==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 13-JUN-05 2CVR . COMPND 2 MOLECULE: DNA-BINDING PROTEIN 7A; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; . AUTHOR I.AROSIO,T.RECCA,R.CONSONNI,E.ALBERTI,P.FUSI,L.ZETTA . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6032.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 43.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 22.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 90 0, 0.0 15,-0.6 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 105.2 0.7 2.3 8.1 2 2 A T E -A 15 0A 88 13,-0.1 2,-0.5 14,-0.1 13,-0.1 -0.868 360.0-136.4-129.5 164.2 -2.4 1.0 6.3 3 3 A V E -A 14 0A 31 11,-1.0 11,-1.5 -2,-0.3 2,-0.2 -0.982 18.0-136.2-124.8 125.0 -4.5 2.3 3.4 4 4 A K E +A 13 0A 180 -2,-0.5 9,-0.2 9,-0.2 7,-0.0 -0.512 28.5 167.3 -78.1 147.6 -8.3 2.2 3.6 5 5 A F - 0 0 65 7,-2.1 2,-0.4 -2,-0.2 -1,-0.1 -0.421 10.3-174.1-160.9 76.8 -10.1 1.1 0.5 6 6 A K - 0 0 153 5,-0.2 5,-0.2 1,-0.2 3,-0.0 -0.609 6.8-166.3 -77.8 128.0 -13.8 0.3 0.9 7 7 A Y - 0 0 161 3,-1.3 -1,-0.2 -2,-0.4 4,-0.1 0.976 67.9 -47.4 -77.2 -57.3 -15.2 -1.2 -2.2 8 8 A K S S- 0 0 148 2,-0.4 -2,-0.0 0, 0.0 0, 0.0 0.131 117.4 -14.4-136.6 -98.3 -18.9 -0.8 -1.4 9 9 A G S S+ 0 0 77 1,-0.1 2,-0.5 2,-0.1 -3,-0.0 0.127 118.5 79.7-103.0 20.1 -20.3 -1.8 2.0 10 10 A E S S- 0 0 143 2,-0.0 -3,-1.3 0, 0.0 -2,-0.4 -0.942 74.6-140.5-130.2 111.0 -17.3 -3.9 3.0 11 11 A E - 0 0 154 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.468 25.0-177.0 -70.6 138.7 -14.3 -2.0 4.4 12 12 A L - 0 0 78 -2,-0.2 -7,-2.1 2,-0.0 2,-0.4 -0.966 11.9-156.7-135.2 152.7 -11.0 -3.5 3.2 13 13 A Q E -A 4 0A 114 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.978 2.3-161.2-130.9 144.2 -7.4 -2.6 4.0 14 14 A V E -A 3 0A 17 -11,-1.5 -11,-1.0 -2,-0.4 2,-0.2 -0.982 17.5-131.2-126.7 135.4 -4.2 -3.2 2.0 15 15 A D E > -A 2 0A 57 -2,-0.4 4,-0.7 -13,-0.1 -13,-0.1 -0.584 8.6-142.4 -84.8 146.4 -0.7 -3.2 3.3 16 16 A I T 4 S+ 0 0 53 -15,-0.6 3,-0.2 -2,-0.2 -1,-0.1 0.832 99.7 50.0 -78.3 -29.6 1.9 -1.2 1.4 17 17 A S T 4 S+ 0 0 108 1,-0.2 -1,-0.2 -3,-0.0 -2,-0.0 0.759 106.9 54.4 -82.1 -21.5 4.7 -3.7 2.0 18 18 A K T 4 S+ 0 0 128 1,-0.1 2,-1.5 2,-0.1 16,-0.7 0.677 