==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 31-AUG-99 1CY5 . COMPND 2 MOLECULE: PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.E.VAUGHN,L.JOSHUA-TOR . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5183.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 56 0, 0.0 63,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 160.0 -5.9 2.0 19.5 2 2 A D > - 0 0 74 1,-0.1 4,-2.5 88,-0.1 3,-0.4 -0.149 360.0-117.4 -50.8 146.3 -7.0 2.9 23.0 3 3 A A H > S+ 0 0 53 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.867 113.0 60.3 -58.6 -33.4 -7.9 6.5 23.6 4 4 A K H > S+ 0 0 118 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.927 109.1 41.6 -61.9 -42.9 -5.1 6.9 26.1 5 5 A A H > S+ 0 0 0 -3,-0.4 4,-2.1 2,-0.2 -2,-0.2 0.940 115.7 49.1 -70.4 -46.7 -2.5 5.9 23.5 6 6 A R H X S+ 0 0 93 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.931 110.4 50.8 -58.6 -45.6 -4.0 8.0 20.7 7 7 A N H X S+ 0 0 80 -4,-3.4 4,-2.4 1,-0.2 -1,-0.2 0.837 107.9 54.6 -63.2 -31.2 -4.3 11.1 23.0 8 8 A C H X S+ 0 0 12 -4,-1.3 4,-1.4 -5,-0.3 -1,-0.2 0.942 107.4 48.0 -68.2 -46.1 -0.6 10.6 23.9 9 9 A L H < S+ 0 0 0 -4,-2.1 4,-0.3 2,-0.2 3,-0.2 0.913 113.4 49.4 -54.9 -46.0 0.5 10.7 20.2 10 10 A L H >< S+ 0 0 76 -4,-2.3 3,-1.1 1,-0.2 4,-0.3 0.909 107.9 53.6 -63.1 -42.4 -1.7 13.8 19.7 11 11 A Q H 3< S+ 0 0 150 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.860 121.4 30.7 -56.5 -35.4 -0.2 15.5 22.7 12 12 A H T 3X S+ 0 0 35 -4,-1.4 4,-2.4 -3,-0.2 -1,-0.2 0.207 85.3 117.2-113.7 13.9 3.3 15.0 21.5 13 13 A R H <> S+ 0 0 84 -3,-1.1 4,-2.5 -4,-0.3 5,-0.3 0.884 72.9 50.2 -56.7 -48.6 2.7 15.1 17.8 14 14 A E H > S+ 0 0 140 -4,-0.3 4,-1.9 1,-0.2 -1,-0.2 0.910 112.7 45.5 -63.0 -42.6 4.7 18.1 16.9 15 15 A A H > S+ 0 0 36 -3,-0.2 4,-1.8 2,-0.2 5,-0.3 0.931 111.8 52.6 -65.0 -43.9 7.8 17.0 18.7 16 16 A L H X S+ 0 0 0 -4,-2.4 4,-2.0 1,-0.2 3,-0.2 0.944 114.5 41.8 -55.9 -47.7 7.6 13.5 17.3 17 17 A E H < S+ 0 0 23 -4,-2.5 -1,-0.2 1,-0.2 36,-0.2 0.813 111.8 56.1 -72.3 -30.3 7.3 14.8 13.7 18 18 A K H < S+ 0 0 125 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.900 119.6 27.8 -62.1 -40.9 10.0 17.5 14.3 19 19 A D H < S+ 0 0 63 -4,-1.8 2,-0.3 -3,-0.2 -2,-0.2 0.716 91.0 101.4-104.4 -34.7 12.7 15.0 15.3 20 20 A I < - 0 0 1 -4,-2.0 2,-0.5 -5,-0.3 33,-0.2 -0.388 47.3-158.7 -74.9 124.0 12.1 11.5 13.8 21 21 A K > - 0 0 132 -2,-0.3 4,-0.6 1,-0.1 3,-0.1 -0.892 18.1-152.6 -84.5 131.4 14.1 10.2 10.8 