==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN, RNA BINDING PROTEIN 24-MAY-05 2CTM . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7160.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 58.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 30.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 2,-0.4 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 69.3 -33.7 -2.6 -3.5 2 2 A S - 0 0 73 2,-0.2 2,-0.5 1,-0.1 4,-0.0 -0.798 360.0 -98.0-102.4 141.8 -30.2 -2.9 -4.9 3 3 A S S S- 0 0 124 -2,-0.4 -1,-0.1 3,-0.1 2,-0.0 -0.382 86.2 -40.0 -58.5 108.3 -28.8 -6.0 -6.5 4 4 A G S S+ 0 0 64 -2,-0.5 -2,-0.2 2,-0.0 0, 0.0 -0.310 124.6 28.2 70.1-154.6 -26.9 -7.8 -3.8 5 5 A S - 0 0 104 1,-0.1 3,-0.1 -2,-0.0 4,-0.0 -0.019 60.3-172.8 -39.2 135.6 -24.8 -5.8 -1.3 6 6 A S + 0 0 101 2,-0.1 2,-0.2 1,-0.1 -1,-0.1 0.828 63.0 30.9-101.6 -49.0 -26.2 -2.3 -0.9 7 7 A G S S- 0 0 56 1,-0.2 -1,-0.1 0, 0.0 2,-0.0 -0.502 93.1 -82.0-106.5 177.3 -23.6 -0.5 1.2 8 8 A R + 0 0 192 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.2 -0.260 46.8 179.5 -74.3 164.7 -19.8 -0.8 1.6 9 9 A I - 0 0 95 1,-0.1 -1,-0.0 -4,-0.0 -4,-0.0 -0.937 36.0-129.1-155.5 175.3 -18.1 -3.4 3.8 10 10 A V - 0 0 73 -2,-0.3 58,-0.4 1,-0.2 2,-0.1 0.751 46.2-148.6-102.0 -34.6 -14.8 -4.7 5.0 11 11 A G - 0 0 41 56,-0.1 2,-0.3 5,-0.0 -1,-0.2 -0.444 30.9 -45.8 95.5-171.7 -15.2 -8.4 4.2 12 12 A E > - 0 0 133 -2,-0.1 4,-1.3 1,-0.1 55,-0.1 -0.759 42.2-125.3-102.3 147.8 -13.9 -11.5 6.0 13 13 A L T >4 S+ 0 0 142 -2,-0.3 3,-1.3 1,-0.2 54,-0.2 0.956 114.2 42.0 -51.5 -59.0 -10.3 -12.0 7.1 14 14 A E T 34 S+ 0 0 185 1,-0.3 -1,-0.2 -3,-0.1 53,-0.1 0.865 107.1 63.7 -57.7 -37.6 -9.8 -15.3 5.2 15 15 A Q T 34 S+ 0 0 129 2,-0.1 -1,-0.3 53,-0.0 -2,-0.2 0.806 85.6 97.7 -57.3 -29.9 -11.7 -13.7 2.2 16 16 A M << - 0 0 29 -4,-1.3 2,-0.4 -3,-1.3 52,-0.3 -0.198 66.7-146.1 -59.5 151.9 -8.8 -11.3 2.0 17 17 A V - 0 0 51 50,-2.6 2,-0.4 48,-0.0 55,-0.1 -0.984 7.1-131.2-127.9 134.0 -6.1 -12.0 -0.6 18 18 A S - 0 0 91 -2,-0.4 2,-0.3 48,-0.2 48,-0.2 -0.682 30.3-179.4 -85.2 130.1 -2.4 -11.2 -0.3 19 19 A E E -A 65 0A 54 46,-2.6 46,-2.1 -2,-0.4 2,-0.6 -0.862 24.6-126.9-127.0 161.5 -0.8 -9.5 -3.3 20 20 A D E -A 64 0A 121 -2,-0.3 44,-0.2 44,-0.2 -2,-0.0 -0.939 20.7-168.4-114.1 118.4 2.7 -8.2 -4.3 21 21 A V E -A 63 0A 0 42,-2.4 42,-2.0 -2,-0.6 2,-0.9 -0.915 