==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 21-JUL-05 2D01 . COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALORHODOSPIRA HALOPHILA; . AUTHOR N.SHIMIZU,H.KAMIKUBO,Y.YAMAZAKI,Y.IMAMOTO,M.KATAOKA . 124 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6611.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 80 64.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 24.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A E 0 0 201 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-147.7 -18.4 22.7 -12.6 2 3 A H - 0 0 174 23,-0.1 2,-0.3 24,-0.0 23,-0.1 -0.643 360.0-178.5 -70.0 138.5 -21.5 20.6 -13.1 3 4 A V - 0 0 21 -2,-0.3 23,-0.4 11,-0.0 2,-0.3 -0.969 17.7-135.3-138.0 135.1 -20.6 16.9 -12.7 4 5 A A > - 0 0 61 -2,-0.3 3,-2.0 1,-0.1 6,-0.1 -0.669 25.8-100.4 -91.2 144.4 -23.2 14.1 -13.1 5 6 A F T 3 S+ 0 0 34 -2,-0.3 -1,-0.1 1,-0.3 117,-0.0 -0.314 110.5 20.4 -52.9 131.1 -23.8 11.1 -10.9 6 7 A G T 3 S+ 0 0 31 1,-0.2 -1,-0.3 101,-0.1 84,-0.0 0.520 83.8 163.1 84.0 6.8 -22.2 8.1 -12.4 7 8 A S X - 0 0 32 -3,-2.0 3,-1.7 1,-0.1 -1,-0.2 -0.318 45.5-125.3 -61.9 143.3 -19.8 10.0 -14.7 8 9 A E T 3 S+ 0 0 156 1,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.770 109.6 31.6 -61.2 -29.9 -16.9 7.9 -16.0 9 10 A D T >> S+ 0 0 74 1,-0.1 3,-1.8 2,-0.1 4,-1.4 -0.027 76.9 132.1-118.4 29.1 -14.3 10.3 -14.6 10 11 A I H <> + 0 0 0 -3,-1.7 4,-2.4 1,-0.3 5,-0.2 0.824 69.9 58.4 -52.8 -34.8 -16.1 11.6 -11.6 11 12 A E H 3> S+ 0 0 29 -4,-0.2 4,-1.2 1,-0.2 101,-0.4 0.781 102.2 54.8 -70.5 -24.2 -13.1 11.0 -9.3 12 13 A N H <> S+ 0 0 71 -3,-1.8 4,-0.6 2,-0.2 -1,-0.2 0.934 111.6 43.6 -71.5 -46.0 -11.0 13.4 -11.5 13 14 A T H >< S+ 0 0 29 -4,-1.4 3,-0.9 1,-0.2 -2,-0.2 0.909 114.3 47.9 -64.6 -46.6 -13.5 16.2 -11.1 14 15 A L H >< S+ 0 0 4 -4,-2.4 3,-1.6 1,-0.2 -1,-0.2 0.768 98.2 69.9 -72.2 -23.2 -14.1 15.7 -7.4 15 16 A A H 3< S+ 0 0 63 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.804 99.1 52.3 -58.6 -28.9 -10.3 15.6 -6.7 16 17 A K T << S+ 0 0 166 -3,-0.9 2,-0.3 -4,-0.6 -1,-0.3 0.454 93.8 103.8 -85.8 -3.5 -10.3 19.3 -7.6 17 18 A M < - 0 0 26 -3,-1.6 2,-0.1 -4,-0.1 -3,-0.0 -0.655 52.3-153.7 -98.7 139.1 -13.1 20.3 -5.2 18 19 A D > - 0 0 98 -2,-0.3 4,-2.9 1,-0.0 5,-0.2 -0.251 45.7 -86.1 -85.3-176.1 -13.2 22.1 -1.8 19 20 A D H > S+ 0 0 111 