==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 25-APR-08 3CYO . COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; . AUTHOR Z.M.WANG,J.J.DWYER . 73 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6359.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 93.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 63 86.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A T > 0 0 111 0, 0.0 4,-4.4 0, 0.0 5,-0.3 0.000 360.0 360.0 360.0 -27.2 11.9 21.6 20.4 2 4 A V H > + 0 0 120 1,-0.3 4,-1.6 2,-0.2 0, 0.0 0.944 360.0 38.0 -57.7 -48.6 8.2 22.4 20.1 3 5 A Q H > S+ 0 0 174 2,-0.2 4,-1.7 1,-0.2 -1,-0.3 0.857 116.4 55.1 -67.8 -34.6 8.5 23.0 16.3 4 6 A A H > S+ 0 0 56 1,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.929 108.6 46.4 -60.2 -47.2 10.9 20.0 16.3 5 7 A R H X S+ 0 0 118 -4,-4.4 4,-1.9 1,-0.2 -1,-0.2 0.827 105.9 64.2 -63.9 -31.4 8.3 17.8 18.0 6 8 A Q H X S+ 0 0 124 -4,-1.6 4,-1.9 -5,-0.3 -2,-0.2 0.953 102.7 43.5 -60.1 -55.2 5.7 19.1 15.5 7 9 A L H X S+ 0 0 122 -4,-1.7 4,-2.3 1,-0.2 3,-0.3 0.945 114.6 49.3 -56.1 -52.3 7.3 17.7 12.4 8 10 A L H X S+ 0 0 95 -4,-1.5 4,-2.5 1,-0.2 -1,-0.2 0.813 109.2 54.4 -57.2 -33.7 8.1 14.3 14.0 9 11 A S H X S+ 0 0 48 -4,-1.9 4,-1.9 2,-0.2 -1,-0.2 0.857 109.6 45.9 -70.1 -37.8 4.5 14.2 15.2 10 12 A G H X S+ 0 0 37 -4,-1.9 4,-2.3 -3,-0.3 -2,-0.2 0.766 112.2 52.0 -76.3 -26.6 3.2 14.7 11.7 11 13 A I H X S+ 0 0 79 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.915 111.6 45.9 -67.3 -46.8 5.7 12.1 10.4 12 14 A V H X S+ 0 0 16 -4,-2.5 4,-1.4 2,-0.2 -2,-0.2 0.894 115.7 47.4 -62.1 -39.5 4.4 9.6 13.0 13 15 A Q H X S+ 0 0 93 -4,-1.9 4,-2.7 2,-0.2 3,-0.2 0.923 109.0 53.1 -66.4 -47.4 0.9 10.6 12.1 14 16 A Q H X S+ 0 0 98 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.851 106.2 54.3 -56.0 -38.5 1.6 10.3 8.3 15 17 A Q H X S+ 0 0 88 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.864 108.7 48.3 -64.2 -38.6 2.9 6.8 9.0 16 18 A N H X S+ 0 0 39 -4,-1.4 4,-2.3 -3,-0.2 5,-0.3 0.911 109.8 52.7 -65.2 -44.3 -0.4 5.9 10.7 17 19 A D H X S+ 0 0 72 -4,-2.7 4,-2.0 1,-0.2 -2,-0.2 0.938 111.1 47.2 -53.8 -49.3 -2.2 7.4 7.8 18 20 A L H X S+ 0 0 90 -4,-2.6 4,-2.7 1,-0.2 -1,-0.2 0.866 110.1 52.4 -63.2 -37.7 -0.2 5.2 5.4 19 21 A L H X S+ 0 0 15 -4,-1.9 4,-2.4 2,-0.2 -1,-0.2 0.912 109.7 47.1 -67.6 -41.7 -0.7 2.0 7.4 20 22 A R H X S+ 0 0 153 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.872 111.3 53.3 -68.3 -36.2 -4.5 2.4 7.5 21 23 A A H X S+ 0 0 48 -4,-2.0 4,-2.2 -5,-0.3 -2,-0.2 0.941 110.1 47.1 -56.7 -50.7 -4.4 3.1 3.8 22 24 A I H X S+ 0 0 79 -4,-2.7 4,-1.0 1,-0.2 -2,-0.2 0.867 112.3 49.6 -62.6 -37.3 -2.5 -0.1 3.4 23 25 A E H X S+ 0 0 46 