==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN, RNA BINDING PROTEIN 24-MAY-05 2CTK . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8806.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 46.6 10.1 -12.8 -23.6 2 2 A S + 0 0 127 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.994 360.0 134.2-140.8 131.4 8.6 -13.9 -20.3 3 3 A S + 0 0 134 -2,-0.4 2,-0.1 0, 0.0 0, 0.0 -0.982 20.4 82.3-165.8 164.2 8.5 -17.3 -18.6 4 4 A G - 0 0 71 -2,-0.3 2,-0.2 1,-0.1 0, 0.0 -0.169 35.4-157.3 112.2 153.2 9.0 -19.1 -15.3 5 5 A S + 0 0 128 -2,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.814 22.2 143.7-169.7 124.8 7.0 -19.8 -12.2 6 6 A S + 0 0 95 -2,-0.2 0, 0.0 1,-0.0 0, 0.0 -0.929 4.9 151.0-165.7 138.8 7.9 -20.7 -8.6 7 7 A G + 0 0 64 -2,-0.3 2,-0.3 2,-0.0 -1,-0.0 -0.188 16.0 169.4-171.1 66.7 6.7 -19.9 -5.1 8 8 A K + 0 0 175 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.621 5.2 169.2 -87.2 144.8 7.3 -22.5 -2.4 9 9 A E - 0 0 144 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.930 17.8-171.4-158.5 130.2 6.7 -21.8 1.3 10 10 A A + 0 0 107 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.854 32.7 131.5-128.0 96.7 6.5 -23.9 4.4 11 11 A L - 0 0 134 -2,-0.5 2,-0.4 2,-0.0 58,-0.1 -0.970 25.6-176.0-149.1 129.5 5.3 -22.1 7.5 12 12 A E + 0 0 196 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.974 23.8 134.4-131.1 119.6 2.7 -23.1 10.2 13 13 A A - 0 0 62 -2,-0.4 -2,-0.0 1,-0.1 54,-0.0 -0.934 42.6-146.2-152.2 172.9 1.7 -20.8 13.0 14 14 A L S S+ 0 0 154 -2,-0.3 -1,-0.1 2,-0.1 53,-0.1 0.748 78.7 71.0-111.8 -46.6 -1.3 -19.5 15.0 15 15 A V S S- 0 0 105 1,-0.1 -1,-0.1 51,-0.0 51,-0.0 -0.541 80.9-123.8 -78.3 138.7 -0.3 -16.0 16.0 16 16 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 51,-0.3 0.011 21.1-138.8 -69.8-178.9 -0.0 -13.3 13.3 17 17 A V E -A 66 0A 73 49,-2.4 49,-1.6 47,-0.1 2,-0.4 -0.994 9.3-120.4-147.1 150.4 3.0 -11.1 12.5 18 18 A T E -A 65 0A 92 -2,-0.3 47,-0.3 47,-0.3 2,-0.2 -0.747 31.5-176.4 -94.4 137.6 3.8 -7.5 11.6 19 19 A I E -A 64 0A 38 45,-2.1 45,-0.9 -2,-0.4 2,-0.4 -0.591 21.7-116.9-120.8-176.8 5.5 -6.6 8.3 20 20 A E E -A 63 0A 143 43,-0.2 2,-0.4 -2,-0.2 43,-0.2 -0.990 21.8-171.0-130.6 129.0 6.8 -3.5 6.5 21 21 A V E -A 62 0A 1 41,-2.4 41,-2.2 -2,-0.4 2,-0.6 -0.968 24.3-125.6-122.3 132.7 5.5 -2.1 3.2 22 22 A E E +A 61 0A 155 -2,-0.4 39,-0.2 39,-0.2 -2,-0.0 -0.637 47.0 148.3 -78.1 117.5 7.2 0.7 1.3 23 23 A V - 0 0 4 37,-3.3 2,-0.2 -2,-0.6 -2,-0.1 -0.967 47.0-113.7-154.4 134.3 4.7 3.5 0.6 24 24 A P >> - 0 0 51 0, 0.0 3,-2.8 0, 0.0 4,-1.2 -0.479 19.1-135.7 -69.8 130.1 4.9 7.3 0.2 25 25 A F H 3> S+ 0 0 73 1,-0.3 4,-0.9 -2,-0.2 34,-0.1 0.708 103.3 73.0 -57.5 -18.9 3.2 9.3 3.0 26 26 A D H 34 S+ 0 0 107 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.672 102.0 41.2 -69.8 -16.4 1.8 11.4 0.1 27 27 A L H X> S+ 0 0 0 -3,-2.8 4,-2.2 2,-0.1 3,-1.8 0.732 94.6 80.7-100.0 -30.9 -0.5 8.5 -0.7 28 28 A H H >X S+ 0 0 1 -4,-1.2 4,-2.9 1,-0.3 3,-0.8 0.911 87.8 56.0 -38.9 -64.8 -1.5 7.5 2.8 29 29 A R H 3X S+ 0 0 144 -4,-0.9 4,-1.4 1,-0.3 -1,-0.3 0.807 113.7 43.5 -39.8 -35.6 -4.1 10.3 3.1 30 30 A Y H <4 S+ 0 0 122 -3,-1.8 -1,-0.3 2,-0.2 -2,-0.3 0.829 114.4 49.2 -81.3 -34.6 -5.5 8.7 -0.1 31 31 A V H << S+ 0 0 17 -4,-2.2 -2,-0.2 -3,-0.8 8,-0.2 0.948 115.4 41.9 -69.5 -50.7 -5.1 5.1 1.2 32 32 A I H < S- 0 0 53 -4,-2.9 7,-0.8 -5,-0.2 6,-0.3 0.972 101.2-153.8 -61.2 -57.3 -6.7 5.7 4.6 33 33 A G < - 0 0 27 -4,-1.4 -1,-0.1 -5,-0.4 -2,-0.1 -0.407 41.2 -40.8 106.5 175.2 -9.6 7.9 3.3 34 34 A Q S S- 0 0 193 1,-0.2 -1,-0.2 -2,-0.1 -2,-0.1 0.870 138.8 -12.7 -42.0 -46.2 -11.8 10.6 4.7 35 35 A K S S- 0 0 186 -3,-0.2 -2,-0.2 0, 0.0 -1,-0.2 0.638 117.5 -70.1-124.9 -46.4 -12.0 8.6 8.0 36 36 A G S > S+ 0 0 27 -4,-0.1 4,-0.6 -5,-0.0 -3,-0.2 0.423 88.5 118.7 151.1 39.9 -10.6 5.1 7.2 37 37 A S H >> + 0 0 72 -5,-0.2 4,-1.6 2,-0.2 3,-0.7 0.920 66.8 64.2 -88.6 -56.0 -13.0 3.2 5.0 38 38 A G H 34 S+ 0 0 43 -6,-0.3 4,-0.4 1,-0.3 3,-0.3 0.829 111.6 40.7 -35.1 -46.4 -10.9 2.5 1.9 39 39 A I H >> S+ 0 0 11 -7,-0.8 4,-1.9 1,-0.2 3,-1.6 0.848 102.3 69.5 -74.2 -35.5 -8.6 0.4 4.1 40 40 A R H >S+ 0 0 19 -3,-1.6 4,-2.2 -4,-0.4 5,-1.0 0.979 109.9 52.4 -75.4 -62.0 -8.9 -4.7 3.0 43 43 A M H <5S+ 0 0 53 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.781 118.9 41.9 -45.1 -29.1 -8.8 -5.5 6.7 44 44 A D H <5S+ 0 0 113 -4,-1.5 -1,-0.3 -5,-0.3 -2,-0.2 0.802 123.1 37.3 -88.7 -34.0 -12.2 -7.1 6.1 45 45 A E H <5S+ 0 0 136 -4,-1.4 -3,-0.2 -3,-0.4 -2,-0.2 0.964 127.7 31.6 -80.9 -62.3 -11.3 -8.8 2.8 46 46 A F T <5S- 0 0 46 -4,-2.2 -3,-0.2 -5,-0.1 28,-0.2 0.546 104.6-130.7 -73.4 -6.2 -7.7 -9.9 3.4 47 47 A E < + 0 0 137 -5,-1.0 2,-0.2 1,-0.2 -4,-0.2 0.947 64.8 118.7 54.5 53.7 -8.6 -10.3 7.0 48 48 A V - 0 0 13 -6,-0.3 2,-0.5 -5,-0.1 18,-0.2 -0.765 64.2-110.9-136.4-178.4 -5.6 -8.4 8.3 49 49 A N E -B 65 0A 55 16,-2.5 16,-3.1 -2,-0.2 2,-0.5 -0.968 24.7-166.7-125.9 118.0 -4.7 -5.3 10.2 50 50 A I E -B 64 0A 11 -2,-0.5 2,-0.5 14,-0.2 14,-0.2 -0.884 2.9-170.1-106.6 130.9 -3.1 -2.2 8.5 51 51 A H E -B 63 0A 117 12,-3.1 12,-2.0 -2,-0.5 -2,-0.0 -0.976 6.5-155.8-123.7 125.8 -1.5 0.5 10.6 52 52 A V - 0 0 45 -2,-0.5 2,-0.1 10,-0.2 10,-0.1 -0.812 23.6-113.6-102.5 138.8 -0.3 3.9 9.1 53 53 A P - 0 0 20 0, 0.0 5,-0.1 0, 0.0 9,-0.0 -0.430 37.3-105.2 -69.8 138.3 2.4 6.0 10.7 54 54 A A >>> - 0 0 35 -2,-0.1 3,-0.9 1,-0.1 