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.896 127.9 48.0 -59.3 -47.9 -16.0 21.7 0.9 20 21 A G H > S+ 0 0 49 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.881 113.4 47.9 -63.0 -41.1 -18.3 24.4 -0.6 21 22 A Q H >4 S+ 0 0 95 2,-0.2 3,-1.1 1,-0.2 4,-0.4 0.934 111.8 48.9 -66.1 -48.0 -17.9 22.9 -4.1 22 23 A L H >< S+ 0 0 3 -4,-2.9 3,-1.4 1,-0.3 22,-0.3 0.900 107.8 57.1 -56.1 -38.8 -18.6 19.4 -2.8 23 24 A D H 3< S+ 0 0 70 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.729 100.7 58.7 -63.9 -22.1 -21.6 20.8 -1.0 24 25 A G T << S+ 0 0 65 -3,-1.1 -1,-0.3 -4,-0.7 -2,-0.2 0.460 79.1 117.4 -89.7 -0.1 -22.9 22.1 -4.4 25 26 A L < - 0 0 14 -3,-1.4 19,-0.1 -4,-0.4 4,-0.1 -0.279 69.8-129.5 -66.3 152.6 -23.1 18.7 -6.0 26 27 A A S S+ 0 0 98 -23,-0.4 2,-0.3 2,-0.1 -1,-0.1 0.560 89.8 47.2 -74.7 -11.9 -26.5 17.4 -7.2 27 28 A F S S- 0 0 6 95,-0.1 18,-0.3 -23,-0.0 17,-0.3 -0.867 95.9 -89.6-130.2 160.6 -25.8 14.1 -5.4 28 29 A G E -A 121 0A 0 93,-2.8 93,-2.1 16,-0.3 2,-0.4 -0.482 41.6-168.8 -69.4 141.0 -24.6 12.9 -2.0 29 30 A A E +A 120 0A 0 91,-0.2 13,-2.3 -2,-0.2 2,-0.4 -0.978 10.1 175.0-139.4 124.5 -20.9 12.4 -1.7 30 31 A I E -AB 119 41A 0 89,-2.4 89,-2.8 -2,-0.4 2,-0.5 -0.969 15.8-153.2-124.4 138.0 -19.0 10.7 1.1 31 32 A Q E -AB 118 40A 14 9,-2.4 8,-3.2 -2,-0.4 9,-1.6 -0.982 17.6-175.3-113.4 130.2 -15.3 10.0 1.2 32 33 A L E -AB 117 38A 0 85,-3.0 85,-2.5 -2,-0.5 6,-0.2 -0.884 21.3-129.1-116.4 151.0 -14.1 7.1 3.3 33 34 A D > - 0 0 25 4,-2.2 3,-2.1 -2,-0.3 83,-0.2 -0.298 48.6 -86.7 -84.2-179.9 -10.7 5.8 4.2 34 35 A G T 3 S+ 0 0 19 1,-0.3 48,-0.1 81,-0.3 82,-0.1 0.768 130.9 52.5 -63.7 -22.4 -9.9 2.0 3.7 35 36 A D T 3 S- 0 0 117 2,-0.1 -1,-0.3 0, 0.0 44,-0.0 0.417 121.7-105.5 -91.7 1.3 -11.3 1.3 7.1 36 37 A G < + 0 0 0 -3,-2.1 25,-2.9 1,-0.3 26,-0.3 0.603 67.9 149.5 85.5 11.6 -14.6 3.1 6.4 37 38 A N B -E 60 0B 48 23,-0.2 -4,-2.2 24,-0.1 2,-0.5 -0.611 53.5-109.5 -77.4 141.2 -13.9 6.2 8.5 38 39 A I E +B 32 0A 3 21,-2.7 20,-2.6 18,-0.3 -6,-0.2 -0.611 42.2 166.9 -81.4 118.3 -15.6 9.3 7.1 39 40 A L E S+ 0 0 67 -8,-3.2 2,-0.3 -2,-0.5 -7,-0.2 0.793 71.8 9.7 -91.8 -42.3 -13.2 11.8 5.6 40 41 A Q E +B 31 0A 46 -9,-1.6 -9,-2.4 16,-0.1 -1,-0.3 -0.980 57.8 178.7-139.3 153.8 -15.7 14.0 3.8 41 42 A Y E -B 30 0A 14 -2,-0.3 -11,-0.2 -11,-0.2 16,-0.1 -0.885 