22 22 A T H > + 0 0 6 -2,-0.5 4,-2.6 1,-0.2 5,-0.2 0.749 69.0 79.8 -84.9 -24.0 11.8 7.5 9.5 23 23 A S H > S+ 0 0 42 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.898 100.3 33.7 -63.2 -48.6 14.0 4.9 7.8 24 24 A Y H > S+ 0 0 164 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.900 117.6 54.3 -73.4 -41.2 15.4 2.9 10.6 25 25 A I H X S+ 0 0 0 -4,-0.6 4,-2.1 1,-0.2 -2,-0.2 0.932 109.9 48.8 -54.6 -46.1 12.3 3.2 12.7 26 26 A M H X S+ 0 0 5 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.911 108.9 50.3 -67.8 -40.1 10.2 1.8 9.8 27 27 A D H X S+ 0 0 86 -4,-1.9 4,-2.6 -5,-0.2 -1,-0.2 0.870 109.3 54.4 -65.9 -32.3 12.5 -1.2 9.2 28 28 A H H X S+ 0 0 32 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.935 110.6 44.6 -61.5 -47.2 12.2 -2.0 12.9 29 29 A M H X>S+ 0 0 0 -4,-2.1 5,-2.4 2,-0.2 4,-1.6 0.873 112.8 51.1 -69.3 -35.3 8.5 -2.0 12.7 30 30 A I H <5S+ 0 0 43 -4,-2.6 -2,-0.2 3,-0.2 -1,-0.2 0.928 110.4 48.9 -65.5 -44.2 8.4 -4.0 9.5 31 31 A S H <5S+ 0 0 106 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.889 111.9 50.0 -60.2 -39.4 10.8 -6.6 11.0 32 32 A D H <5S- 0 0 65 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.780 117.4-117.6 -64.9 -32.7 8.4 -6.7 14.1 33 33 A G T <5S+ 0 0 56 -4,-1.6 -3,-0.2 2,-0.2 -2,-0.1 0.545 85.8 102.0 108.1 13.6 5.5 -7.1 11.8 34 34 A F S - 0 0 74 -2,-0.3 4,-2.3 1,-0.1 5,-0.1 -0.516 19.3-119.7 -91.1 161.3 3.6 -3.0 5.9 37 37 A I H > S+ 0 0 121 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.805 116.2 55.5 -65.4 -26.3 6.0 -2.4 3.0 38 38 A S H > S+ 0 0 92 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.895 107.9 47.7 -71.6 -36.8 3.3 -0.6 1.2 39 39 A E H > S+ 0 0 50 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.922 110.8 53.0 -64.1 -42.9 2.9 1.8 4.1 40 40 A E H X S+ 0 0 45 -4,-2.3 4,-3.1 1,-0.2 -2,-0.2 0.906 106.8 51.0 -58.6 -46.6 6.6 2.2 4.2 41 41 A E H X S+ 0 0 118 -4,-2.0 4,-1.8 2,-0.2 -1,-0.2 0.892 106.0 55.5 -63.1 -36.8 6.8 3.2 0.6 42 42 A K H < S+ 0 0 111 -4,-1.7 4,-0.5 2,-0.2 3,-0.2 0.952 112.8 42.5 -59.9 -46.0 4.1 5.8 1.0 43 43 A V H >< S+ 0 0 0 -4,-2.0 3,-1.7 1,-0.2 -2,-0.2 0.945 111.5 54.6 -61.4 -49.2 6.2 7.4 3.8 44 44 A R H 3< S+ 0 0 159 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.766 99.1 64.3 -58.2 -28.6 9.4 7.0 1.8 45 45 A N T 3< S+ 0 0 116 -4,-1.8 -1,-0.3 -3,-0.2 -2,-0.2 0.667 76.7 103.7 -73.4 -18.1 7.8 8.9 -1.2 46 46 A E S < S- 0 0 49 -3,-1.7 6,-0.1 -4,-0.5 7,-0.0 -0.445 73.0-133.4 -69.3 144.0 7.4 12.2 0.7 47 47 A P S S+ 0 0 91 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.154 77.0 42.8 -96.1 15.8 10.1 14.7 -0.3 48 48 A T S > S- 0 0 66 1,-0.1 4,-2.7 0, 0.0 5,-0.2 -0.986 78.9-116.3-150.5 162.0 11.3 16.0 3.1 49 49 A Q H > S+ 0 0 75 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.910 116.7 47.1 -62.2 -45.5 12.2 14.6 6.5 50 50 A Q H > S+ 0 0 89 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.878 112.7 50.3 -60.4 -39.6 9.4 16.4 8.3 51 51 A Q H > S+ 0 0 81 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.884 110.0 50.1 -71.8 -33.2 6.9 15.3 5.6 52 52 A R H X S+ 0 0 59 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.948 113.1 45.9 -65.1 -43.5 8.0 11.7 5.9 53 53 A A H X S+ 0 0 2 -4,-2.4 4,-2.6 1,-0.2 5,-0.3 0.908 110.7 53.6 -65.7 -39.2 7.6 11.8 9.7 54 54 A A H X S+ 0 0 26 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.918 109.3 49.0 -59.4 -41.4 4.3 13.5 9.4 55 55 A M H X S+ 0 0 26 -4,-2.0 4,-2.4 1,-0.2 -2,-0.2 0.940 110.6 50.3 -65.7 -42.4 3.1 10.7 7.1 56 56 A L H X S+ 0 0 1 -4,-2.4 4,-2.9 2,-0.2 -2,-0.2 0.936 112.0 45.9 -59.6 -46.6 4.4 8.0 9.5 57 57 A I H X S+ 0 0 1 -4,-2.6 4,-2.6 1,-0.2 -1,-0.2 0.911 109.4 56.2 -66.3 -39.4 2.6 9.5 12.5 58 58 A K H X S+ 0 0 102 -4,-2.4 4,-0.5 -5,-0.3 -1,-0.2 0.939 111.6 44.2 -54.5 -44.7 -0.5 10.0 10.4 59 59 A M H >< S+ 0 0 15 -4,-2.4 3,-1.6 -5,-0.2 -2,-0.2 0.952 110.8 51.9 -66.3 -45.9 -0.4 6.3 9.6 60 60 A I H >< S+ 0 0 0 -4,-2.9 3,-2.4 1,-0.3 -1,-0.2 0.900 99.2 65.1 -60.5 -37.9 0.4 5.2 13.2 61 61 A L H 3< S+ 0 0 31 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.735 102.7 50.0 -57.2 -20.4 -2.6 7.2 14.5 62 62 A K T << S+ 0 0 149 -3,-1.6 -1,-0.3 -4,-0.5 -2,-0.2 0.383 98.6 88.3 -99.2 3.2 -4.9 4.8 12.6 63 63 A K S < S- 0 0 34 -3,-2.4 2,-0.1 -4,-0.2 -3,-0.1 -0.167 76.4 -94.6 -97.1-173.2 -3.3 1.6 13.8 64 64 A D > - 0 0 67 -63,-0.1 4,-1.8 1,-0.1 3,-0.4 -0.296 40.3 -91.1 -99.0-177.3 -4.0 -0.6 16.8 65 65 A N H > S+ 0 0 45 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.877 123.5 56.8 -58.2 -39.8 -2.5 -1.0 20.2 66 66 A D H > S+ 0 0 67 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.847 106.7 50.3 -67.4 -31.7 0.1 -3.5 19.1 67 67 A S H > S+ 0 0 6 -3,-0.4 4,-2.6 2,-0.2 -1,-0.2 0.857 105.6 55.1 -73.0 -37.9 1.3 -1.0 16.5 68 68 A Y H X S+ 0 0 0 -4,-1.8 4,-2.9 1,-0.2 -2,-0.2 0.941 110.0 47.5 -57.5 -46.5 1.7 1.7 19.1 69 69 A V H X S+ 0 0 49 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.903 