23.1-128.2-110.2 122.2 3.1 -4.6 -5.4 22 22 A P E +A 62 0A 81 0, 0.0 2,-0.4 0, 0.0 40,-0.2 -0.532 39.4 169.6 -69.7 101.6 6.4 -3.5 -7.0 23 23 A L - 0 0 2 38,-1.9 2,-0.1 -2,-0.9 5,-0.1 -0.965 32.6-123.0-120.8 130.3 7.5 -0.5 -5.0 24 24 A D > - 0 0 47 -2,-0.4 3,-1.7 1,-0.1 4,-0.3 -0.411 15.1-131.4 -69.2 141.9 10.9 1.2 -5.2 25 25 A H T 3> S+ 0 0 124 1,-0.3 4,-0.5 2,-0.2 3,-0.3 0.649 106.1 68.8 -67.1 -14.0 12.9 1.5 -2.0 26 26 A R T 34 S+ 0 0 163 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.645 107.9 35.5 -78.5 -15.5 13.4 5.2 -2.9 27 27 A V T <> S+ 0 0 2 -3,-1.7 4,-1.1 2,-0.1 -1,-0.2 0.256 94.9 92.8-118.6 7.5 9.7 5.8 -2.3 28 28 A H H >> S+ 0 0 6 -3,-0.3 4,-2.9 -4,-0.3 3,-0.9 0.999 93.7 32.1 -64.1 -69.9 9.2 3.4 0.6 29 29 A A H 3X S+ 0 0 50 -4,-0.5 4,-3.2 1,-0.3 -1,-0.1 0.928 113.2 62.9 -53.9 -49.7 9.8 5.8 3.5 30 30 A R H 34 S+ 0 0 163 1,-0.2 -1,-0.3 -4,-0.2 -2,-0.2 0.838 114.1 35.6 -44.9 -38.0 8.4 8.7 1.6 31 31 A I H << S+ 0 0 3 -4,-1.1 -1,-0.2 -3,-0.9 -2,-0.2 0.898 112.0 57.7 -83.8 -45.9 5.1 6.8 1.6 32 32 A I H < S- 0 0 52 -4,-2.9 7,-1.1 1,-0.2 8,-0.3 0.859 96.1-159.2 -52.7 -38.1 5.4 5.2 5.0 33 33 A G < - 0 0 33 -4,-3.2 -1,-0.2 5,-0.2 -2,-0.1 -0.611 34.1 -54.6 93.5-154.0 5.7 8.6 6.5 34 34 A A S S+ 0 0 105 -2,-0.2 -1,-0.1 -3,-0.1 -2,-0.1 0.919 132.0 8.8 -91.1 -62.2 7.2 9.6 9.9 35 35 A R S S- 0 0 239 -3,-0.1 -2,-0.1 0, 0.0 -1,-0.1 0.038 121.7 -82.6-108.4 24.0 5.3 7.4 12.4 36 36 A G S S+ 0 0 12 -4,-0.2 -3,-0.2 -7,-0.1 4,-0.2 0.820 97.6 121.7 80.5 32.4 3.5 5.3 9.8 37 37 A K >> + 0 0 159 2,-0.2 4,-2.0 3,-0.1 3,-1.3 0.904 63.5 58.4 -90.0 -52.8 0.7 7.8 9.2 38 38 A A H 3> S+ 0 0 29 1,-0.3 4,-0.6 -6,-0.2 -5,-0.2 0.802 115.5 41.0 -47.3 -31.7 1.1 8.5 5.5 39 39 A I H 3> S+ 0 0 10 -7,-1.1 4,-1.7 2,-0.2 -1,-0.3 0.650 106.2 65.0 -91.2 -18.6 0.6 4.7 5.1 40 40 A R H <> S+ 0 0 137 -3,-1.3 4,-2.1 -8,-0.3 5,-0.2 0.889 100.9 49.2 -70.6 -40.6 -2.2 4.6 7.7 41 41 A K H X S+ 0 0 142 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.854 110.3 51.9 -67.1 -35.4 -4.5 6.8 5.7 42 42 A I H X S+ 0 0 2 -4,-0.6 4,-1.6 -5,-0.3 6,-0.3 0.900 109.1 49.7 -68.0 -42.0 -3.9 4.6 2.6 43 43 A M H X>S+ 0 0 26 -4,-1.7 5,-2.2 1,-0.2 4,-1.2 0.964 113.8 43.4 -61.3 -55.0 -4.7 1.4 4.4 44 44 A D H <5S+ 0 0 95 -4,-2.1 -1,-0.2 3,-0.2 -2,-0.2 0.841 105.6 66.8 -60.1 -34.1 -8.0 2.7 5.9 45 45 A E H <5S+ 0 0 97 