==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT (HEME PROTEIN) 14-JAN-88 5CYT . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: THUNNUS ALALUNGA; . AUTHOR T.TAKANO . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6100.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 32.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 R G 0 0 63 0, 0.0 2,-0.5 0, 0.0 92,-0.1 0.000 360.0 360.0 360.0 148.9 -4.2 -3.8 12.4 2 2 R D > - 0 0 99 1,-0.1 4,-1.9 2,-0.0 95,-0.2 -0.935 360.0-145.5-109.7 126.2 -6.8 -5.6 14.5 3 3 R V H > S+ 0 0 66 -2,-0.5 4,-2.2 1,-0.2 5,-0.2 0.861 96.3 51.8 -54.3 -43.8 -5.5 -7.3 17.7 4 4 R A H > S+ 0 0 82 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.921 111.0 46.8 -67.6 -38.3 -7.8 -10.3 17.6 5 5 R K H > S+ 0 0 111 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.853 110.5 54.5 -70.0 -28.2 -6.9 -11.2 14.1 6 6 R G H X S+ 0 0 0 -4,-1.9 4,-2.7 87,-0.4 -2,-0.2 0.847 104.3 54.1 -72.8 -32.2 -3.2 -10.8 15.0 7 7 R K H X S+ 0 0 117 -4,-2.2 4,-2.7 2,-0.2 5,-0.3 0.936 106.9 52.0 -64.5 -40.2 -3.6 -13.2 17.9 8 8 R K H X S+ 0 0 121 -4,-1.8 4,-2.7 1,-0.2 -2,-0.2 0.949 111.9 45.6 -59.6 -45.9 -5.0 -15.7 15.4 9 9 R T H X S+ 0 0 4 -4,-2.2 4,-2.7 1,-0.2 5,-0.4 0.895 110.3 54.9 -65.3 -38.9 -2.0 -15.3 13.2 10 10 R F H X>S+ 0 0 10 -4,-2.7 4,-2.8 2,-0.2 5,-2.2 0.937 112.0 41.9 -59.1 -48.8 0.3 -15.5 16.1 11 11 R V H <5S+ 0 0 87 -4,-2.7 5,-0.2 1,-0.2 -2,-0.2 0.940 117.0 48.9 -68.9 -36.2 -1.1 -18.9 17.2 12 12 R Q H <5S+ 0 0 117 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.895 130.9 12.9 -62.8 -48.3 -1.2 -20.2 13.7 13 13 R K H <5S+ 0 0 67 -4,-2.7 -2,-0.2 -5,-0.2 -3,-0.2 0.611 133.5 26.3-110.3 -19.2 2.3 -19.2 12.6 14 14 R C T >X5S+ 0 0 20 -4,-2.8 3,-2.2 -5,-0.4 4,-1.3 0.648 91.9 81.1-117.6 -37.6 4.5 -18.2 15.6 15 15 R A T 34 S- 0 0 98 1,-0.1 3,-2.5 12,-0.1 12,-0.4 -0.326 80.3 -93.6 -76.4 155.9 4.0 -13.6 28.2 22 22 R N T 3 S+ 0 0 117 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.456 116.3 12.5 -64.4 119.7 6.0 -12.1 31.1 23 23 R G T 3 S+ 0 0 70 -2,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.524 96.0 152.0 90.1 1.1 8.1 -14.9 32.5 24 24 R G < - 0 0 15 -3,-2.5 -1,-0.2 1,-0.1 7,-0.2 -0.261 45.0-103.0 -68.8 155.6 7.3 -17.1 29.5 25 25 R K - 0 0 161 5,-0.1 2,-1.1 1,-0.1 -6,-0.4 -0.389 23.6-111.5 -71.1 161.8 9.8 -19.8 28.3 26 26 R H + 0 0 66 1,-0.2 -8,-0.1 4,-0.1 -1,-0.1 -0.741 42.5 178.3 -88.8 96.7 12.1 -19.7 25.4 27 27 R K S S- 0 0 126 -2,-1.1 -1,-0.2 2,-0.6 -9,-0.2 0.988 70.8 -41.6 -71.3 -59.8 10.3 -22.4 23.4 28 28 R V S S+ 0 0 93 -11,-1.8 -10,-0.2 1,-0.5 -11,-0.1 0.450 138.5 30.8-134.0 -49.1 12.4 -22.5 20.2 29 29 R G S S- 0 0 8 -12,-2.8 -2,-0.6 1,-0.1 -1,-0.5 -0.378 108.4 -71.9 -97.1 175.0 12.9 -18.9 19.8 30 30 R P - 0 0 15 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 -0.419 50.7 -96.6 -67.3 147.6 13.2 -16.3 22.6 31 31 R N - 0 0 16 -7,-0.2 -11,-0.2 13,-0.1 -5,-0.1 -0.249 31.4-146.5 -55.5 140.7 10.3 -15.1 24.8 32 32 R L > + 0 0 20 -13,-2.4 3,-1.9 -3,-0.1 4,-0.2 0.290 48.4 132.7-103.2 6.5 9.0 -11.9 23.4 33 33 R W T 3 S+ 0 0 85 -12,-0.4 70,-0.2 1,-0.3 -12,-0.1 -0.393 80.7 15.7 -63.1 131.5 7.9 -10.0 26.5 34 34 R G T 3 S+ 0 0 35 68,-2.9 -1,-0.3 -14,-0.2 69,-0.1 0.588 84.3 141.8 82.6 9.8 9.3 -6.5 26.4 35 35 R L X + 0 0 7 -3,-1.9 3,-2.1 67,-0.1 24,-0.3 0.848 43.0 84.7 -49.7 -51.2 10.0 -6.6 22.6 36 36 R F T 3 S+ 0 0 49 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.482 103.2 12.4 -70.0 126.1 9.0 -3.1 21.7 37 37 R G T 3 S+ 0 0 59 22,-3.3 2,-0.3 1,-0.3 -1,-0.3 0.398 101.2 122.3 91.9 -5.7 11.8 -0.6 22.3 38 38 R R < - 0 0 40 -3,-2.1 21,-2.8 21,-0.4 -1,-0.3 -0.731 61.8-123.2 -95.1 148.1 14.4 -3.4 22.8 39 39 R K B > -A 58 0A 131 -2,-0.3 3,-0.6 19,-0.2 19,-0.2 -0.297 45.4 -84.6 -67.5 166.6 17.6 -3.8 20.8 40 40 R T T 3 S+ 0 0 6 17,-1.3 -1,-0.1 1,-0.2 16,-0.0 -0.307 107.7 26.7 -66.8 159.0 18.1 -7.2 19.1 41 41 R G T 3 S+ 0 0 15 -3,-0.1 -1,-0.2 1,-0.1 7,-0.2 0.767 83.7 121.2 71.5 26.4 19.5 -10.1 20.9 42 42 R Q < + 0 0 101 -3,-0.6 2,-0.2 2,-0.1 -2,-0.1 0.433 22.4 117.3-105.2 -11.1 18.4 -9.1 24.4 43 43 R A S > S- 0 0 12 1,-0.1 3,-1.5 2,-0.1 2,-0.2 -0.520 70.0-114.3 -66.0 127.1 16.2 -11.8 25.9 44 44 R E T 3 S+ 0 0 186 1,-0.2 -13,-0.1 -2,-0.2 -1,-0.1 -0.431 93.9 15.8 -65.2 132.9 18.0 -13.1 29.0 45 45 R G T 3 S+ 0 0 76 1,-0.3 2,-0.4 -2,-0.2 -1,-0.2 0.542 96.6 117.0 86.6 8.5 19.0 -16.7 28.9 46 46 R Y < - 0 0 44 -3,-1.5 2,-0.9 -5,-0.1 -1,-0.3 -0.915 59.3-138.1-111.9 138.8 18.7 -17.1 25.1 47 47 R S - 0 0 96 -2,-0.4 2,-0.1 -3,-0.1 -3,-0.0 -0.757 29.3-172.6 -93.6 99.5 21.6 -17.9 22.8 48 48 R Y - 0 0 29 -2,-0.9 2,-0.1 -7,-0.2 30,-0.0 -0.473 26.9 -99.6 -85.0 164.9 21.2 -15.8 19.7 49 49 R T > - 0 0 27 -2,-0.1 4,-2.4 1,-0.1 5,-0.2 -0.444 27.9-119.8 -70.4 156.7 23.1 -15.8 16.4 50 50 R D H > S+ 0 0 128 2,-0.2 4,-1.9 1,-0.2 -1,-0.1 0.816 115.5 61.9 -64.9 -27.1 25.8 -13.2 15.8 51 51 R A H 4 S+ 0 0 12 26,-0.3 4,-0.2 2,-0.2 -1,-0.2 0.950 106.3 42.8 -64.4 -46.6 23.7 -12.2 12.9 52 52 R N H >4 S+ 0 0 13 1,-0.2 3,-1.6 2,-0.2 4,-0.4 0.946 114.9 49.7 -63.6 -49.2 20.8 -11.2 15.1 53 53 R K H 3< S+ 0 0 123 -4,-2.4 3,-0.3 1,-0.3 -1,-0.2 0.787 111.8 49.2 -61.9 -27.9 23.1 -9.5 17.7 54 54 R S T 3< S+ 0 0 90 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.322 78.8 100.1 -92.2 2.8 24.9 -7.5 15.1 55 55 R K S < S- 0 0 71 -3,-1.6 -1,-0.2 -4,-0.2 -2,-0.1 0.881 72.8-145.6 -70.2 -24.7 21.8 -6.1 13.2 56 56 R G + 0 0 74 -4,-0.4 2,-0.3 -3,-0.3 -1,-0.1 0.839 51.9 118.5 77.1 24.3 22.0 -2.8 14.9 57 57 R I - 0 0 34 -19,-0.0 -17,-1.3 6,-0.0 2,-0.4 -0.808 58.3-128.8-121.1 166.5 18.2 -2.1 15.1 58 58 R V B -A 39 0A 65 -2,-0.3 2,-0.5 -19,-0.2 -19,-0.2 -0.894 32.8-116.6-111.7 134.5 15.5 -1.5 17.8 59 59 R W + 0 0 14 -21,-2.8 -22,-3.3 -2,-0.4 -21,-0.4 -0.677 56.9 131.8 -75.1 122.4 12.3 -3.5 17.5 60 60 R N S > S- 0 0 63 -2,-0.5 4,-2.8 -24,-0.2 5,-0.3 -0.875 72.9 -73.9-155.5-177.8 9.3 -1.3 16.9 61 61 R N H > S+ 0 0 67 -2,-0.3 4,-2.0 1,-0.2 5,-0.2 0.929 128.5 48.1 -54.6 -41.1 6.3 -1.3 14.5 62 62 R D H > S+ 0 0 116 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.935 114.8 40.4 -68.3 -51.3 8.4 -0.2 11.6 63 63 R T H > S+ 0 0 17 -5,-0.2 4,-2.9 1,-0.2 5,-0.2 0.898 114.4 54.2 -71.4 -30.8 11.3 -2.7 12.0 64 64 R L H X S+ 0 0 7 -4,-2.8 4,-2.8 1,-0.2 -1,-0.2 0.894 105.5 52.8 -64.4 -40.8 8.9 -5.6 12.8 65 65 R M H X S+ 0 0 37 -4,-2.0 4,-0.8 -5,-0.3 -1,-0.2 0.896 114.2 43.6 -62.6 -36.4 6.9 -5.0 9.7 66 66 R E H >X S+ 0 0 103 -4,-1.6 4,-1.0 -5,-0.2 3,-0.6 0.947 115.2 47.0 -71.5 -47.5 10.0 -5.2 7.6 67 67 R Y H >< S+ 0 0 19 -4,-2.9 3,-0.8 1,-0.2 7,-0.2 0.934 108.5 55.0 -59.4 -49.1 11.5 -8.2 9.4 68 68 R L H 3< S+ 0 0 14 -4,-2.8 17,-2.6 1,-0.3 -1,-0.2 0.720 97.8 63.6 -68.7 -13.5 8.3 -10.2 9.3 69 69 R E H << S- 0 0 89 -4,-0.8 -1,-0.3 -3,-0.6 -2,-0.2 0.909 132.1 -8.2 -71.9 -39.4 8.0 -9.9 5.5 70 70 R N S+ 0 0 0 0, 0.0 4,-2.8 0, 0.0 7,-0.1 0.900 85.3 51.3 -47.3 -47.9 13.3 -12.6 8.1 72 72 R K H 4 S+ 0 0 130 10,-0.4 6,-0.1 1,-0.2 5,-0.1 0.807 108.8 51.1 -72.0 -19.1 16.3 -13.9 6.2 73 73 R K H 4 S+ 0 0 155 -3,-0.5 -1,-0.2 -6,-0.2 -6,-0.1 0.872 114.3 43.3 -83.9 -29.7 16.6 -10.9 4.0 74 74 R Y H < S+ 0 0 19 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.874 131.5 22.4 -78.4 -38.4 16.5 -8.5 6.9 75 75 R I S >< S- 0 0 2 -4,-2.8 3,-2.1 -5,-0.2 -1,-0.3 -0.735 82.1-155.1-129.9 79.8 18.9 -10.6 9.1 76 76 R P T 3 S+ 0 0 93 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.358 81.7 23.9 -56.5 128.5 21.0 -12.9 6.9 77 77 R G T 3 S+ 0 0 59 1,-0.3 -26,-0.3 -5,-0.1 -25,-0.2 0.411 83.9 148.9 94.7 -0.7 22.2 -15.8 8.9 78 78 R T < - 0 0 19 -3,-2.1 -1,-0.3 -6,-0.1 -3,-0.0 -0.356 48.0-138.6 -65.3 150.4 19.4 -15.8 11.5 79 79 R K S S+ 0 0 108 2,-0.1 