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.897 109.4 52.1 -67.1 -40.3 -4.9 -2.0 5.6 24 26 A A H X S+ 0 0 50 -4,-2.5 4,-1.3 1,-0.2 -2,-0.2 0.849 108.0 50.6 -66.0 -37.8 -7.9 -0.6 3.6 25 27 A Q H X S+ 0 0 127 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.757 106.4 57.9 -69.0 -24.7 -6.4 -1.8 0.3 26 28 A Q H X S+ 0 0 19 -4,-1.0 4,-2.5 2,-0.2 5,-0.2 0.950 102.7 51.1 -67.3 -49.6 -6.0 -5.2 2.0 27 29 A H H X S+ 0 0 135 -4,-2.0 4,-1.4 1,-0.2 -2,-0.2 0.869 113.6 48.2 -49.6 -38.8 -9.7 -5.4 2.7 28 30 A L H X S+ 0 0 103 -4,-1.3 4,-2.3 2,-0.2 -1,-0.2 0.840 108.5 51.0 -75.5 -35.5 -10.1 -4.5 -1.0 29 31 A L H X S+ 0 0 97 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.873 108.8 53.2 -67.4 -37.1 -7.6 -7.1 -2.3 30 32 A Q H X S+ 0 0 81 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.901 109.5 48.7 -64.3 -40.7 -9.4 -9.7 -0.2 31 33 A L H X S+ 0 0 112 -4,-1.4 4,-3.2 -5,-0.2 -2,-0.2 0.936 110.1 49.7 -66.0 -45.0 -12.7 -8.8 -1.9 32 34 A T H X S+ 0 0 73 -4,-2.3 4,-2.9 1,-0.2 -1,-0.2 0.854 111.0 51.5 -64.8 -31.5 -11.2 -8.9 -5.4 33 35 A V H X S+ 0 0 21 -4,-2.1 4,-2.3 2,-0.2 -1,-0.2 0.943 110.0 48.3 -67.0 -47.2 -9.8 -12.3 -4.5 34 36 A W H X S+ 0 0 164 -4,-2.5 4,-1.2 2,-0.2 -2,-0.2 0.948 112.8 49.2 -54.6 -50.2 -13.2 -13.4 -3.3 35 37 A G H >X S+ 0 0 26 -4,-3.2 3,-1.6 1,-0.2 4,-0.5 0.972 113.1 44.9 -53.6 -59.2 -14.8 -12.1 -6.5 36 38 A I H >< S+ 0 0 97 -4,-2.9 3,-1.0 1,-0.3 -1,-0.2 0.841 111.6 56.4 -49.3 -35.3 -12.2 -13.8 -8.7 37 39 A K H 3< S+ 0 0 94 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.641 93.5 65.6 -82.3 -15.4 -12.7 -16.9 -6.6 38 40 A Q H << 0 0 103 -3,-1.6 -1,-0.3 -4,-1.2 -2,-0.2 0.650 360.0 360.0 -75.5 -16.1 -16.5 -17.1 -7.2 39 41 A L << 0 0 180 -3,-1.0 -3,-0.0 -4,-0.5 0, 0.0 -0.346 360.0 360.0-106.0 360.0 -15.8 -17.7 -10.9 40 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 41 52 A M > 0 0 171 0, 0.0 3,-0.8 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0-167.8 -3.7 -25.1 -8.8 42 53 A E T >> + 0 0 122 1,-0.2 4,-2.3 2,-0.2 3,-1.3 0.739 360.0 85.1 -72.8 -23.0 -0.8 -23.3 -7.1 43 54 A W H 3> S+ 0 0 83 1,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.861 90.2 50.9 -43.9 -44.7 -2.4 -19.8 -7.6 44 55 A D H <> S+ 0 0 59 -3,-0.8 4,-1.5 1,-0.2 -1,-0.3 0.819 109.2 52.6 -64.1 -32.1 -4.5 -20.4 -4.4 45 56 A R H <> S+ 0 0 148 -3,-1.3 4,-2.3 -4,-0.4 -2,-0.2 0.921 107.9 48.1 -69.4 -47.3 -1.2 -21.3 -2.6 46 57 A E H X S+ 0 0 91 -4,-2.3 4,-2.0 1,-0.2 5,-0.3 0.879 109.0 56.5 -60.9 -38.3 0.6 -18.1 -3.7 47 58 A I H X S+ 0 0 36 -4,-2.0 4,-2.4 -5,-0.3 -1,-0.2 0.917 110.5 42.9 -58.6 -45.0 -2.5 -16.2 -2.5 48 59 A N H X S+ 0 0 91 -4,-1.5 4,-2.1 1,-0.2 5,-0.2 0.852 109.9 56.5 -72.6 -36.3 -2.3 -17.6 