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.946 122.3 15.0 -51.7 -55.5 -8.9 4.2 2.5 46 46 A F H <5S- 0 0 26 -4,-1.6 -1,-0.2 -3,-0.3 -2,-0.2 0.329 106.9-119.5-101.9 4.4 -9.2 0.8 0.9 47 47 A K T <5 + 0 0 95 -4,-1.2 21,-0.2 -5,-0.2 -3,-0.2 0.903 68.5 136.7 58.0 43.4 -9.4 -1.0 4.2 48 48 A V < - 0 0 4 -5,-2.2 2,-0.5 -6,-0.3 19,-0.2 -0.606 56.3-123.7-113.7 175.3 -6.2 -3.0 3.3 49 49 A D E -B 66 0A 93 17,-2.1 17,-2.3 -2,-0.2 2,-0.4 -0.862 21.7-161.0-126.1 97.1 -3.1 -4.1 5.2 50 50 A I E -B 65 0A 15 -2,-0.5 2,-0.6 15,-0.2 15,-0.3 -0.638 3.6-165.8 -80.2 126.5 0.2 -3.0 3.5 51 51 A R E -B 64 0A 165 13,-2.5 13,-2.5 -2,-0.4 3,-0.1 -0.890 8.5-152.4-117.7 101.5 3.2 -4.9 4.7 52 52 A F - 0 0 36 -2,-0.6 2,-0.3 11,-0.2 11,-0.2 -0.347 30.7 -95.4 -70.4 150.3 6.5 -3.3 3.7 53 53 A P - 0 0 28 0, 0.0 -1,-0.1 0, 0.0 10,-0.1 -0.495 40.4-132.4 -69.8 126.8 9.6 -5.5 3.2 54 54 A Q > - 0 0 136 -2,-0.3 3,-2.7 2,-0.1 5,-0.1 -0.221 30.2 -94.8 -74.0 167.8 11.8 -5.8 6.3 55 55 A S T 3 S+ 0 0 138 1,-0.3 -1,-0.1 3,-0.0 0, 0.0 0.917 130.4 42.3 -47.9 -51.4 15.6 -5.4 6.3 56 56 A G T 3 S+ 0 0 71 3,-0.0 -1,-0.3 4,-0.0 -2,-0.1 0.150 91.9 132.5 -84.4 21.2 16.1 -9.1 6.0 57 57 A A < - 0 0 17 -3,-2.7 -5,-0.0 1,-0.1 0, 0.0 -0.424 62.8-132.6 -74.4 147.7 13.2 -9.3 3.5 58 58 A P S S+ 0 0 121 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.765 101.7 35.8 -69.8 -26.2 13.7 -11.2 0.3 59 59 A D > + 0 0 89 3,-0.2 3,-1.8 -5,-0.1 -3,-0.0 -0.780 60.3 176.6-133.8 89.8 12.3 -8.3 -1.8 60 60 A P T 3 S+ 0 0 51 0, 0.0 -1,-0.1 0, 0.0 3,-0.0 0.473 88.3 51.6 -69.8 -0.6 13.3 -4.9 -0.4 61 61 A N T 3 S+ 0 0 88 -37,-0.1 -38,-1.9 -36,-0.1 2,-0.4 0.212 100.1 75.5-119.1 10.9 11.4 -3.4 -3.4 62 62 A C E < -A 22 0A 28 -3,-1.8 2,-0.4 -40,-0.2 -3,-0.2 -0.975 60.1-158.5-128.2 140.4 8.2 -5.3 -3.0 63 63 A V E -A 21 0A 0 -42,-2.0 -42,-2.4 -2,-0.4 2,-0.7 -0.962 14.4-136.4-121.4 134.0 5.3 -4.8 -0.5 64 64 A T E -AB 20 51A 69 -13,-2.5 -13,-2.5 -2,-0.4 2,-0.5 -0.782 22.6-168.3 -91.4 113.0 2.8 -7.4 0.6 65 65 A V E -AB 19 50A 0 -46,-2.1 -46,-2.6 -2,-0.7 2,-0.3 -0.870 2.8-158.4-105.0 131.5 -0.7 -6.0 0.7 66 66 A T E + B 0 49A 49 -17,-2.3 -17,-2.1 -2,-0.5 2,-0.2 -0.711 39.3 76.9-106.0 157.6 -3.6 -7.9 2.3 67 67 A G S S- 0 0 0 -2,-0.3 -50,-2.6 -19,-0.2 -19,-0.1 -0.589 80.7 -28.2 130.7 167.0 -7.4 -7.5 1.8 68 68 A L > - 0 0 9 -58,-0.4 4,-2.9 -52,-0.3 5,-0.2 -0.004 57.3-118.4 -46.6 