83.3 93.0 -85.4 -15.8 2.7 -6.7 0.9 19 19 A I E < +B 33 0B 33 -4,-0.7 14,-0.2 1,-0.2 -1,-0.1 -0.615 46.4 157.9 -78.5 96.3 1.8 -5.1 -2.5 20 20 A K E + 0 0 168 -2,-1.5 2,-0.4 12,-0.6 -1,-0.2 0.940 54.0 66.1 -85.1 -54.7 4.6 -6.5 -4.5 21 21 A K E +B 32 0B 138 11,-0.7 11,-2.0 -3,-0.3 2,-0.3 -0.518 66.6 148.7 -71.2 125.7 3.2 -6.2 -8.0 22 22 A V E +B 31 0B 62 -2,-0.4 2,-0.3 9,-0.2 9,-0.2 -0.934 14.4 164.9-160.2 132.3 2.9 -2.5 -8.9 23 23 A W E -B 30 0B 110 7,-1.1 7,-0.7 -2,-0.3 2,-0.5 -0.954 32.3-126.2-153.1 130.7 3.1 -0.6 -12.1 24 24 A R + 0 0 140 -2,-0.3 2,-0.3 5,-0.2 5,-0.1 -0.621 44.0 146.8 -81.7 128.0 1.9 2.9 -13.0 25 25 A V - 0 0 80 -2,-0.5 5,-0.3 3,-0.3 -2,-0.1 -0.922 54.2 -15.1-160.4 131.4 -0.3 3.1 -16.0 26 26 A G S S- 0 0 65 -2,-0.3 -1,-0.1 1,-0.2 4,-0.0 -0.251 102.5 -56.5 70.4-164.3 -3.2 5.4 -16.8 27 27 A K S S+ 0 0 138 1,-0.1 2,-0.5 -3,-0.1 20,-0.2 0.944 124.0 64.8 -80.0 -50.3 -4.8 7.5 -14.1 28 28 A M S S- 0 0 93 18,-0.2 2,-0.7 1,-0.1 -3,-0.3 -0.597 86.3-132.5 -77.5 124.4 -5.7 4.7 -11.7 29 29 A I E - C 0 45B 30 16,-2.2 16,-0.8 -2,-0.5 -5,-0.2 -0.635 23.1-146.8 -78.1 116.8 -2.6 3.0 -10.4 30 30 A S E +BC 23 44B 37 -2,-0.7 -7,-1.1 -7,-0.7 2,-0.3 -0.436 24.7 168.2 -80.2 158.6 -3.2 -0.7 -10.8 31 31 A F E -BC 22 43B 17 12,-1.3 12,-1.3 -9,-0.2 2,-0.5 -0.984 34.6-129.7-161.7 167.6 -1.7 -3.1 -8.3 32 32 A T E -B 21 0B 13 -11,-2.0 -11,-0.7 -2,-0.3 -12,-0.6 -0.823 21.9-162.3-129.1 92.7 -1.8 -6.7 -7.1 33 33 A Y E -B 19 0B 70 -2,-0.5 8,-0.6 -14,-0.2 2,-0.6 -0.589 21.0-128.7 -76.5 129.0 -2.2 -7.0 -3.4 34 34 A D + 0 0 79 -16,-0.7 -1,-0.1 -2,-0.4 2,-0.1 -0.641 49.8 141.1 -80.2 123.0 -1.2 -10.5 -2.2 35 35 A E + 0 0 135 -2,-0.6 6,-0.1 6,-0.1 -1,-0.1 -0.455 60.8 32.6-162.3 81.0 -3.9 -12.0 -0.1 36 36 A G S S- 0 0 54 3,-0.1 -2,-0.1 4,-0.1 0, 0.0 0.077 89.9-115.0 161.2 -33.5 -4.6 -15.7 -0.5 37 37 A G S S+ 0 0 73 1,-0.1 -3,-0.0 0, 0.0 0, 0.0 0.840 107.8 14.2 78.5 30.7 -1.4 -17.4 -1.3 38 38 A G S S+ 0 0 67 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.045 119.2 61.7 161.3 -36.5 -2.6 -18.4 -4.8 39 39 A K S S- 0 0 188 0, 0.0 -3,-0.1 0, 0.0 -5,-0.0 0.949 75.2-168.6 -78.4 -49.3 -5.7 -16.4 -5.6 40 40 A T - 0 0 53 -8,-0.0 -6,-0.2 2,-0.0 -4,-0.1 0.945 16.0-132.5 