 2,-0.2 -2,-0.2 0.822 113.4 48.9 -66.5 -31.6 3.7 0.7 -4.0 76 76 A K H X S+ 0 0 70 -4,-2.2 4,-2.5 -5,-0.3 5,-0.2 0.949 108.7 49.5 -73.0 -51.3 -0.1 0.9 -4.0 77 77 A K H X S+ 0 0 121 -4,-1.7 4,-1.4 1,-0.2 -2,-0.2 0.786 113.3 50.6 -58.5 -27.4 -0.6 0.2 -7.7 78 78 A Q H X S+ 0 0 66 -4,-1.3 4,-2.1 2,-0.2 -1,-0.2 0.892 108.7 48.9 -77.8 -42.4 1.7 -2.7 -7.3 79 79 A L H X S+ 0 0 0 -4,-1.7 4,-3.0 2,-0.2 5,-0.3 0.904 110.1 52.4 -64.0 -42.6 -0.1 -4.2 -4.3 80 80 A L H X S+ 0 0 64 -4,-2.5 4,-2.2 2,-0.2 5,-0.3 0.947 109.3 48.6 -58.8 -51.4 -3.4 -4.0 -6.1 81 81 A H H X S+ 0 0 98 -4,-1.4 4,-2.4 -5,-0.2 -2,-0.2 0.941 118.5 39.9 -54.5 -52.1 -2.2 -5.8 -9.2 82 82 A L H X S+ 0 0 49 -4,-2.1 4,-2.8 2,-0.2 5,-0.3 0.991 110.3 56.1 -61.7 -63.9 -0.6 -8.6 -7.2 83 83 A A H X S+ 0 0 3 -4,-3.0 4,-1.0 1,-0.3 -1,-0.2 0.848 114.6 41.8 -34.8 -50.7 -3.4 -9.0 -4.6 84 84 A E H < S+ 0 0 132 -4,-2.2 3,-0.4 -5,-0.3 -1,-0.3 0.927 113.9 52.0 -66.5 -46.3 -5.8 -9.5 -7.4 85 85 A E H < S+ 0 0 88 -4,-2.4 -2,-0.2 -5,-0.3 -3,-0.2 0.959 98.6 63.6 -54.6 -57.0 -3.4 -11.8 -9.4 86 86 A K H < S+ 0 0 69 -4,-2.8 2,-0.6 -5,-0.1 -1,-0.2 0.843 79.4 96.1 -34.5 -49.4 -2.7 -14.1 -6.4 87 87 A Q S < S- 0 0 56 -4,-1.0 2,-0.5 -3,-0.4 -1,-0.1 -0.271 71.8-154.0 -50.9 99.7 -6.4 -15.0 -6.5 88 88 A T + 0 0 137 -2,-0.6 2,-0.3 4,-0.1 -1,-0.1 -0.687 35.3 123.8 -84.7 127.1 -6.2 -18.2 -8.6 89 89 A K - 0 0 146 -2,-0.5 2,-0.2 0, 0.0 0, 0.0 -0.973 62.9 -63.5-167.5 173.7 -9.3 -19.1 -10.5 90 90 A S S S+ 0 0 115 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.511 109.0 23.8 -72.8 133.3 -10.8 -19.8 -14.0 91 91 A G S S- 0 0 63 -2,-0.2 -1,-0.1 2,-0.0 0, 0.0 0.965 82.6-142.4 75.8 82.7 -10.6 -17.0 -16.4 92 92 A P - 0 0 121 0, 0.0 2,-0.5 0, 0.0 -4,-0.1 -0.154 9.9-122.4 -69.8 167.6 -7.8 -14.6 -15.4 93 93 A S - 0 0 97 -9,-0.1 2,-0.2 -8,-0.0 -2,-0.0 -0.964 18.3-144.9-120.2 123.0 -7.9 -10.8 -15.7 94 94 A S 0 0 125 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.487 360.0 360.0 -82.8 153.4 -5.3 -8.8 -17.8 95 95 A G 0 0 96 -2,-0.2 -1,-0.1 0, 0.0 -14,-0.0 -0.613 360.0 360.0-152.1 360.0 -4.1 -5.4 -16.7