==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 20-JUL-05 2CZY . COMPND 2 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3B; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.NOMURA,H.UDA-TOCHIO,K.MURAI,N.MORI,Y.NISHIMURA . 92 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6381.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 70.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 31 A P 0 0 133 0, 0.0 2,-2.0 0, 0.0 5,-0.4 0.000 360.0 360.0 360.0 98.0 2.6 14.1 -6.4 2 32 A V + 0 0 35 63,-0.2 2,-0.2 4,-0.1 64,-0.0 -0.447 360.0 132.4 -67.6 83.9 2.1 11.6 -3.5 3 33 A H S >> S- 0 0 125 -2,-2.0 4,-2.4 81,-0.0 3,-0.5 -0.637 77.8 -76.8-125.1-176.7 -0.7 13.5 -1.8 4 34 A V H 3> S+ 0 0 91 1,-0.3 4,-1.7 2,-0.2 5,-0.1 0.791 131.6 54.6 -52.6 -28.8 -4.2 12.8 -0.3 5 35 A E H 3> S+ 0 0 141 2,-0.2 4,-2.1 1,-0.2 -1,-0.3 0.895 107.7 46.9 -73.0 -41.5 -5.4 12.8 -3.9 6 36 A D H <> S+ 0 0 61 -3,-0.5 4,-1.6 -5,-0.4 -2,-0.2 0.876 115.4 46.0 -67.8 -38.4 -2.9 10.1 -5.0 7 37 A A H X S+ 0 0 1 -4,-2.4 4,-1.7 2,-0.2 -1,-0.2 0.841 110.3 55.0 -72.9 -34.2 -3.7 8.0 -2.0 8 38 A L H X S+ 0 0 61 -4,-1.7 4,-1.9 -5,-0.3 -2,-0.2 0.960 110.2 43.3 -63.5 -53.5 -7.4 8.4 -2.5 9 39 A T H X S+ 0 0 60 -4,-2.1 4,-2.5 1,-0.2 5,-0.2 0.897 108.8 59.9 -59.5 -42.4 -7.4 7.2 -6.1 10 40 A Y H X S+ 0 0 17 -4,-1.6 4,-1.8 1,-0.2 -1,-0.2 0.910 106.7 46.2 -52.6 -46.9 -5.1 4.3 -5.2 11 41 A L H X S+ 0 0 16 -4,-1.7 4,-1.5 1,-0.2 -1,-0.2 0.909 113.4 48.5 -63.7 -43.4 -7.6 3.0 -2.7 12 42 A D H X S+ 0 0 100 -4,-1.9 4,-1.7 1,-0.2 -1,-0.2 0.805 111.7 51.0 -67.0 -29.5 -10.5 3.4 -5.2 13 43 A Q H X S+ 0 0 78 -4,-2.5 4,-1.7 2,-0.2 -1,-0.2 0.812 110.2 48.4 -76.9 -31.4 -8.4 1.6 -7.9 14 44 A V H X S+ 0 0 0 -4,-1.8 4,-0.7 -5,-0.2 -2,-0.2 0.738 111.0 51.8 -79.4 -24.8 -7.6 -1.3 -5.5 15 45 A K H < S+ 0 0 117 -4,-1.5 6,-0.2 2,-0.2 -2,-0.2 0.901 113.7 41.3 -77.8 -44.3 -11.3 -1.6 -4.6 16 46 A I H >< S+ 0 0 110 -4,-1.7 3,-1.9 1,-0.2 4,-0.2 0.950 113.8 50.9 -68.7 -51.1 -12.6 -1.8 -8.2 17 47 A R H 3< S+ 0 0 135 -4,-1.7 3,-0.2 1,-0.3 -1,-0.2 0.799 120.9 37.6 -57.4 -29.2 -9.8 -4.0 -9.6 18 48 A F T >< S+ 0 0 30 -4,-0.7 3,-1.5 1,-0.2 -1,-0.3 -0.190 75.3 129.3-115.7 39.2 -10.5 -6.4 -6.6 19 49 A G T < S+ 0 0 64 -3,-1.9 -1,-0.2 1,-0.3 -2,-0.1 0.791 79.9 45.0 -63.2 -28.0 -14.3 -6.0 -6.6 20 50 A S T 3 S+ 0 0 109 -3,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.313 