==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 01-AUG-76 1CYC . COMPND 2 MOLECULE: FERROCYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: KATSUWONUS PELAMIS; . AUTHOR N.TANAKA,T.YAMANE,T.TSUKIHARA,T.ASHIDA,M.KAKUDO . 206 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 12741.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 112 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 20 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 28.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 20 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 93 0, 0.0 4,-1.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -96.5 -19.9 14.6 -8.0 2 2 A D H > + 0 0 96 1,-0.2 4,-1.9 2,-0.2 95,-0.1 0.960 360.0 64.3 -95.9 -9.9 -17.6 15.1 -5.2 3 3 A V H > S+ 0 0 44 2,-0.2 4,-1.7 3,-0.2 5,-0.4 0.977 96.7 65.9 -57.2 -48.2 -19.8 13.0 -2.9 4 4 A A H > S+ 0 0 62 1,-0.2 4,-1.7 2,-0.2 3,-0.4 0.869 102.0 45.3 -40.0 -67.4 -18.7 10.1 -5.6 5 5 A K H X>S+ 0 0 71 -4,-1.1 4,-2.8 1,-0.2 5,-0.5 0.922 105.2 60.5 -47.6 -34.3 -15.2 10.5 -4.4 6 6 A G H X5S+ 0 0 0 -4,-1.9 4,-4.2 1,-0.3 -1,-0.2 0.978 108.7 46.4 -56.0 -57.0 -16.4 10.4 -0.4 7 7 A K H X>S+ 0 0 129 -4,-1.7 4,-4.5 -3,-0.4 5,-0.5 0.968 109.3 54.3 -69.9 -43.4 -17.8 6.8 -1.0 8 8 A K H X5S+ 0 0 134 -4,-1.7 4,-1.8 -5,-0.4 -1,-0.2 0.996 118.5 35.1 -39.7 -52.7 -14.5 5.9 -2.9 9 9 A T H X>S+ 0 0 9 -4,-2.8 4,-2.2 2,-0.2 5,-1.4 0.760 115.3 58.8 -73.0 -36.8 -12.6 7.0 0.2 10 10 A F H XXS+ 0 0 30 -4,-4.2 5,-1.1 -5,-0.5 4,-0.7 0.960 107.7 42.1 -62.4 -50.3 -15.5 5.6 2.1 11 11 A V H <>S+ 0 0 80 -4,-4.5 5,-0.8 1,-0.2 -2,-0.2 0.860 118.3 53.0 -67.7 -26.9 -15.0 2.1 0.6 12 12 A Q H <<S+ 0 0 107 1,-0.4 5,-0.8 4,-0.1 4,-0.2 0.621 81.7 16.7-113.1 -73.5 -15.8 6.9 29.2 50 50 A D T 5S+ 0 0 105 3,-0.2 -1,-0.4 4,-0.1 3,-0.1 -0.333 101.7 70.5-100.9 146.8 -14.1 9.8 28.2 51 51 A A T 5S+ 0 0 8 -2,-0.2 2,-2.5 1,-0.2 3,-0.3 -0.095 104.9 18.9 103.1 124.7 -13.7 9.9 24.4 52 52 A N T 5S+ 0 0 23 1,-0.4 4,-0.4 23,-0.2 -12,-0.2 -0.501 146.7 23.7 85.2 -83.4 -16.5 10.6 22.3 53 53 A K T > 