0.9 49 60 A N H X S+ 0 0 85 -4,-2.3 4,-1.6 2,-0.2 -1,-0.2 0.896 116.3 35.9 -62.1 -40.0 1.5 -17.3 1.2 50 61 A Y H X S+ 0 0 138 -4,-2.0 4,-3.5 2,-0.2 5,-0.2 0.849 112.2 58.1 -85.4 -36.1 1.3 -13.6 0.6 51 62 A T H X S+ 0 0 27 -4,-2.4 4,-2.0 -5,-0.3 -2,-0.2 0.909 112.3 42.8 -55.4 -44.5 -1.9 -12.9 2.4 52 63 A S H X S+ 0 0 76 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.938 113.9 51.6 -65.5 -48.7 -0.2 -14.4 5.5 53 64 A L H X S+ 0 0 77 -4,-1.6 4,-2.3 -5,-0.2 -2,-0.2 0.911 112.8 45.4 -53.6 -47.1 2.9 -12.4 4.8 54 65 A I H X S+ 0 0 43 -4,-3.5 4,-2.1 2,-0.2 -1,-0.2 0.830 110.9 50.8 -74.0 -32.7 1.0 -9.2 4.4 55 66 A H H X S+ 0 0 95 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.869 110.9 52.5 -69.6 -32.6 -1.1 -9.7 7.5 56 67 A S H X S+ 0 0 73 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.951 109.8 46.8 -60.5 -51.4 2.2 -10.4 9.3 57 68 A L H X S+ 0 0 87 -4,-2.3 4,-2.5 1,-0.2 -2,-0.2 0.868 109.8 53.2 -64.7 -37.8 3.7 -7.1 8.1 58 69 A I H X S+ 0 0 15 -4,-2.1 4,-3.0 2,-0.2 -1,-0.2 0.920 108.6 50.9 -62.6 -42.0 0.7 -5.1 9.0 59 70 A E H X S+ 0 0 116 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.975 110.5 47.2 -60.1 -57.1 0.8 -6.5 12.5 60 71 A K H X S+ 0 0 146 -4,-2.3 4,-3.3 1,-0.2 5,-0.2 0.918 113.6 49.4 -47.3 -49.0 4.5 -5.6 13.0 61 72 A S H X S+ 0 0 53 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.933 108.6 52.1 -60.3 -46.7 3.8 -2.1 11.6 62 73 A Q H X S+ 0 0 73 -4,-3.0 4,-1.7 2,-0.2 -1,-0.2 0.883 112.8 46.4 -54.7 -39.9 0.8 -1.6 13.9 63 74 A N H X S+ 0 0 88 -4,-2.4 4,-1.9 1,-0.2 3,-0.3 0.971 113.0 47.6 -69.5 -51.7 3.1 -2.6 16.8 64 75 A Q H X S+ 0 0 92 -4,-3.3 4,-2.3 1,-0.2 -2,-0.2 0.798 108.6 56.5 -58.5 -29.6 5.9 -0.3 15.6 65 76 A Q H X S+ 0 0 12 -4,-2.7 4,-1.8 -5,-0.2 -1,-0.2 0.924 106.4 49.5 -67.6 -40.2 3.4 2.5 15.2 66 77 A E H X S+ 0 0 121 -4,-1.7 4,-0.8 -3,-0.3 -2,-0.2 0.837 112.7 47.2 -68.3 -33.8 2.4 2.1 18.8 67 78 A K H X S+ 0 0 105 -4,-1.9 4,-2.7 2,-0.2 3,-0.5 0.912 109.6 52.0 -72.8 -43.2 6.0 2.2 20.0 68 79 A N H X S+ 0 0 49 -4,-2.3 4,-1.1 1,-0.2 -2,-0.2 0.858 109.5 51.2 -61.7 -34.5 6.9 5.2 17.9 69 80 A E H X S+ 0 0 72 -4,-1.8 4,-0.7 2,-0.2 -1,-0.2 0.759 111.7 47.3 -74.5 -22.8 3.9 7.1 19.3 70 81 A Q H < S+ 0 0 103 -4,-0.8 -2,-0.2 -3,-0.5 -1,-0.2 0.871 110.4 49.6 -83.0 -40.8 5.0 6.3 22.8 71 82 A E H >< S+ 0 0 108 -4,-2.7 3,-0.6 1,-0.2 -2,-0.2 0.747 111.8 51.4 -69.2 -23.0 8.7 7.2 22.3 72 83 A L H 3< S+ 0 0 32 -4,-1.1 -1,-0.2 -5,-0.3 -2,-0.2 0.757 102.1 58.4 -82.2 -29.1 7.4 10.5 20.8 73 84 A L T 3< 0 0 135 -4,-0.7 -1,-0.2 -5,-0.1 -2,-0.2 0.169 360.0 360.0 -84.1 18.1 5.2 11.1 23.9 74 85 A E < 0 0 134 -3,-0.6 -3,-0.0 0, 0.0 0, 0.0 -0.846 360.0 360.0-136.4 360.0 8.4 10.9 25.8