110.7 51.5 -64.9 -38.4 3.9 -0.6 21.1 70 70 A S H X S+ 0 0 2 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.910 111.3 47.7 -63.5 -42.7 5.9 -1.5 18.1 71 71 A F H X S+ 0 0 0 -4,-2.6 4,-2.3 2,-0.2 -2,-0.2 0.935 112.3 49.9 -59.6 -48.2 6.4 2.2 17.3 72 72 A Y H X S+ 0 0 29 -4,-2.9 4,-2.3 1,-0.2 -2,-0.2 0.921 111.5 48.0 -55.5 -46.7 7.4 2.8 20.9 73 73 A N H X S+ 0 0 52 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.882 109.1 54.1 -66.3 -35.2 9.9 -0.1 20.9 74 74 A A H X S+ 0 0 0 -4,-2.2 4,-2.3 2,-0.2 6,-0.2 0.916 107.9 49.9 -65.6 -40.5 11.4 1.2 17.6 75 75 A L H <>S+ 0 0 0 -4,-2.3 5,-2.8 1,-0.2 4,-0.3 0.926 112.1 48.5 -61.0 -44.2 11.9 4.6 19.2 76 76 A L H <5S+ 0 0 47 -4,-2.3 3,-0.4 1,-0.2 5,-0.2 0.882 119.4 37.8 -59.4 -39.9 13.6 3.0 22.1 77 77 A H H <5S+ 0 0 129 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.695 114.3 51.8 -91.1 -20.8 15.8 0.8 19.9 78 78 A E T <5S- 0 0 74 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.1 0.098 124.1 -78.0-117.1 22.9 16.6 3.3 17.1 79 79 A G T 5S+ 0 0 60 -3,-0.4 -3,-0.2 -4,-0.3 3,-0.2 0.686 101.3 101.2 105.8 19.8 17.9 6.3 18.9 80 80 A Y >< + 0 0 40 -5,-2.8 4,-2.6 -6,-0.2 5,-0.2 -0.299 25.1 140.1-130.7 50.1 14.8 8.1 20.2 81 81 A K H > S+ 0 0 136 1,-0.2 4,-2.0 -5,-0.2 -1,-0.1 0.812 74.5 60.4 -61.6 -28.4 14.7 7.2 23.9 82 82 A D H > S+ 0 0 94 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.919 108.5 42.1 -60.8 -46.4 13.7 10.8 24.6 83 83 A L H > S+ 0 0 3 1,-0.2 4,-1.3 2,-0.2 3,-0.5 0.890 110.3 56.4 -72.4 -38.1 10.6 10.4 22.5 84 84 A A H X S+ 0 0 0 -4,-2.6 4,-1.5 1,-0.2 3,-0.5 0.910 101.7 58.9 -56.6 -38.2 9.9 7.0 23.9 85 85 A A H < S+ 0 0 68 -4,-2.0 4,-0.5 1,-0.3 -1,-0.2 0.875 103.3 51.7 -62.8 -31.6 9.8 8.5 27.4 86 86 A L H < S+ 0 0 66 -4,-1.0 -1,-0.3 -3,-0.5 -2,-0.2 0.861 114.5 42.4 -68.7 -34.0 7.0 10.9 26.3 87 87 A L H >< S+ 0 0 0 -4,-1.3 3,-1.4 -3,-0.5 4,-0.4 0.539 89.2 91.3 -90.3 -10.8 4.9 7.9 25.0 88 88 A H G >< S+ 0 0 96 -4,-1.5 3,-2.1 1,-0.3 -1,-0.2 0.926 83.7 51.1 -53.6 -49.8 5.5 5.5 27.9 89 89 A D G 3 S+ 0 0 130 -4,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.706 105.7 59.4 -69.0 -12.9 2.6 6.5 30.0 90 90 A G G < S+ 0 0 1 -3,-1.4 -1,-0.3 -4,-0.1 -2,-0.2 0.438 71.5 132.4 -88.8 -1.6 0.3 6.1 26.9 91 91 A I < 0 0 54 -3,-2.1 -26,-0.0 -4,-0.4 -3,-0.0 -0.327 360.0 360.0 -59.3 129.9 1.2 2.4 26.4 92 92 A P 0 0 53 0, 0.0 -1,-0.2 0, 0.0 -88,-0.1 0.769 360.0 360.0 -50.4 360.0 -2.1 0.6 26.0