59.2 96.8 -4.0 -13.0 -5.4 41 41 A G - 0 0 19 -8,-0.6 2,-0.3 -6,-0.1 -6,-0.1 -0.126 22.2-160.9 -70.0 175.0 -6.6 -10.3 -5.4 42 42 A R + 0 0 173 -10,-0.2 2,-0.2 -8,-0.1 -10,-0.2 -0.978 22.6 133.9-159.4 144.0 -6.4 -7.3 -7.7 43 43 A G E -C 31 0B 33 -12,-1.3 -12,-1.3 -2,-0.3 2,-0.3 -0.748 32.6-122.2-160.9-150.1 -7.8 -3.8 -7.9 44 44 A A E -C 30 0B 30 -2,-0.2 2,-0.3 -14,-0.2 -14,-0.2 -0.973 6.4-150.2-162.8 175.2 -6.9 -0.2 -8.5 45 45 A V E -C 29 0B 65 -16,-0.8 -16,-2.2 -2,-0.3 5,-0.1 -0.939 22.2-119.9-159.8 132.7 -7.0 3.2 -7.0 46 46 A S - 0 0 45 -2,-0.3 3,-0.4 -18,-0.3 -18,-0.2 -0.274 22.0-125.8 -70.2 164.0 -7.2 6.7 -8.5 47 47 A E S S+ 0 0 108 1,-0.2 3,-0.3 -20,-0.2 -1,-0.1 -0.127 78.1 110.1-102.6 37.2 -4.4 9.2 -7.9 48 48 A K S S- 0 0 197 1,-0.2 -1,-0.2 0, 0.0 -20,-0.0 0.836 101.2 -2.5 -79.4 -30.6 -6.7 11.9 -6.6 49 49 A D S S+ 0 0 143 -3,-0.4 -1,-0.2 2,-0.0 3,-0.1 -0.408 77.3 173.3-159.4 74.2 -5.3 11.5 -3.0 50 50 A A - 0 0 28 -3,-0.3 -3,-0.1 1,-0.1 5,-0.0 -0.446 46.5 -84.8 -78.4 162.1 -2.8 8.8 -2.6 51 51 A P > - 0 0 47 0, 0.0 4,-1.0 0, 0.0 -1,-0.1 -0.097 31.6-121.5 -61.8 166.9 -1.1 8.5 0.9 52 52 A K H > S+ 0 0 171 1,-0.2 4,-1.1 2,-0.2 5,-0.1 0.792 111.1 51.0 -81.6 -25.8 2.0 10.6 1.6 53 53 A E H > S+ 0 0 133 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.757 105.1 56.6 -82.6 -22.8 4.2 7.6 2.3 54 54 A L H > S+ 0 0 47 2,-0.2 4,-1.9 1,-0.2 5,-0.5 0.860 107.4 47.7 -77.3 -32.5 3.2 5.9 -0.9 55 55 A L H X S+ 0 0 77 -4,-1.0 4,-1.2 1,-0.2 -1,-0.2 0.855 115.1 45.1 -77.1 -31.6 4.3 8.7 -3.1 56 56 A Q H < S+ 0 0 145 -4,-1.1 -1,-0.2 2,-0.2 -2,-0.2 0.800 111.6 53.9 -80.8 -27.0 7.6 9.1 -1.3 57 57 A M H < S+ 0 0 123 -4,-1.5 3,-0.3 -5,-0.1 -2,-0.2 0.977 122.4 25.1 -71.3 -53.7 8.3 5.4 -1.3 58 58 A L H < S+ 0 0 86 -4,-1.9 2,-1.9 1,-0.3 -3,-0.2 0.970 124.1 51.9 -75.8 -52.3 7.9 4.8 -5.0 59 59 A E S < S- 0 0 73 -4,-1.2 2,-1.6 -5,-0.5 -1,-0.3 -0.548 72.8-179.3 -85.7 80.5 8.8 8.3 -6.1 60 60 A K + 0 0 171 -2,-1.9 -4,-0.1 -3,-0.3 -3,-0.1 -0.607 13.6 159.5 -81.8 92.3 12.0 8.7 -4.3 61 61 A Q 0 0 170 -2,-1.6 -1,-0.2 -5,-0.1 -5,-0.0 0.975 360.0 360.0 -77.6 -59.5 12.9 12.2 -5.4 62 62 A K 0 0 260 -3,-0.2 -2,-0.0 -6,-0.0 -6,-0.0 0.001 360.0 360.0-162.2 360.0 15.4 13.1 -2.6