==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 26-AUG-99 1CWW . COMPND 2 MOLECULE: APOPTOTIC PROTEASE ACTIVATING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.L.DAY,C.DUPONT,M.LACKMANN,D.L.VAUX,M.G.HINDS . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6322.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 72.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A G 0 0 113 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 115.2 7.4 -19.7 -7.7 2 -4 A P - 0 0 119 0, 0.0 2,-0.3 0, 0.0 3,-0.3 -0.458 360.0-173.0 -65.5 120.4 6.0 -16.1 -7.5 3 -3 A L + 0 0 158 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.887 61.4 20.2-117.7 147.5 3.7 -15.5 -10.4 4 -2 A G S S+ 0 0 55 -2,-0.3 66,-1.5 1,-0.1 67,-0.6 0.797 84.0 165.7 69.3 28.8 2.1 -12.2 -11.5 5 -1 A S B -A 69 0A 50 -3,-0.3 2,-0.3 64,-0.2 64,-0.2 -0.119 50.7 -67.0 -69.4 172.7 4.7 -10.2 -9.5 6 1 A M - 0 0 27 62,-0.6 -1,-0.2 1,-0.1 2,-0.1 -0.476 57.9-119.6 -67.2 124.5 5.2 -6.5 -10.0 7 2 A D > - 0 0 71 -2,-0.3 4,-3.8 1,-0.1 5,-0.3 -0.391 8.7-135.4 -67.5 139.5 6.6 -5.9 -13.5 8 3 A A H > S+ 0 0 63 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.925 108.0 47.2 -61.2 -47.0 10.0 -4.2 -13.7 9 4 A K H > S+ 0 0 106 2,-0.2 4,-2.2 3,-0.2 86,-0.3 0.887 118.2 44.4 -62.7 -37.6 8.8 -1.8 -16.5 10 5 A A H > S+ 0 0 0 85,-0.4 4,-1.4 2,-0.2 85,-0.2 0.984 115.1 44.2 -68.7 -61.4 5.7 -1.1 -14.4 11 6 A R H X S+ 0 0 91 -4,-3.8 4,-2.3 1,-0.2 5,-0.2 0.822 116.5 50.1 -54.7 -33.7 7.3 -0.7 -11.0 12 7 A N H X>S+ 0 0 72 -4,-2.4 4,-3.8 -5,-0.3 5,-0.6 0.950 101.8 57.4 -73.1 -49.4 10.0 1.4 -12.6 13 8 A C H <5S+ 0 0 8 -4,-2.2 4,-0.4 -5,-0.2 -1,-0.2 0.805 113.7 45.6 -52.0 -26.3 7.7 3.8 -14.5 14 9 A L H <5S+ 0 0 0 -4,-1.4 -2,-0.2 78,-0.2 -1,-0.2 0.956 124.4 27.2 -79.9 -58.2 6.4 4.5 -11.0 15 10 A L H ><5S+ 0 0 32 -4,-2.3 3,-0.6 1,-0.2 -2,-0.2 0.863 116.1 60.9 -75.2 -37.9 9.5 4.9 -9.0 16 11 A Q T 3<5S+ 0 0 116 -4,-3.8 2,-1.1 1,-0.3 3,-0.4 0.842 92.0 68.6 -59.3 -32.6 11.7 6.1 -11.9 17 12 A H T >>< + 0 0 44 -5,-0.6 3,-2.6 -4,-0.4 4,-1.7 -0.111 58.5 138.3 -82.1 43.8 9.4 9.1 -12.3 18 13 A R T <4 + 0 0 174 -2,-1.1 4,-0.4 -3,-0.6 5,-0.3 0.565 52.0 86.7 -64.5 -5.4 10.8 10.2 -9.0 19 14 A E T 34 S+ 0 0 129 -3,-0.4 -1,-0.3 1,-0.2 -2,-0.1 0.843 116.3 6.2 -61.9 -33.2 10.7 13.5 -10.8 20 15 A A T <>>S+ 0 0 26 -3,-2.6 4,-3.1 3,-0.1 5,-0.7 0.386 111.0 96.7-128.6 -4.9 7.1 13.6 -9.5 21 16 A L H >X5S+ 0 0 23 -4,-1.7 4,-3.3 2,-0.2 3,-0.6 0.970 97.0 26.7 -49.3 -80.1 7.1 10.5 -7.2 22 17 A E H 345S+ 