112.1 57.7 -97.3 6.8 -14.7 -9.8 -6.6 21 51 A D <> + 0 0 78 -3,-1.5 4,-0.9 -6,-0.2 3,-0.4 -0.714 51.1 166.9-140.2 86.7 -12.0 -10.2 -4.0 22 52 A P H > S+ 0 0 97 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.756 74.4 71.1 -69.8 -25.1 -12.6 -8.4 -0.6 23 53 A A H > S+ 0 0 72 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.907 96.4 50.3 -57.9 -44.3 -9.8 -10.4 1.0 24 54 A T H > S+ 0 0 19 -3,-0.4 4,-1.8 2,-0.2 -1,-0.2 0.916 111.2 48.5 -61.1 -45.1 -7.1 -8.5 -1.0 25 55 A Y H X S+ 0 0 43 -4,-0.9 4,-1.8 -7,-0.3 3,-0.2 0.947 110.8 49.2 -60.8 -50.9 -8.6 -5.1 0.0 26 56 A N H X S+ 0 0 113 -4,-2.7 4,-1.6 1,-0.2 -1,-0.2 0.818 108.5 56.8 -59.1 -31.1 -8.8 -6.0 3.7 27 57 A G H X S+ 0 0 7 -4,-1.7 4,-1.8 -5,-0.2 -1,-0.2 0.912 103.9 50.4 -67.8 -43.4 -5.2 -7.2 3.5 28 58 A F H X S+ 0 0 3 -4,-1.8 4,-1.9 -3,-0.2 5,-0.2 0.912 110.1 50.2 -61.1 -44.3 -3.9 -3.8 2.2 29 59 A L H X S+ 0 0 32 -4,-1.8 4,-3.3 1,-0.2 5,-0.3 0.867 106.2 57.0 -62.4 -37.0 -5.7 -1.9 5.0 30 60 A E H X S+ 0 0 93 -4,-1.6 4,-3.0 2,-0.2 -1,-0.2 0.915 105.8 49.9 -60.8 -44.7 -4.2 -4.3 7.6 31 61 A I H X S+ 0 0 5 -4,-1.8 4,-1.5 2,-0.2 -2,-0.2 0.954 117.6 38.5 -59.4 -53.2 -0.6 -3.5 6.5 32 62 A M H X S+ 0 0 1 -4,-1.9 4,-1.8 2,-0.2 3,-0.3 0.946 119.3 47.1 -63.7 -50.2 -1.2 0.3 6.6 33 63 A K H X S+ 0 0 110 -4,-3.3 4,-1.2 1,-0.2 -2,-0.2 0.883 111.3 52.4 -59.3 -39.8 -3.3 0.1 9.8 34 64 A E H <>S+ 0 0 84 -4,-3.0 5,-1.1 -5,-0.3 6,-1.0 0.820 106.6 54.3 -66.3 -31.2 -0.7 -2.2 11.4 35 65 A F H ><5S+ 0 0 31 -4,-1.5 3,-1.8 -3,-0.3 -1,-0.2 0.889 101.6 57.0 -70.0 -40.3 2.0 0.2 10.6 36 66 A K H 3<5S+ 0 0 72 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.848 97.5 63.1 -59.4 -34.7 0.3 3.1 12.3 37 67 A S T 3<5S- 0 0 83 -4,-1.2 -1,-0.3 -5,-0.2 -2,-0.2 0.670 110.5-125.8 -64.6 -16.1 0.2 1.0 15.5 38 68 A Q T < 5S+ 0 0 185 -3,-1.8 -3,-0.2 -4,-0.3 -2,-0.1 0.882 83.8 101.7 71.4 39.5 4.0 1.2 15.4 39 69 A S < + 0 0 102 -5,-1.1 2,-0.3 1,-0.2 -4,-0.2 0.719 60.5 67.0-116.5 -51.4 4.4 -2.6 15.5 40 70 A I S S- 0 0 46 -6,-1.0 -1,-0.2 -9,-0.1 -2,-0.1 -0.611 79.5-131.2 -79.6 131.1 5.1 -3.8 12.0 41 71 A D > - 0 0 117 -2,-0.3 4,-0.9 -3,-0.1 3,-0.3 -0.152 25.7-101.4 -73.2 172.7 8.5 -2.8 10.6 42 72 A T H >> S+ 0 0 14 1,-0.2 3,-2.1 2,-0.2 4,-1.7 0.975 120.0 56.0 -60.1 -58.4 9.0 -1.2 7.1 43 73 A P H 3> S+ 0 0 64 0, 0.0 4,-1.7 0, 0.0 -1,-0.2 0.787 104.6 57.3 -45.1 -31.3 10.2 -4.4 5.4 44 74 A G H 3> S+ 0 0 17 -3,-0.3 4,-1.8 2,-0.2 -2,-0.2 0.831 104.7 49.9 -71.6 -32.4 7.0 -6.0 6.6 45 75 A V H X S+ 0 0 115 -4,-1.8 4,-3.5 1,-0.2 3,-0.5 0.928 115.6 47.0 -57.1 -48.0 3.0 -7.9 2.2 49 79 A V H 3X S+ 0 0 0 -4,-1.8 4,-2.5 1,-0.2 -1,-0.2 0.900 108.3 55.4 -61.5 -42.1 2.3 -5.6 -0.7 50 80 A S H 3< S+ 0 0 18 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.763 118.2 35.9 -62.5 -24.8 4.9 -7.3 -2.8 51 81 A Q H X< S+ 0 0 145 -4,-1.3 3,-1.1 -3,-0.5 -2,-0.2 0.781 113.2 56.6 -96.5 -35.5 3.0 -10.6 -2.2 52 82 A L H 3< S+ 0 0 28 -4,-3.5 3,-0.3 1,-0.3 2,-0.2 0.913 117.0 35.3 -62.8 -44.4 -0.6 -9.1 -2.2 53 83 A F T >< S+ 0 0 3 -4,-2.5 3,-1.2 -5,-0.2 7,-0.3 -0.361 74.6 135.5-107.0 51.1 -0.1 -7.7 -5.7 54 84 A H T < S+ 0 0 152 -3,-1.1 -1,-0.2 1,-0.3 -2,-0.1 0.813 82.6 36.6 -66.7 -30.8 2.0 -10.5 -7.1 55 85 A E T 3 S+ 0 0 154 -3,-0.3 -1,-0.3 -4,-0.1 -2,-0.1 0.000 107.2 77.5-110.3 26.6 -0.1 -10.5 -10.3 56 86 A H <> + 0 0 54 -3,-1.2 4,-2.0 1,-0.1 3,-0.3 -0.797 45.1 171.0-140.1 95.1 -0.6 -6.7 -10.4 57 87 A P H > S+ 0 0 92 0, 0.0 4,-3.2 0, 0.0 5,-0.3 0.941 82.0 57.6 -67.7 -48.9 2.3 -4.5 -11.6 58 88 A D H > S+ 0 0 126 1,-0.2 4,-1.2 2,-0.2 5,-0.0 0.720 111.4 47.3 -55.2 -20.6 0.3 -1.2 -11.7 59 89 A L H > S+ 0 0 9 -3,-0.3 4,-2.1 2,-0.2 5,-0.2 0.937 113.7 41.3 -85.7 -56.6 -0.4 -1.9 -8.0 60 90 A I H X S+ 0 0 18 -4,-2.0 4,-1.2 -7,-0.3 -2,-0.2 0.810 119.8 49.5 -61.0 -29.0 3.1 -2.7 -6.8 61 91 A V H X S+ 0 0 88 -4,-3.2 4,-1.5 2,-0.2 -1,-0.2 0.931 106.2 53.0 -75.8 -47.9 4.3 0.1 -9.0 62 92 A G H < S+ 0 0 23 -4,-1.2 -2,-0.2 -5,-0.3 3,-0.2 0.876 113.9 43.9 -54.9 -39.5 1.9 2.7 -7.8 63 93 A F H >X S+ 0 0 0 -4,-2.1 3,-1.9 1,-0.2 4,-1.3 0.823 105.1 63.0 -74.8 -32.6 2.9 2.0 -4.2 64 94 A N H 3< S+ 0 0 43 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.805 92.0 65.9 -61.4 -30.1 6.6 2.0 -5.2 65 95 A A T 3< S+ 0 0 74 -4,-1.5 -1,-0.3 1,-0.2 -63,-0.2 0.577 103.8 47.2 -69.1 -8.8 6.2 5.7 -6.2 66 96 A F T <4 S+ 0 0 9 -3,-1.9 -2,-0.2 -4,-0.1 -1,-0.2 0.794 94.2 82.3 -99.8 -38.8 5.5 6.4 -2.5 67 97 A L S < S- 0 0 16 -4,-1.3 6,-0.1 1,-0.1 5,-0.1 -0.458 79.2-125.8 -70.5 138.0 8.4 4.5 -0.9 68 98 A P - 0 0 67 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.120 31.7 -92.0 -75.8 177.0 11.8 6.3 -0.8 69 99 A L S S+ 0 0 136 1,-0.2 3,-0.4 3,-0.1 -2,-0.1 0.806 121.8 64.4 -60.2 -29.9 15.1 5.0 -2.1 70 100 A G