4,-0.8 -0.053 25.9-113.2 -57.7 163.5 1.3 9.4 12.1 55 55 A P T 345S+ 0 0 88 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.810 115.2 63.1 -69.7 -31.2 2.2 12.6 10.2 56 56 A E T 345S+ 0 0 167 1,-0.2 -2,-0.1 2,-0.1 0, 0.0 0.610 102.8 52.5 -69.8 -10.8 4.5 13.8 12.9 57 57 A L T <45S- 0 0 109 -3,-0.9 -1,-0.2 2,-0.1 3,-0.1 0.755 87.9-154.0 -94.0 -30.4 6.6 10.7 12.1 58 58 A Q T <5 + 0 0 161 -4,-0.8 2,-0.3 -3,-0.3 -33,-0.1 0.852 37.2 158.2 57.5 35.9 6.9 11.4 8.4 59 59 A S < - 0 0 44 -5,-0.7 -1,-0.2 1,-0.1 -2,-0.1 -0.729 36.6-166.9 -95.0 141.0 7.4 7.6 7.9 60 60 A D + 0 0 82 -2,-0.3 -37,-3.3 -3,-0.1 2,-0.7 0.166 62.6 98.5-108.6 15.1 6.7 6.0 4.5 61 61 A I E -A 22 0A 51 -39,-0.2 2,-0.3 -41,-0.0 -39,-0.2 -0.890 60.0-157.4-109.7 106.1 6.8 2.4 5.9 62 62 A I E -A 21 0A 1 -41,-2.2 -41,-2.4 -2,-0.7 2,-0.5 -0.612 9.7-139.0 -83.1 138.4 3.3 1.0 6.7 63 63 A A E -AB 20 51A 33 -12,-2.0 -12,-3.1 -2,-0.3 2,-0.5 -0.853 16.4-169.5-101.5 128.3 3.0 -1.8 9.2 64 64 A I E -AB 19 50A 1 -45,-0.9 -45,-2.1 -2,-0.5 2,-0.4 -0.964 4.5-159.4-121.4 120.5 0.7 -4.7 8.5 65 65 A T E +AB 18 49A 37 -16,-3.1 -16,-2.5 -2,-0.5 2,-0.3 -0.780 40.8 84.1 -99.4 140.2 -0.2 -7.3 11.1 66 66 A G E S-A 17 0A 8 -49,-1.6 -49,-2.4 -2,-0.4 2,-0.1 -0.891 77.9 -37.1 155.5 175.3 -1.5 -10.8 10.3 67 67 A L >> - 0 0 65 -51,-0.3 4,-3.0 -2,-0.3 3,-1.3 -0.398 56.3-116.5 -65.3 135.5 -0.7 -14.3 9.3 68 68 A A H 3> S+ 0 0 30 1,-0.3 4,-1.3 2,-0.2 -1,-0.1 0.797 119.4 55.4 -39.9 -34.1 2.2 -14.6 6.8 69 69 A A H 3> S+ 0 0 53 2,-0.2 4,-1.4 1,-0.2 -1,-0.3 0.916 111.9 39.8 -68.3 -44.6 -0.4 -16.0 4.4 70 70 A N H <> S+ 0 0 26 -3,-1.3 4,-2.9 1,-0.2 5,-0.3 0.866 109.6 60.3 -72.7 -37.5 -2.7 -13.0 4.7 71 71 A L H X S+ 0 0 6 -4,-3.0 4,-2.8 1,-0.2 5,-0.2 0.841 104.1 52.6 -58.7 -34.2 0.2 -10.6 4.7 72 72 A D H X S+ 0 0 95 -4,-1.3 4,-2.3 -5,-0.3 -1,-0.2 0.979 112.4 40.8 -66.1 -58.4 1.2 -11.9 1.3 73 73 A R H X S+ 0 0 135 -4,-1.4 4,-1.2 2,-0.2 -2,-0.2 0.904 121.8 44.3 -57.2 -43.9 -2.2 -11.4 -0.4 74 74 A A H >X S+ 0 0 1 -4,-2.9 4,-1.9 2,-0.2 3,-1.2 0.977 111.9 49.5 -65.5 -57.9 -2.6 -8.1 1.4 75 75 A K H 3X S+ 0 0 75 -4,-2.8 4,-2.2 1,-0.3 5,-0.2 0.843 108.9 56.1 -50.3 -36.3 0.9 -6.7 0.8 76 76 A A H 3X S+ 0 0 49 -4,-2.3 4,-1.4 -5,-0.2 -1,-0.3 0.842 105.7 51.2 -66.2 -34.1 0.4 -7.7 -2.9 77 77 A G H X S+ 0 0 47 -4,-1.9 4,-2.2 -5,-0.2 3,-1.0 0.966 113.2 43.0 -70.0 -54.8 -2.2 5.3 -7.7 86 86 A Q H 3X>S+ 0 0 84 -4,-2.7 4,-2.7 1,-0.3 5,-0.5 0.896 106.1 63.5 -58.4 -42.2 1.0 7.2 -8.3 87 87 A A H 3X5S+ 0 0 53 -4,-1.3 4,-0.8 -5,-0.3 -1,-0.3 0.808 114.4 34.4 -52.6 -31.1 0.8 6.4 -12.0 88 88 A E H X5S+ 0 0 110 -4,-2.7 4,-2.6 -5,-0.4 3,-1.1 0.851 102.8 66.6 -87.1 -40.3 1.5 11.6 -11.1 91 91 A D H 3X