153.5 -10.2 -8.3 -0.6 69 69 A P H > S+ 0 0 68 0, 0.0 4,-0.8 0, 0.0 -1,-0.1 0.695 115.3 51.3 -69.7 -19.5 -9.2 -8.6 -4.3 70 70 A E H > S+ 0 0 107 2,-0.1 4,-0.6 3,-0.1 -2,-0.1 0.777 116.2 38.4 -87.5 -30.5 -11.5 -5.7 -5.2 71 71 A N H > S+ 0 0 12 2,-0.2 4,-2.0 3,-0.1 5,-0.1 0.865 114.1 53.5 -86.4 -41.7 -10.0 -3.4 -2.5 72 72 A V H X S+ 0 0 0 -4,-2.9 4,-2.4 1,-0.2 3,-0.2 0.956 103.4 56.1 -57.8 -54.2 -6.4 -4.4 -2.9 73 73 A E H X S+ 0 0 101 -4,-0.8 4,-1.7 1,-0.3 -1,-0.2 0.888 109.2 48.0 -45.0 -47.5 -6.3 -3.8 -6.7 74 74 A E H X S+ 0 0 100 -4,-0.6 4,-1.4 1,-0.2 -1,-0.3 0.906 108.2 54.8 -62.2 -43.1 -7.5 -0.2 -6.0 75 75 A A H X S+ 0 0 0 -4,-2.0 4,-1.7 1,-0.2 3,-0.3 0.913 105.0 54.1 -57.1 -45.6 -4.8 0.3 -3.3 76 76 A I H >X S+ 0 0 33 -4,-2.4 4,-2.3 1,-0.2 3,-1.1 0.963 103.6 53.2 -53.6 -59.0 -2.1 -0.7 -5.7 77 77 A D H 3X S+ 0 0 119 -4,-1.7 4,-1.1 1,-0.3 -1,-0.2 0.831 111.2 49.4 -46.3 -36.2 -3.0 1.8 -8.4 78 78 A H H 3X S+ 0 0 40 -4,-1.4 4,-1.3 -3,-0.3 -1,-0.3 0.820 109.7 52.0 -74.3 -32.1 -2.8 4.4 -5.6 79 79 A I H XX S+ 0 0 4 -4,-1.7 4,-1.7 -3,-1.1 3,-0.7 0.975 109.6 45.4 -68.1 -57.1 0.6 3.1 -4.5 80 80 A L H 3X S+ 0 0 69 -4,-2.3 4,-1.9 1,-0.2 5,-0.2 0.828 106.6 63.9 -56.1 -32.8 2.3 3.2 -7.9 81 81 A N H 3X S+ 0 0 84 -4,-1.1 4,-1.6 -5,-0.4 -1,-0.2 0.919 105.6 42.4 -58.0 -46.1 0.8 6.7 -8.3 82 82 A L H < S+ 0 0 91 -4,-2.5 3,-2.6 1,-0.2 -1,-0.2 0.965 111.0 54.9 -62.0 -54.8 8.0 11.0 -5.6 87 87 A L H 3< S+ 0 0 40 -4,-3.0 3,-0.4 1,-0.3 -2,-0.2 0.896 91.9 73.0 -45.3 -48.7 10.6 9.6 -7.9 88 88 A A T 3< S+ 0 0 84 -4,-3.0 2,-0.8 1,-0.3 -1,-0.3 0.787 96.1 55.0 -37.2 -34.3 10.3 12.7 -10.1 89 89 A D S < S+ 0 0 146 -3,-2.6 2,-0.4 -4,-0.5 -1,-0.3 -0.560 76.7 122.9-104.0 67.0 12.1 14.4 -7.3 90 90 A S + 0 0 70 -2,-0.8 -3,-0.0 -3,-0.4 -1,-0.0 -0.823 30.3 165.5-131.4 93.7 15.2 12.2 -7.1 91 91 A G - 0 0 64 -2,-0.4 2,-1.1 1,-0.0 -2,-0.0 -0.848 45.0-105.0-112.4 146.9 18.5 14.0 -7.5 92 92 A P - 0 0 134 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 -0.522 42.0-145.4 -69.7 97.2 22.1 12.8 -6.8 93 93 A S - 0 0 97 -2,-1.1 -3,-0.0 1,-0.1 0, 0.0 -0.129 22.2-108.4 -59.9 159.6 23.0 14.6 -3.6 94 94 A S 0 0 141 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.930 360.0 360.0 -55.9 -49.0 26.6 15.8 -3.0 95 95 A G 0 0 107 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.197 360.0 360.0-158.8 360.0 27.1 13.1 -0.3