0 0 154 -4,-0.4 -1,-0.2 1,-0.2 -3,-0.1 0.772 123.2 58.6 -55.8 -29.0 7.7 12.1 -3.8 23 18 A K H 345S+ 0 0 146 -5,-0.3 -1,-0.2 1,-0.1 -2,-0.2 0.861 125.9 9.4 -72.8 -40.4 6.2 15.3 -5.2 24 19 A D H <<5S+ 0 0 45 -4,-3.1 2,-0.9 -3,-0.6 -2,-0.2 0.595 95.1 106.2-119.2 -14.5 2.7 14.0 -6.1 25 20 A I << - 0 0 1 -4,-3.3 2,-0.1 -5,-0.7 37,-0.1 -0.542 55.4-169.1 -70.5 104.6 2.5 10.5 -4.7 26 21 A K - 0 0 57 -2,-0.9 -2,-0.1 1,-0.1 57,-0.0 -0.447 23.3-161.3 -92.8 166.9 0.2 11.0 -1.7 27 22 A T > + 0 0 4 -2,-0.1 4,-0.6 3,-0.1 5,-0.1 0.472 69.6 78.0-123.5 -12.3 -0.6 8.5 1.1 28 23 A S H > S+ 0 0 77 2,-0.1 4,-1.3 3,-0.1 3,-0.3 0.960 112.5 4.4 -64.8 -92.6 -3.8 9.8 2.6 29 24 A Y H > S+ 0 0 138 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.787 125.8 66.8 -67.2 -28.6 -6.9 8.9 0.4 30 25 A I H > S+ 0 0 0 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.925 106.5 40.8 -59.5 -42.7 -4.7 6.9 -1.9 31 26 A M H X S+ 0 0 20 -4,-0.6 4,-2.3 -3,-0.3 5,-0.3 0.814 109.6 61.0 -74.3 -29.7 -4.0 4.4 0.9 32 27 A D H X S+ 0 0 91 -4,-1.3 4,-2.2 1,-0.2 -2,-0.2 0.921 106.7 45.2 -62.4 -42.0 -7.7 4.7 1.9 33 28 A H H X S+ 0 0 41 -4,-2.4 4,-0.8 1,-0.2 -1,-0.2 0.763 112.5 52.6 -71.4 -26.5 -8.7 3.4 -1.4 34 29 A M H X>S+ 0 0 0 -4,-1.0 6,-1.7 -5,-0.2 5,-1.7 0.837 111.8 43.9 -78.9 -34.0 -6.1 0.7 -1.3 35 30 A I H <5S+ 0 0 39 -4,-2.3 3,-0.5 2,-0.2 -2,-0.2 0.892 115.2 47.9 -77.3 -39.1 -7.1 -0.6 2.1 36 31 A S H <5S+ 0 0 89 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.796 106.7 59.2 -69.0 -26.5 -10.8 -0.5 1.2 37 32 A D H <5S- 0 0 72 -4,-0.8 -1,-0.3 -5,-0.2 -2,-0.2 0.775 114.7-124.7 -71.3 -24.9 -9.8 -2.3 -2.0 38 33 A G T <5S+ 0 0 58 -4,-0.6 -3,-0.2 -3,-0.5 -2,-0.1 0.465 86.7 103.8 94.7 3.0 -8.5 -5.0 0.3 39 34 A F S - 0 0 83 -2,-0.7 4,-3.1 1,-0.1 5,-0.2 -0.210 34.7 -94.8 -80.2 177.2 -4.0 -5.1 5.1 42 37 A I H > S+ 0 0 130 1,-0.2 4,-2.6 2,-0.2 5,-0.1 0.871 130.4 52.2 -61.2 -34.9 -4.3 -3.8 8.7 43 38 A S H > S+ 0 0 72 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.929 110.0 47.8 -66.0 -43.5 -0.6 -4.5 9.0 44 39 A E H > S+ 0 0 15 1,-0.2 4,-1.9 2,-0.2 5,-0.3 0.948 113.4 47.8 -59.6 -50.0 0.0 -2.5 5.8 45 40 A E H X S+ 0 0 59 -4,-3.1 4,-2.6 1,-0.2 5,-0.2 0.891 109.5 55.0 -56.4 -44.7 -2.2 0.3 7.1 46 41 A E H X S+ 0 0 100 -4,-2.6 4,-2.3 -5,-0.2 -1,-0.2 0.933 107.3 47.5 -57.0 -53.1 -0.3 0.3 10.4 47 42 A K H X S+ 0 0 67 -4,-2.3 4,-1.4 2,-0.2 -2,-0.2 0.955 116.0 42.6 -55.5 -56.7 3.2 0.7 8.9 48 43 A V H < S+ 0 0 0 -4,-1.9 3,-0.3 1,-0.2 -1,-0.2 0.911 120.2 43.4 -57.3 -45.8 2.2 3.6 6.7 49 44 A R H < S+ 0 0 161 -4,-2.6 -1,-0.2 -5,-0.3 -2,-0.2 0.749 101.7 69.5 -73.8 -23.5 0.1 5.3 9.4 50 45 A N H < S+ 0 0 99 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.897 83.8 85.7 -60.8 -39.0 2.8 4.5 12.0 51 46 A E S < S- 0 0 49 -4,-1.4 3,-0.0 -3,-0.3 0, 0.0 -0.283 80.8-136.1 -63.4 144.7 5.0 7.1 10.3 52 47 A P S S+ 0 0 89 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.869 72.3 12.0 -75.0 -42.0 4.3 10.7 11.5 53 48 A T S > S- 0 0 75 1,-0.0 4,-2.5 0, 0.0 3,-0.3 -0.789 90.4 -83.6-132.3 178.3 4.3 12.8 8.3 54 49 A Q H >>S+ 0 0 85 -2,-0.2 4,-1.2 3,-0.2 5,-0.9 0.718 114.7 82.1 -53.5 -19.7 4.1 12.5 4.5 55 50 A Q H >5S+ 0 0 131 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.964 115.8 2.0 -47.8 -80.8 7.9 12.0 5.0 56 51 A Q H >5S+ 0 0 91 -3,-0.3 4,-1.4 3,-0.2 -1,-0.2 0.592 130.5 67.6 -87.7 -11.3 8.0 8.4 5.9 57 52 A R H X5S+ 0 0 77 -4,-2.5 4,-2.0 2,-0.2 -3,-0.2 0.988 110.9 30.1 -71.0 -59.5 4.2 8.1 5.5 58 53 A A H X5S+ 0 0 5 -4,-1.2 4,-2.6 1,-0.2 5,-0.3 0.914 121.1 55.0 -64.4 -41.0 4.1 8.6 1.7 59 54 A A H X< S+ 0 0 10 -4,-2.0 3,-2.0 -3,-0.3 -1,-0.2 0.946 105.5 53.7 -68.3 -47.2 5.3 -1.1 0.2 65 60 A I H >< S+ 0 0 0 -4,-1.7 3,-1.3 1,-0.3 -1,-0.2 0.779 91.4 78.0 -57.2 -26.6 4.9 -1.0 -3.5 66 61 A L T 3< S+ 0 0 61 -4,-1.1 -1,-0.3 1,-0.3 -2,-0.2 0.804 113.8 16.7 -53.2 -32.2 8.7 -1.6 -3.7 67 62 A K T < S+ 0 0 162 -3,-2.0 -1,-0.3 -4,-0.4 -2,-0.2 -0.195 104.5 94.7-140.3 50.5 8.0 -5.3 -3.0 68 63 A K S < S- 0 0 48 -3,-1.3 -62,-0.6 1,-0.1 2,-0.3 0.231 70.7 -96.1-107.6-128.5 4.3 -6.0 -3.6 69 64 A D B > -A 5 0A 62 -64,-0.2 4,-2.6 1,-0.1 -64,-0.2 -0.910 30.3 -91.3-150.4 175.8 2.9 -7.4 -6.9 70 65 A N H > S+ 0 0 37 -66,-1.5 4,-3.0 -2,-0.3 5,-0.3 0.921 123.5 53.4 -56.4 -47.1 1.2 -6.4 -10.2 71 66 A D H > S+ 0 0 110 -67,-0.6 4,-1.5 1,-0.2 -1,-0.2 0.923 113.5 41.2 -54.8 -50.1 -2.2 -6.8 -8.6 72 67 A S H > S+ 0 0 16 2,-0.2 4,-3.5 1,-0.2 -1,-0.2 0.830 113.3 55.1 -68.6 -33.3 -1.3 -4.4 -5.8 73 68 A Y H X S+ 0 0 0 -4,-2.6 4,-3.0 2,-0.2 -2,-0.2 0.925 107.4 47.5 -67.9 -42.9 0.5 -2.1 -8.1 74 69 A V H X S+ 0 0 29 -4,-3.0 4,-2.9 2,-0.2 -1,-0.2 0.844 113.8 51.0 -66.4 -28.0 -2.6 -1.8 -10.4 75 70 A S H X S+ 0 0 6 -4,-1.5 4,-2.6 -5,-0.3 -2,-0.2 0.968 111.0 44.9 -70.8 -51.8 -4.5 -1.2 -7.1 76 71 A F H X S+ 0 0 0 -4,-3.5 4,-1.3 1,-0.2 -2,-0.2 0.897 115.3 51.7 -56.1 -37.6 -2.0 1.5 -6.1 77 72 A Y H >X S+ 0 0 22 -4,-3.0 4,-1.4 1,-0.2 3,-0.5 0.942 109.3 47.3 -61.0 -51.9 -2.3 2.8 -9.7 78 73 A N H 3X S+ 0 0 58 -4,-2.9 4,-1.1 1,-0.2 -2,-0.2 0.831 106.4 59.3 -61.1 -34.1 -6.1 2.8 -9.5 79 74 A A H 3X S+ 0 0 0 -4,-2.6 4,-1.0 1,-0.2 -1,-0.2 0.855 100.2 56.3 -65.0 -33.1 -5.9 4.7 -6.1 80 75 A L H X<>S+ 0 0 1 -4,-1.3 5,-3.2 -3,-0.5 3,-0.7 0.915 106.6 49.3 -64.3 -40.4 -4.0 7.4 -7.9 81 76 A L H ><5S+ 0 0 76 -4,-1.4 3,-0.8 1,-0.2 -1,-0.2 0.758 105.0 60.7 -68.4 -23.7 -7.0 7.7 -10.3 82 77 A H H 3<5S+ 0 0 92 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.746 109.4 40.8 -74.8 -25.2 -9.2 7.9 -7.2 83 78 A E T <<5S- 0 0 65 -4,-1.0 -1,-0.2 -3,-0.7 -2,-0.2 -0.111 121.6 -98.1-116.7 38.0 -7.4 11.0 -5.9 84 79 A G T < 5S+ 0 0 69 -3,-0.8 2,-0.4 1,-0.1 3,-0.3 0.674 86.1 128.3 58.1 21.0 -7.1 12.9 -9.2 85 80 A Y >< + 0 0 42 -5,-3.2 4,-1.8 -6,-0.2 -4,-0.2 -0.343 19.0 135.1-101.9 50.9 -3.5 11.7 -9.7 86 81 A K H > + 0 0 154 -2,-0.4 4,-2.2 1,-0.2 -1,-0.2 0.785 63.9 60.7 -67.2 -31.3 -4.1 10.5 -13.2 87 82 A D H > S+ 0 0 121 -3,-0.3 4,-1.9 2,-0.2 -1,-0.2 0.951 107.3 41.8 -64.7 -50.8 -0.9 12.1 -14.6 88 83 A L H > S+ 0 0 2 1,-0.2 4,-0.7 2,-0.2 -2,-0.2 0.951 116.6 49.7 -61.4 -47.8 1.5 10.1 -12.3 89 84 A A H >X S+ 0 0 0 -4,-1.8 4,-1.2 1,-0.2 3,-0.9 0.862 107.1 54.9 -59.0 -36.4 -0.5 6.9 -12.9 90 85 A A H 3X S+ 0 0 54 -4,-2.2 4,-0.6 1,-0.3 3,-0.4 0.898 102.0 57.6 -64.7 -36.4 -0.4 7.6 -16.6 91 86 A L H 3< S+ 0 0 51 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.723 113.5 40.1 -62.3 -22.4 3.3 7.7 -16.3 92 87 A L H XX S+ 0 0 0 -3,-0.9 3,-1.6 -4,-0.7 4,-1.2 0.562 90.6 88.2-100.8 -16.8 3.0 4.2 -14.9 93 88 A H H 3< S+ 0 0 64 -4,-1.2 5,-0.2 -3,-0.4 -2,-0.2 0.736 75.7 72.4 -55.9 -23.5 0.3 3.0 -17.3 94 89 A D T 3< S+ 0 0 104 -4,-0.6 -1,-0.3 1,-0.2 -84,-0.2 0.902 105.5 35.9 -59.3 -41.1 3.2 2.0 -19.6 95 90 A G T <4 S+ 0 0 9 -3,-1.6 -85,-0.4 -86,-0.3 -1,-0.2 0.716 100.1 89.5 -84.8 -22.7 3.9 -0.9 -17.2 96 91 A I < - 0 0 6 -4,-1.2 -26,-0.0 -86,-0.2 -1,-0.0 -0.676 63.7-159.3 -80.1 113.3 0.3 -1.5 -16.4 97 92 A P + 0 0 97 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.101 65.0 78.0 -80.8 24.3 -1.1 -4.1 -19.0 98 93 A V - 0 0 43 -5,-0.2 2,-0.3 2,-0.0 -2,-0.1 -0.931 64.1-148.6-132.9 158.7 -4.7 -3.1 -18.4 99 94 A V S S- 0 0 116 -2,-0.3 2,-2.2 3,-0.0 3,-0.2 -0.663 72.8 -71.8-125.0 70.0 -7.0 -0.3 -19.4 100 95 A S - 0 0 85 -2,-0.3 -22,-0.0 1,-0.2 -2,-0.0 -0.488 55.3-163.9 77.4 -70.7 -9.3 -0.1 -16.3 101 96 A S 0 0 101 -2,-2.2 -1,-0.2 1,-0.2 -3,-0.0 0.731 360.0 360.0 62.7 23.0 -11.1 -3.4 -17.1 102 97 A S 0 0 166 -3,-0.2 -1,-0.2 0, 0.0 -3,-0.0 -0.290 360.0 360.0-118.0 360.0 -13.8 -2.3 -14.7