5S+ 0 0 107 -2,-2.5 3,-4.1 -4,-0.2 -1,-0.4 0.789 100.6 81.0 -53.8-108.1 -18.2 11.9 25.3 54 54 A S T 3 - 0 0 87 1,-0.2 4,-1.0 -23,-0.1 3,-0.3 -0.929 68.2 -85.1-132.9-178.8 -22.4 19.1 13.0 61 61 A E H > S+ 0 0 70 -2,-0.3 4,-0.9 1,-0.3 -1,-0.2 0.949 127.7 36.3 -56.3 -77.7 -21.1 20.3 9.4 62 62 A N H > S+ 0 0 119 2,-0.1 4,-2.0 1,-0.1 -1,-0.3 0.395 107.5 57.0 -23.0 -95.1 -17.7 21.6 11.4 63 63 A T H >>S+ 0 0 17 -3,-0.3 4,-3.8 2,-0.2 5,-0.6 0.585 101.3 58.9 -27.9 -27.9 -17.0 19.3 14.1 64 64 A L H X5S+ 0 0 6 -4,-1.0 4,-1.0 2,-0.2 5,-0.3 0.949 110.7 43.6 -75.3 -40.0 -16.9 16.4 11.4 65 65 A M H X5S+ 0 0 49 -4,-0.9 4,-2.8 3,-0.2 -1,-0.2 0.913 110.0 59.2 -55.8 -47.5 -14.0 18.5 9.8 66 66 A E H X5S+ 0 0 108 -4,-2.0 4,-0.7 2,-0.2 -2,-0.2 0.926 120.6 23.6 -43.7 -56.8 -13.1 18.8 13.5 67 67 A Y H <5S+ 0 0 34 -4,-3.8 -3,-0.2 2,-0.2 -1,-0.2 0.848 111.6 65.7 -78.5 -50.8 -12.8 15.0 13.5 68 68 A L H < S- 0 0 4 1,-0.2 3,-1.0 2,-0.1 -23,-0.2 0.916 99.3-156.5 61.6 30.5 -11.9 14.1 21.6 76 76 A P T 3 S+ 0 0 90 0, 0.0 -1,-0.2 0, 0.0 -4,-0.2 -0.159 72.3 46.1 -56.4 117.6 -8.2 13.0 21.6 77 77 A G T 3 S+ 0 0 61 -6,-0.8 -2,-0.1 1,-0.2 -5,-0.1 0.293 71.9 161.5 117.7 15.7 -8.3 9.2 22.9 78 78 A T < - 0 0 19 -3,-1.0 -1,-0.2 -7,-0.4 -27,-0.1 -0.033 45.7-131.4 -64.5 139.2 -11.3 7.8 20.6 79 79 A K S S+ 0 0 123 2,-0.1 2,-0.9 0, 0.0 -1,-0.2 0.509 76.3 110.6 -75.3 8.4 -11.1 4.1 20.6 80 80 A M S S- 0 0 75 1,-0.1 2,-1.6 -9,-0.1 -3,-0.1 -0.574 72.7-129.8 -89.1 121.3 -11.4 4.1 16.6 81 81 A I + 0 0 138 -2,-0.9 2,-0.7 1,-0.0 -1,-0.1 -0.285 47.3 153.6 -61.2 91.5 -8.2 3.1 15.1 82 82 A F - 0 0 51 -2,-1.6 -2,-0.1 1,-0.1 -10,-0.0 -0.837 35.8-162.7-128.3 142.4 -7.4 5.9 12.4 83 83 A A - 0 0 52 -2,-0.7 -11,-0.2 -13,-0.1 -1,-0.1 0.905 53.6 -66.6 -73.4 -84.4 -4.5 7.3 10.9 84 84 A G - 0 0 7 -14,-0.1 123,-0.1 122,-0.1 3,-0.0 0.469 22.4-168.1-136.3 -99.4 -5.3 10.7 9.3 85 85 A I + 0 0 6 1,-0.1 2,-0.1 -15,-0.1 122,-0.1 0.896 35.2 157.2 83.4 59.4 -7.2 12.5 6.7 86 86 A K + 0 0 48 1,-0.1 2,-0.5 5,-0.1 3,-0.1 -0.202 35.6 100.8-124.0 44.0 -5.3 15.7 7.2 87 87 A K S > S- 