2,-0.8 -7,-0.0 -1,-0.1 0.458 74.0 107.9 -93.6 6.7 18.4 -19.2 12.9 80 80 R M - 0 0 49 -9,-0.1 2,-1.0 1,-0.0 -2,-0.1 -0.661 59.4-158.5 -81.0 109.3 14.8 -18.3 12.7 81 81 R I + 0 0 157 -2,-0.8 2,-0.3 -10,-0.1 -2,-0.1 -0.806 40.7 123.5 -98.7 96.2 13.5 -20.4 9.9 82 82 R F - 0 0 59 -2,-1.0 -10,-0.4 1,-0.1 3,-0.1 -0.920 53.7-143.8-153.9 128.4 10.3 -18.7 8.6 83 83 R A - 0 0 73 -2,-0.3 2,-0.1 1,-0.2 -11,-0.1 0.786 53.6-114.1 -70.6 -27.1 9.6 -17.5 5.1 84 84 R G - 0 0 14 -14,-0.2 2,-0.7 -13,-0.1 -15,-0.2 -0.352 19.3 -80.0 120.5 163.3 7.6 -14.5 6.2 85 85 R I - 0 0 1 -17,-2.6 6,-0.1 1,-0.1 -3,-0.0 -0.893 40.8-175.1-101.0 105.6 4.1 -13.0 6.1 86 86 R K + 0 0 112 -2,-0.7 2,-0.4 4,-0.0 -1,-0.1 0.835 56.4 85.4 -77.7 -29.8 3.9 -11.6 2.7 87 87 R K > - 0 0 146 1,-0.2 4,-2.1 2,-0.0 5,-0.2 -0.623 68.1-148.8 -77.3 124.2 0.4 -9.9 3.1 88 88 R K H > S+ 0 0 128 -2,-0.4 4,-2.6 1,-0.2 -1,-0.2 0.840 94.0 54.3 -57.9 -40.6 0.8 -6.4 4.6 89 89 R G H > S+ 0 0 35 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.900 108.8 47.3 -65.6 -40.2 -2.6 -6.5 6.3 90 90 R E H > S+ 0 0 36 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.909 111.7 51.8 -68.1 -35.6 -1.9 -9.8 8.1 91 91 R R H X S+ 0 0 15 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.907 108.5 51.3 -66.2 -38.4 1.5 -8.4 9.1 92 92 R Q H X S+ 0 0 82 -4,-2.6 4,-2.3 2,-0.2 -1,-0.2 0.896 109.4 49.4 -65.6 -38.4 -0.2 -5.3 10.5 93 93 R D H X S+ 0 0 27 -4,-2.1 4,-2.4 2,-0.2 -87,-0.4 0.924 111.5 50.4 -62.4 -46.0 -2.7 -7.3 12.5 94 94 R L H X S+ 0 0 1 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.901 110.5 47.7 -60.3 -42.7 0.2 -9.4 13.9 95 95 R V H X S+ 0 0 5 -4,-2.5 4,-2.8 2,-0.2 5,-0.2 0.920 109.5 54.4 -71.4 -32.3 2.2 -6.3 14.9 96 96 R A H X S+ 0 0 24 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.926 111.1 45.7 -63.3 -40.5 -0.9 -4.8 16.6 97 97 R Y H X S+ 0 0 25 -4,-2.4 4,-2.4 -95,-0.2 -2,-0.2 0.937 111.0 51.5 -66.2 -45.9 -1.3 -8.0 18.6 98 98 R L H X S+ 0 0 8 -4,-2.7 4,-1.5 1,-0.2 -2,-0.2 0.915 108.7 52.1 -59.4 -38.7 2.4 -8.2 19.6 99 99 R K H < S+ 0 0 96 -4,-2.8 4,-0.3 1,-0.2 3,-0.2 0.928 114.8 43.0 -63.3 -35.8 2.3 -4.6 20.8 100 100 R S H < S+ 0 0 69 -4,-1.8 3,-0.3 1,-0.2 -1,-0.2 0.789 117.7 43.2 -75.4 -36.5 -0.7 -5.4 22.9 101 101 R A H < S+ 0 0 24 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.553 104.3 60.4 -89.8 -14.2 0.5 -8.7 24.3 102 102 R T < 0 0 2 -4,-1.5 -68,-2.9 -3,-0.2 -1,-0.2 0.317 360.0 360.0-111.3 16.2 4.2 -8.0 25.1 103 103 R S 0 0 127 -3,-0.3 -81,-0.1 -4,-0.3 -70,-0.0 -0.898 360.0 360.0-154.0 360.0 3.8 -5.2 27.7