==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN, RNA BINDING PROTEIN 24-MAY-05 2CTL . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7651.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 63.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 30.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.0 -3.9 -43.2 21.9 2 2 A S + 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.821 360.0 163.9-159.2 113.6 -1.8 -40.1 21.4 3 3 A S + 0 0 127 -2,-0.3 0, 0.0 2,-0.0 0, 0.0 -0.823 13.0 164.7-127.3 166.6 -1.3 -38.0 18.3 4 4 A G + 0 0 73 -2,-0.3 2,-0.8 0, 0.0 -1,-0.0 -0.006 15.0 152.9-179.3 58.5 -0.0 -34.6 17.4 5 5 A S + 0 0 127 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.845 26.2 123.1-103.3 102.4 0.7 -34.0 13.8 6 6 A S - 0 0 109 -2,-0.8 2,-0.2 0, 0.0 0, 0.0 -0.897 49.7-132.9-161.4 127.4 0.4 -30.3 12.9 7 7 A G - 0 0 52 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.585 36.1 -99.4 -84.3 143.8 2.8 -27.8 11.4 8 8 A E - 0 0 164 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.070 29.7-172.2 -54.7 159.0 3.2 -24.3 12.9 9 9 A Q - 0 0 136 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 0.573 4.9-167.7-125.9 -28.8 1.3 -21.4 11.4 10 10 A E > + 0 0 139 1,-0.1 4,-1.4 3,-0.1 -2,-0.1 0.838 35.8 144.8 35.3 46.4 2.7 -18.4 13.2 11 11 A D H > + 0 0 64 2,-0.2 4,-3.0 1,-0.2 5,-0.4 0.922 55.0 67.7 -76.4 -46.9 -0.2 -16.4 11.6 12 12 A R H 4 S+ 0 0 218 1,-0.3 4,-0.4 2,-0.2 -1,-0.2 0.855 109.8 38.8 -39.7 -45.3 -0.8 -14.1 14.6 13 13 A A H >4 S+ 0 0 59 2,-0.2 3,-0.9 1,-0.1 -1,-0.3 0.912 112.4 56.1 -74.2 -44.8 2.6 -12.6 13.8 14 14 A L H >< S+ 0 0 61 -4,-1.4 3,-1.5 1,-0.3 57,-0.4 0.935 106.3 49.8 -52.5 -52.0 2.2 -12.7 10.0 15 15 A R T 3< S+ 0 0 149 -4,-3.0 54,-0.4 1,-0.3 -1,-0.3 0.727 102.6 65.0 -60.7 -20.9 -1.0 -10.7 10.2 16 16 A S T < S+ 0 0 86 -3,-0.9 2,-0.5 -4,-0.4 -1,-0.3 0.034 75.7 129.6 -91.1 26.8 0.9 -8.2 12.3 17 17 A F < - 0 0 39 -3,-1.5 52,-1.2 52,-0.3 2,-0.5 -0.720 41.0-163.8 -87.3 126.5 3.2 -7.4 9.4 18 18 A K E -A 68 0A 132 -2,-0.5 2,-0.3 50,-0.2 50,-0.2 -0.946 3.5-166.4-115.1 123.8 3.6 -3.7 8.7 19 19 A L E -A 67 0A 28 48,-2.8 48,-1.8 -2,-0.5 2,-0.5 -0.789 7.4-151.3-108.2 151.2 5.0 -2.5 5.3 20 20 A S E -A 66 0A 68 -2,-0.3 2,-0.6 46,-0.2 46,-0.2 -0.966 4.9-160.4-126.7 117.1 6.3 1.0 4.4 21 21 A V E -A 65 0A 4 44,-2.1 44,-1.7 -2,-0.5 2,-0.9 -0.852 12.9-142.7 -99.8 119.9 6.1 2.3 0.9 22 22 A T E +A 64 0A 102 -2,-0.6 2,-0.3 42,-0.2 42,-0.2 -0.705 44.1 137.5 -84.2 106.0 8.4 5.2 0.1 23 23 A V - 0 0 9 40,-3.2 5,-0.1 -2,-0.9 -2,-0.1 -0.959 58.4 -95.4-153.3 131.1 6.6 7.6 -2.3 24 24 A D >> - 0 0 89 -2,-0.3 3,-0.9 1,-0.2 4,-0.8 -0.010 34.1-120.8 -42.3 144.0 6.3 11.4 -2.5 25 25 A P T 34 S+ 0 0 50 0, 0.0 -1,-0.2 0, 0.0 38,-0.1 0.468 105.5 76.7 -69.8 -0.2 3.1 12.7 -0.7 26 26 A K T 34 S+ 0 0 114 1,-0.2 4,-0.1 2,-0.2 -2,-0.1 0.887 98.6 38.5 -77.4 -41.5 2.1 14.1 -4.1 27 27 A Y T X> S+ 0 0 31 -3,-0.9 4,-2.7 1,-0.2 3,-1.4 0.690 98.2 83.4 -81.5 -20.0 1.0 10.8 -5.6 28 28 A H H 3X S+ 0 0 9 -4,-0.8 4,-1.6 1,-0.3 3,-0.4 0.943 96.5 39.3 -46.0 -60.1 -0.5 9.8 -2.2 29 29 A P H 34 S+ 0 0 63 0, 0.0 4,-0.4 0, 0.0 -1,-0.3 0.542 115.8 57.1 -69.8 -6.0 -3.8 11.7 -2.9 30 30 A K H <4 S+ 0 0 135 -3,-1.4 -2,-0.2 2,-0.1 -3,-0.1 0.798 102.9 50.1 -93.3 -35.7 -3.5 10.5 -6.5 31 31 A I H < S+ 0 0 6 -4,-2.7 8,-0.2 -3,-0.4 -3,-0.1 0.929 99.3 65.0 -68.7 -46.7 -3.4 6.8 -5.8 32 32 A I S < S- 0 0 56 -4,-1.6 7,-1.6 -5,-0.2 8,-0.3 0.871 103.1-140.2 -42.8 -45.6 -6.5 6.8 -3.6 33 33 A G - 0 0 21 -4,-0.4 -1,-0.2 1,-0.2 -2,-0.1 -0.619 32.5 -46.7 112.7-173.5 -8.6 7.9 -6.6 34 34 A R S S- 0 0 247 -2,-0.2 -1,-0.2 -3,-0.1 -2,-0.1 0.979 134.6 -5.2 -60.7 -59.7 -11.4 10.3 -7.2 35 35 A K S S- 0 0 179 -3,-0.2 -2,-0.1 0, 0.0 -1,-0.1 0.738 115.8 -83.3-105.4 -35.6 -13.5 9.2 -4.2 36 36 A G S S+ 0 0 11 -4,-0.1 4,-0.4 -5,-0.1 -3,-0.2 0.553 93.0 113.2 134.6 31.7 -11.5 6.3 -2.9 37 37 A A > + 0 0 51 2,-0.2 4,-3.0 3,-0.1 5,-0.2 0.900 69.2 59.8 -91.4 -53.5 -12.4 3.2 -4.9 38 38 A V H > S+ 0 0 74 1,-0.3 4,-1.8 2,-0.2 -5,-0.2 0.898 111.3 42.8 -40.0 -56.7 -9.2 2.5 -6.8 39 39 A I H > S+ 0 0 8 -7,-1.6 4,-2.2 -8,-0.2 -1,-0.3 0.878 112.6 55.0 -60.3 -39.1 -7.3 2.0 -3.6 40 40 A T H > S+ 0 0 55 -4,-0.4 4,-2.4 -8,-0.3 5,-0.3 0.932 104.9 52.5 -60.4 -48.1 -10.2 0.1 -2.1 41 41 A Q H X S+ 0 0 91 -4,-3.0 4,-3.1 1,-0.2 -2,-0.2 0.957 109.7 47.5 -52.6 -58.2 -10.2 -2.4 -5.0 42 42 A I H X S+ 0 0 14 -4,-1.8 4,-2.1 2,-0.2 5,-0.4 0.934 109.7 53.8 -49.3 -54.5 -6.5 -3.2 -4.6 43 43 A R H >X>S+ 0 0 76 -4,-2.2 5,-2.4 1,-0.2 4,-1.7 0.936 114.1 40.3 -46.1 -59.3 -6.8 -3.7 -0.8 44 44 A L H 3<5S+ 0 0 120 -4,-2.4 -1,-0.2 3,-0.2 -2,-0.2 0.884 107.7 64.4 -59.3 -40.1 -9.7 -6.2 -1.2 45 45 A E H 3<5S+ 0 0 129 -4,-3.1 -1,-0.2 -5,-0.3 -2,-0.2 0.890 121.0 21.8 -50.6 -43.8 -7.9 -7.8 -4.2 46 46 A H H <<5S- 0 0 47 -4,-2.1 -1,-0.3 -3,-0.5 -2,-0.2 0.489 