0 0 118 1,-0.2 4,-2.0 -2,-0.1 5,-0.5 -0.667 71.4-136.0-129.9 125.1 -5.9 17.2 3.8 88 88 A K H >>S+ 0 0 136 -2,-0.5 4,-2.4 3,-0.2 5,-0.8 0.858 106.6 54.2 -25.5 -72.8 -8.4 19.9 2.6 89 89 A G H >5S+ 0 0 17 3,-0.2 4,-2.2 1,-0.2 5,-0.2 0.958 122.7 24.6 -33.1 -78.7 -9.2 17.5 -0.8 90 90 A E H >5S+ 0 0 47 3,-0.2 4,-3.5 2,-0.2 5,-0.3 0.962 124.4 52.8 -65.6 -40.1 -10.1 14.1 1.1 91 91 A R H X5S+ 0 0 69 -4,-2.0 4,-1.8 2,-0.3 -3,-0.2 0.994 112.7 45.2 -77.3 -69.4 -11.2 15.9 4.5 92 92 A Q H X5S+ 0 0 106 -4,-2.4 4,-2.7 -5,-0.5 5,-0.4 0.999 116.0 52.1 -29.8 -72.1 -13.8 18.4 2.4 93 93 A D H XS+ 0 0 28 -4,-3.5 4,-3.0 -5,-0.4 5,-0.6 0.981 108.5 39.9 -44.4 -57.5 -19.6 11.9 1.9 98 98 A L H X>S+ 0 0 31 -4,-1.9 4,-1.0 1,-0.2 5,-0.9 0.981 112.9 54.8 -68.0 -62.7 -21.8 11.7 5.4 99 99 A K H <5S+ 0 0 123 -4,-1.6 4,-0.4 -5,-0.3 -1,-0.2 0.930 118.3 34.7 -50.8 -34.4 -24.3 14.6 4.4 100 100 A S H <5S+ 0 0 78 -4,-2.2 -2,-0.2 -3,-0.2 -3,-0.2 0.981 131.7 30.1 -76.6 -51.9 -25.3 12.6 0.9 101 101 A A H <5S+ 0 0 32 -4,-3.0 -3,-0.2 -5,-0.4 -2,-0.1 0.952 119.1 51.7 -80.3 -56.1 -25.0 8.8 2.2 102 102 A T T << 0 0 21 -4,-1.0 -3,-0.2 -5,-0.6 -1,-0.1 0.983 360.0 360.0 -55.7 -69.7 -26.1 9.3 6.1 103 103 A S < 0 0 129 -5,-0.9 -68,-0.0 -4,-0.4 -69,-0.0 -0.081 360.0 360.0 -70.9 360.0 -29.5 11.3 5.5 104 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 105 1 B G > 0 0 93 0, 0.0 4,-1.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -96.5 9.0 14.6 -8.0 106 2 B D H > + 0 0 96 1,-0.2 4,-1.9 2,-0.2 95,-0.1 0.960 360.0 64.3 -95.9 -9.9 11.2 15.1 -5.2 107 3 B V H > S+ 0 0 44 2,-0.2 4,-1.7 3,-0.2 5,-0.4 0.977 96.7 65.9 -57.2 -48.2 9.0 13.0 -2.9 108 4 B A H > S+ 0 0 62 1,-0.2 4,-1.7 2,-0.2 3,-0.4 0.869 102.0 45.3 -40.0 -67.4 10.2 10.1 -5.6 109 5 B K H X>S+ 0 0 71 -4,-1.1 4,-2.8 1,-0.2 5,-0.5 0.922 105.2 60.5 -47.6 -34.3 13.6 10.5 -4.4 110 6 B G H X5S+ 0 0 0 -4,-1.9 4,-4.2 1,-0.3 -1,-0.2 0.978 108.7 46.4 -56.0 -57.0 12.5 10.4 -0.4 111 7 B K H X>S+ 0 0 129 -4,-1.7 4,-4.5 -3,-0.4 5,-0.5 0.968 109.3 54.3 -69.9 -43.4 11.0 6.8 -1.0 112 8 B K H X5S+ 0 0 134 -4,-1.7 4,-1.8 -5,-0.4 -1,-0.2 0.996 118.5 35.1 -39.7 -52.7 14.4 5.9 -2.9 113 9 B T H X>S+ 0 0 9 -4,-2.8 4,-2.2 2,-0.2 5,-1.4 0.760 115.3 58.8 -73.0 -36.8 16.2 7.0 0.2 114 10 B F H XXS+ 0 0 30 -4,-4.2 5,-1.1 -5,-0.5 4,-0.7 0.960 107.7 42.1 -62.4 -50.3 13.3 5.6 2.1 115 11 B V H <>S+ 0 0 80 -4,-4.5 5,-0.8 1,-0.2 -2,-0.2 0.860 118.3 53.0 -67.7 -26.9 13.9 2.1 0.6 116 12 B Q H <<S+ 0 0 107 1,-0.4 5,-0.8 4,-0.1 4,-0.2 0.621 81.7 16.7-113.1 -73.5 13.0 6.9 29.2 154 50 B D T 5S+ 0 0 105 3,-0.2 -1,-0.4 4,-0.1 3,-0.1 -0.333 101.7 70.5-100.9 146.8 14.8 9.8 28.2 155 51 B A T 5S+ 0 0 8 -2,-0.2 2,-2.5 1,-0.2 3,-0.3 -0.095 104.9 18.9 103.1 124.7 15.1 9.9 24.4 156 52 B N T 5S+ 0 0 23 1,-0.4 4,-0.4 23,-0.2 -12,-0.2 -0.501 146.7 23.7 85.2 -83.4 12.3 10.6 22.3 157 53 B K T > 5S+ 0 0 107 -2,-2.5 3,-4.1 -4,-0.2 -1,-0.4 0.789 100.6 81.0 -53.8-108.1 10.6 11.9 25.3 158 54 B S T 3 - 0 0 87 1,-0.2 4,-1.0 -23,-0.1 3,-0.3 -0.929 68.2 -85.1-132.9-178.8 6.4 19.1 13.0 165 61 B E H > S+ 0 0 70 -2,-0.3 4,-0.9 1,-0.3 -1,-0.2 0.949 127.7 36.3 -56.3 -77.7 7.7 20.3 9.4 166 62 B N H > S+ 0 0 119 2,-0.1 4,-2.0 1,-0.1 -1,-0.3 0.395 107.5 57.0 -23.0 -95.1 11.1 21.6 11.4 167 63 B T H >>S+ 0 0 17 -3,-0.3 4,-3.8 2,-0.2 5,-0.6 0.585 101.3 58.9 -27.9 -27.9 11.8 19.3 14.1 168 64 B L H X5S+ 0 0 6 -4,-1.0 4,-1.0 2,-0.2 5,-0.3 0.949 110.7 43.6 -75.3 -40.0 12.0 16.4 11.4 169 65 B M H X5S+ 0 0 49 -4,-0.9 4,-2.8 3,-0.2 -1,-0.2 0.913 110.0 59.2 -55.8 -47.5 14.9 18.5 9.8 170 66 B E H X5S+ 0 0 108 -4,-2.0 4,-0.7 2,-0.2 -2,-0.2 0.926 120.6 23.6 -43.7 -56.8 15.8 18.8 13.5 171 67 B Y H <5S+ 0 0 34 -4,-3.8 -3,-0.2 2,-0.2 -1,-0.2 0.848 111.6 65.7 -78.5 -50.8 16.0 15.0 13.5 172 68 B L H < S- 0 0 4 1,-0.2 3,-1.0 2,-0.1 -23,-0.2 0.916 99.3-156.5 61.6 30.5 16.9 14.1 21.6 180 76 B P T 3 S+ 0 0 90 0, 0.0 -1,-0.2 0, 0.0 -4,-0.2 -0.159 72.3 46.1 -56.4 117.6 20.7 13.0 21.6 181 77 B G T 3 S+ 0 0 61 -6,-0.8 -2,-0.1 1,-0.2 -5,-0.1 0.293 71.9 161.5 117.7 15.7 20.6 9.2 22.9 182 78 B T < - 0 0 19 -3,-1.0 -1,-0.2 -7,-0.4 -27,-0.1 -0.033 45.7-131.4 -64.5 139.2 17.5 7.8 20.6 