S S+ 0 0 67 1,-0.3 2,-0.9 2,-0.0 -1,-0.2 0.982 111.0 29.1 -58.0 -63.5 15.8 3.6 1.4 71 101 A Y S S+ 0 0 119 -29,-0.0 -1,-0.3 2,-0.0 2,-0.1 -0.768 84.3 170.9-104.2 88.3 13.0 1.1 1.5 72 102 A R - 0 0 144 -2,-0.9 2,-0.4 -3,-0.4 -26,-0.1 -0.250 32.8-103.2 -87.3 178.8 12.3 -0.0 -2.0 73 103 A I - 0 0 18 -6,-0.1 2,-0.3 -2,-0.1 -26,-0.1 -0.865 27.8-152.7-109.2 140.4 10.1 -2.9 -3.3 74 104 A D - 0 0 117 -2,-0.4 0, 0.0 -28,-0.1 0, 0.0 -0.784 8.9-146.0-110.3 154.4 11.3 -6.3 -4.5 75 105 A I - 0 0 135 -2,-0.3 2,-0.2 2,-0.0 -24,-0.0 -0.701 16.8-153.7-120.5 78.7 9.7 -8.7 -6.9 76 106 A P 0 0 104 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.318 360.0 360.0 -54.9 115.3 10.6 -12.2 -5.8 77 107 A K 0 0 271 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.447 360.0 360.0 -60.7 360.0 10.5 -14.4 -8.9 78 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 79 43 B A >> 0 0 59 0, 0.0 4,-1.2 0, 0.0 3,-0.7 0.000 360.0 360.0 360.0 91.5 8.0 7.2 6.3 80 44 B P H 3> + 0 0 100 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.742 360.0 58.9 -66.7 -22.9 5.5 10.1 6.2 81 45 B Q H 3> S+ 0 0 56 2,-0.2 4,-1.3 1,-0.2 -14,-0.1 0.762 102.7 52.7 -76.9 -25.5 3.9 8.6 3.1 82 46 B L H <> S+ 0 0 1 -3,-0.7 4,-1.8 2,-0.2 -1,-0.2 0.833 109.1 48.8 -77.5 -33.7 3.1 5.4 5.0 83 47 B I H X S+ 0 0 75 -4,-1.2 4,-1.5 2,-0.2 -2,-0.2 0.858 113.0 47.1 -73.2 -36.4 1.4 7.4 7.8 84 48 B M H X S+ 0 0 41 -4,-1.5 4,-2.0 2,-0.2 -2,-0.2 0.804 109.4 55.4 -74.5 -30.0 -0.7 9.3 5.3 85 49 B L H X S+ 0 0 7 -4,-1.3 4,-1.4 2,-0.2 -2,-0.2 0.938 110.5 42.7 -67.6 -48.4 -1.6 6.2 3.4 86 50 B A H X S+ 0 0 0 -4,-1.8 4,-2.5 1,-0.2 5,-0.2 0.832 111.8 56.6 -67.2 -33.0 -3.0 4.4 6.5 87 51 B N H X S+ 0 0 76 -4,-1.5 4,-2.1 2,-0.2 -1,-0.2 0.928 108.4 45.2 -64.6 -46.1 -4.7 7.6 7.5 88 52 B V H X S+ 0 0 11 -4,-2.0 4,-0.6 2,-0.2 -1,-0.2 0.802 115.7 48.6 -67.8 -28.8 -6.6 7.9 4.3 89 53 B A H < S+ 0 0 22 -4,-1.4 3,-0.2 2,-0.2 -2,-0.2 0.844 118.3 38.7 -78.6 -35.5 -7.4 4.2 4.5 90 54 B L H < S+ 0 0 67 -4,-2.5 -2,-0.2 1,-0.2 -3,-0.2 0.666 144.7 0.8 -86.7 -19.4 -8.6 4.5 8.1 91 55 B T H < S+ 0 0 90 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 -0.357 70.1 150.6-170.0 78.5 -10.3 7.9 7.4 92 56 B G < 0 0 26 -4,-0.6 -4,-0.1 -3,-0.2 -3,-0.0 -0.336 360.0 360.0-111.2 50.7 -10.1 9.3 3.9 93 57 B E 0 0 233 -2,-0.1 -1,-0.0 0, 0.0 0, 0.0 -0.803 360.0 360.0-176.8 360.0 -13.3 11.3 3.9