108.7-122.1-102.0 -7.6 -5.0 -8.8 -1.8 47 47 A D T <5 + 0 0 119 -4,-1.7 23,-0.3 -5,-0.4 -3,-0.2 0.913 68.6 127.5 66.6 43.8 -7.1 -8.6 1.3 48 48 A V < - 0 0 15 -5,-2.4 2,-0.5 -6,-0.2 -1,-0.2 -0.673 59.4-115.8-122.7 177.9 -4.8 -6.0 2.9 49 49 A N E -B 68 0A 66 19,-2.1 19,-2.0 -2,-0.2 2,-0.6 -0.961 22.8-170.9-123.4 116.9 -5.1 -2.6 4.6 50 50 A I E +B 67 0A 8 -2,-0.5 2,-0.5 17,-0.2 17,-0.2 -0.917 8.2 176.6-110.8 114.4 -3.5 0.4 3.0 51 51 A Q E -B 66 0A 127 15,-2.7 15,-1.6 -2,-0.6 -2,-0.0 -0.968 15.7-148.9-120.8 126.2 -3.5 3.6 5.1 52 52 A F - 0 0 34 -2,-0.5 13,-0.1 13,-0.2 10,-0.1 -0.607 26.1-102.6 -92.1 151.8 -1.8 6.8 4.0 53 53 A P - 0 0 24 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 -0.288 32.6-114.6 -69.7 155.3 -0.2 9.4 6.4 54 54 A D >> - 0 0 90 1,-0.2 4,-1.1 7,-0.0 3,-0.5 -0.830 11.5-152.4 -97.3 122.7 -1.9 12.7 7.3 55 55 A K T 34 S+ 0 0 150 -2,-0.6 -1,-0.2 1,-0.2 3,-0.1 0.915 96.3 61.1 -56.3 -45.9 -0.2 15.9 6.1 56 56 A D T 34 S+ 0 0 150 1,-0.2 -1,-0.2 2,-0.1 3,-0.2 0.874 97.5 61.4 -49.1 -41.9 -1.8 17.8 9.0 57 57 A D T <4 S+ 0 0 79 -3,-0.5 2,-1.6 1,-0.2 -1,-0.2 0.961 72.9 172.5 -50.2 -62.6 0.1 15.5 11.4 58 58 A G < + 0 0 41 -4,-1.1 -1,-0.2 2,-0.2 4,-0.1 -0.584 60.8 75.6 88.4 -78.0 3.5 16.5 10.1 59 59 A N S S+ 0 0 170 -2,-1.6 -1,-0.2 -3,-0.2 -2,-0.1 0.810 92.7 69.9 -35.1 -40.2 5.7 14.7 12.7 60 60 A Q S S- 0 0 101 -6,-0.2 2,-0.3 1,-0.1 -2,-0.2 -0.497 102.5 -94.8 -83.8 152.9 4.8 11.6 10.7 61 61 A P - 0 0 69 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.496 28.1-168.6 -69.7 126.8 6.1 10.9 7.2 62 62 A Q S S+ 0 0 30 -2,-0.3 -34,-0.1 1,-0.2 -7,-0.1 0.591 88.8 53.2 -90.0 -13.1 3.7 12.0 4.5 63 63 A D S S+ 0 0 56 -38,-0.1 -40,-3.2 -39,-0.1 2,-0.4 0.590 93.9 85.3 -95.0 -14.4 5.7 10.1 1.8 64 64 A Q E -A 22 0A 52 -42,-0.2 2,-0.5 -44,-0.0 -42,-0.2 -0.758 65.3-154.9 -93.2 132.7 5.6 6.8 3.7 65 65 A I E -A 21 0A 0 -44,-1.7 -44,-2.1 -2,-0.4 2,-0.4 -0.927 6.9-144.7-111.4 124.3 2.6 4.5 3.3 66 66 A T E +AB 20 51A 53 -15,-1.6 -15,-2.7 -2,-0.5 2,-0.4 -0.698 19.9 178.7 -88.5 134.8 1.6 2.0 6.0 67 67 A I E -AB 19 50A 0 -48,-1.8 -48,-2.8 -2,-0.4 2,-0.3 -0.968 8.4-163.6-141.0 122.3 0.2 -1.3 4.9 68 68 A T E +AB 18 49A 45 -19,-2.0 -19,-2.1 -2,-0.4 2,-0.3 -0.723 41.0 70.8-103.8 153.9 -0.9 -4.2 7.2 69 69 A G S S- 0 0 12 -52,-1.2 -52,-0.3 -54,-0.4 2,-0.2 -0.827 85.5 -10.9 137.2-176.0 -1.5 -7.8 6.3 70 70 A Y > - 0 0 94 -2,-0.3 4,-2.5 -23,-0.3 5,-0.4 -0.366 62.4-125.8 -58.6 120.5 0.3 -11.0 5.2 71 71 A E H > S+ 0 0 103 -57,-0.4 4,-1.4 1,-0.2 -1,-0.2 0.805 113.1 48.6 -34.7 -39.1 3.9 -10.1 4.3 72 72 A K H > S+ 0 0 154 2,-0.2 4,-1.8 3,-0.1 -1,-0.2 0.987 114.8 40.0 -68.5 -61.5 3.1 -11.8 1.0 73 73 A N H >> S+ 0 0 45 1,-0.2 4,-1.8 2,-0.2 3,-0.7 0.954 111.9 56.9 -52.5 -57.0 -0.2 -10.0 0.2 74 74 A T H >X S+ 0 0 0 -4,-2.5 4,-3.1 1,-0.3 3,-0.5 0.883 107.6 49.0 -41.6 -50.0 1.0 -6.7 1.5 75 75 A E H 3X S+ 0 0 84 -4,-1.4 4,-1.3 -5,-0.4 -1,-0.3 0.876 106.6 56.4 -60.3 -38.8 3.9 -6.8 -1.0 76 76 A A H << S+ 0 0 45 -4,-1.8 4,-0.3 -3,-0.7 -1,-0.2 0.813 114.6 39.2 -63.1 -30.6 1.5 -7.7 -3.8 77 77 A A H XX S+ 0 0 0 -4,-1.8 4,-1.2 -3,-0.5 3,-1.2 0.852 108.9 58.7 -86.7 -39.9 -0.4 -4.5 -3.0 78 78 A R H 3X S+ 0 0 90 -4,-3.1 4,-0.9 -5,-0.3 -2,-0.2 0.751 97.3 65.5 -61.3 -23.4 2.6 -2.3 -2.4 79 79 A D H 3X S+ 0 0 72 -4,-1.3 4,-2.7 -5,-0.2 -1,-0.3 0.832 98.5 52.9 -68.1 -32.9 3.7 -3.1 -5.9 80 80 A A H <> S+ 0 0 17 -3,-1.2 4,-2.1 -4,-0.3 5,-0.2 0.972 98.7 59.7 -66.8 -56.4 0.7 -1.4 -7.3 81 81 A I H X S+ 0 0 0 -4,-1.2 4,-1.5 1,-0.2 -1,-0.2 0.821 116.5 37.3 -41.0 -37.4 1.2 1.9 -5.5 82 82 A L H X S+ 0 0 49 -4,-0.9 4,-2.1 2,-0.2 -1,-0.2 0.921 105.3 64.3 -82.5 -49.6 4.5 2.1 -7.3 83 83 A R H X S+ 0 0 197 -4,-2.7 4,-0.6 1,-0.2 -2,-0.2 0.780 112.1 41.8 -44.6 -29.1 3.5 0.6 -10.6 84 84 A I H >X S+ 0 0 37 -4,-2.1 4,-2.0 2,-0.2 3,-2.0 0.959 103.7 58.7 -83.3 -65.4 1.3 3.7 -10.9 85 85 A V H 3X S+ 0 0 24 -4,-1.5 4,-2.4 1,-0.3 -2,-0.2 0.783 102.9 61.5 -34.1 -36.0 3.5 6.5 -9.6 86 86 A G H 3X S+ 0 0 52 -4,-2.1 4,-0.9 1,-0.2 -1,-0.3 0.932 108.2 38.6 -60.9 -48.1 5.8 5.4 -12.5 87 87 A E H < S+ 0 0 132 -4,-0.9 3,-1.6 -3,-0.4 -1,-0.3 0.878 91.6 109.6 -74.7 -39.7 5.5 10.8 -17.1 91 91 A M T 3< S+ 0 0 133 -4,-2.5 -3,-0.0 1,-0.3 -4,-0.0 -0.051 91.9 10.6 -39.5 130.6 1.8 11.7 -17.4 92 92 A S T 3 S+ 0 0 126 1,-0.2 -1,-0.3 3,-0.0 -2,-0.1 0.785 109.9 126.1 65.0 27.2 1.5 15.2 -18.8 93 93 A G S < S- 0 0 32 -3,-1.6 2,-1.0 1,-0.0 -1,-0.2 -0.694 75.2 -80.4-114.5 168.2 5.2 15.1 -19.6 94 94 A P - 0 0 141 0, 0.0 2,-0.7 0, 0.0 -3,-0.0 -0.527 48.6-169.6 -69.8 99.0 7.3 15.7 -22.7 95 95 A S - 0 0 97 -2,-1.0 2,-0.1 -5,-0.0 -3,-0.0 -0.829 6.7-152.7 -97.0 116.2 7.0 12.4 -24.6 96 96 A S 0 0 130 -2,-0.7 0, 0.0 1,-0.0 0, 0.0 -0.422 360.0 360.0 -83.5 160.6 9.5 12.0 -27.5 97 97 A G 0 0 124 -2,-0.1 -1,-0.0 0, 0.0 -2,-0.0 -0.989 360.0 360.0 134.2 360.0 8.9 9.9 -30.6