183 79 B K S S+ 0 0 123 2,-0.1 2,-0.9 0, 0.0 -1,-0.2 0.509 76.3 110.6 -75.3 8.4 17.8 4.1 20.6 184 80 B M S S- 0 0 75 1,-0.1 2,-1.6 -9,-0.1 -3,-0.1 -0.574 72.7-129.8 -89.1 121.3 17.4 4.1 16.6 185 81 B I + 0 0 168 -2,-0.9 2,-0.7 1,-0.0 -1,-0.1 -0.285 47.3 153.6 -61.2 91.5 20.7 3.1 15.1 186 82 B F - 0 0 65 -2,-1.6 -2,-0.1 1,-0.1 -10,-0.0 -0.837 35.8-162.7-128.3 142.4 21.4 5.9 12.4 187 83 B A - 0 0 95 -2,-0.7 -11,-0.2 -13,-0.1 -1,-0.1 0.905 53.6 -66.6 -73.4 -84.4 24.3 7.3 10.9 188 84 B G - 0 0 9 -14,-0.1 3,-0.0 -13,-0.1 -1,-0.0 0.469 22.4-168.1-136.3 -99.4 23.5 10.7 9.3 189 85 B I + 0 0 11 1,-0.1 2,-0.1 -15,-0.1 -1,-0.0 0.896 35.2 157.2 83.4 59.4 21.7 12.5 6.7 190 86 B K + 0 0 183 1,-0.1 2,-0.5 5,-0.1 3,-0.1 -0.202 35.6 100.8-124.0 44.0 23.5 15.7 7.2 191 87 B K S > S- 0 0 121 1,-0.2 4,-2.0 -2,-0.1 5,-0.5 -0.667 71.4-136.0-129.9 125.1 22.9 17.2 3.8 192 88 B K H >>S+ 0 0 136 -2,-0.5 4,-2.4 3,-0.2 5,-0.8 0.858 106.6 54.2 -25.5 -72.8 20.4 19.9 2.6 193 89 B G H >5S+ 0 0 17 3,-0.2 4,-2.2 1,-0.2 5,-0.2 0.958 122.7 24.6 -33.1 -78.7 19.7 17.5 -0.8 194 90 B E H >5S+ 0 0 63 3,-0.2 4,-3.5 2,-0.2 5,-0.3 0.962 124.4 52.8 -65.6 -40.1 18.8 14.1 1.1 195 91 B R H X5S+ 0 0 69 -4,-2.0 4,-1.8 2,-0.3 -3,-0.2 0.994 112.7 45.2 -77.3 -69.4 17.7 15.9 4.5 196 92 B Q H X5S+ 0 0 106 -4,-2.4 4,-2.7 -5,-0.5 5,-0.4 0.999 116.0 52.1 -29.8 -72.1 15.0 18.4 2.4 197 93 B D H XS+ 0 0 28 -4,-3.5 4,-3.0 -5,-0.4 5,-0.6 0.981 108.5 39.9 -44.4 -57.5 9.2 11.9 1.9 202 98 B L H X>S+ 0 0 31 -4,-1.9 4,-1.0 1,-0.2 5,-0.9 0.981 112.9 54.8 -68.0 -62.7 7.1 11.7 5.4 203 99 B K H <5S+ 0 0 123 -4,-1.6 4,-0.4 -5,-0.3 -1,-0.2 0.930 118.3 34.7 -50.8 -34.4 4.6 14.6 4.4 204 100 B S H <5S+ 0 0 78 -4,-2.2 -2,-0.2 -3,-0.2 -3,-0.2 0.981 131.7 30.1 -76.6 -51.9 3.5 12.6 0.9 205 101 B A H <5S+ 0 0 32 -4,-3.0 -3,-0.2 -5,-0.4 -2,-0.1 0.952 119.1 51.7 -80.3 -56.1 3.8 8.8 2.2 206 102 B T T << 0 0 17 -4,-1.0 -3,-0.2 -5,-0.6 -1,-0.1 0.983 360.0 360.0 -55.7 -69.7 2.8 9.3 6.1 207 103 B S < 0 0 57 -5,-0.9 -124,-0.0 -4,-0.4 -68,-0.0 -0.081 360.0 360.0 -70.9 360.0 -0.6 11.3 5.5