21.6-142.5-158.3 116.8 -19.5 14.2 3.8 42 43 A N > - 0 0 0 -13,-2.3 4,-1.9 -2,-0.3 3,-0.3 -0.302 23.4-110.2 -89.9 172.1 -21.4 16.8 1.7 43 44 A A H > S+ 0 0 32 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.887 114.9 58.6 -64.4 -37.9 -24.5 18.9 2.3 44 45 A A H > S+ 0 0 18 -22,-0.3 4,-0.9 -17,-0.3 -16,-0.3 0.884 105.1 50.2 -61.6 -37.8 -26.5 16.9 -0.4 45 46 A E H >> S+ 0 0 2 -3,-0.3 4,-2.0 -18,-0.3 3,-1.1 0.939 108.4 51.6 -65.8 -45.7 -25.9 13.7 1.5 46 47 A G H 3X S+ 0 0 9 -4,-1.9 4,-2.3 1,-0.3 -1,-0.2 0.827 103.8 59.4 -59.8 -32.3 -27.1 15.2 4.8 47 48 A D H 3< S+ 0 0 128 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.761 110.7 42.3 -66.7 -25.1 -30.2 16.4 3.0 48 49 A I H << S+ 0 0 21 -3,-1.1 -2,-0.2 -4,-0.9 -1,-0.2 0.873 127.7 26.8 -82.4 -38.1 -31.0 12.7 2.2 49 50 A T H < S- 0 0 8 -4,-2.0 -2,-0.2 2,-0.2 -3,-0.2 0.552 94.0-122.4-110.1 -11.3 -30.1 11.2 5.6 50 51 A G < + 0 0 71 -4,-2.3 2,-0.3 1,-0.3 -4,-0.1 0.546 64.4 138.7 74.0 9.8 -30.6 13.9 8.2 51 52 A R - 0 0 36 -6,-0.2 -1,-0.3 -5,-0.2 -2,-0.2 -0.663 59.5-120.9 -83.1 143.4 -27.0 13.6 9.4 52 53 A D >> - 0 0 88 -2,-0.3 3,-1.6 1,-0.2 4,-1.5 -0.750 17.9-149.7 -81.7 115.9 -25.1 16.8 10.2 53 54 A P H 3> S+ 0 0 30 0, 0.0 4,-0.5 0, 0.0 -1,-0.2 0.781 94.0 58.7 -57.2 -30.1 -22.1 16.7 7.8 54 55 A K H 34 S+ 0 0 157 1,-0.2 -2,-0.0 2,-0.1 -12,-0.0 0.720 111.2 40.3 -72.4 -23.8 -20.0 18.6 10.3 55 56 A Q H <4 S+ 0 0 124 -3,-1.6 -1,-0.2 1,-0.1 4,-0.1 0.643 102.6 62.8-103.9 -16.3 -20.4 16.0 13.0 56 57 A V H >< S+ 0 0 11 -4,-1.5 3,-2.2 2,-0.1 -18,-0.3 0.650 74.2 114.4 -82.9 -12.5 -20.1 12.6 11.1 57 58 A I T 3< S+ 0 0 80 -4,-0.5 -18,-0.2 1,-0.3 3,-0.1 -0.396 82.4 19.2 -57.9 129.2 -16.6 13.4 10.1 58 59 A G T 3 S+ 0 0 56 -20,-2.6 -1,-0.3 1,-0.4 -19,-0.1 0.153 99.1 116.6 95.9 -17.6 -14.3 10.8 11.8 59 60 A K S < S- 0 0 95 -3,-2.2 -21,-2.7 -21,-0.1 2,-0.6 -0.373 74.1-103.5 -79.5 162.4 -17.0 8.3 12.5 60 61 A N B >> -E 37 0B 27 -23,-0.2 4,-2.2 1,-0.2 5,-1.9 -0.790 24.2-155.2 -92.0 122.9 -17.1 4.9 11.1 61 62 A F I 4>S+ 0 0 6 -25,-2.9 5,-2.9 -2,-0.6 8,-0.2 0.920 89.9 38.0 -61.3 -47.5 -19.6 4.6 8.3 62 63 A F I 45S+ 0 0 3 -26,-0.3 8,-0.2 3,-0.2 -1,-0.2 0.804 123.9 37.8 -80.4 -31.2 -20.3 0.9 8.5 63 64 A K I 45S+ 0 0 149 -27,-0.1 -2,-0.2 6,-0.1 -1,-0.1 0.905 133.6 7.7 -84.2 -44.8 -20.2 0.4 12.3 64 65 A D I <5S+ 0 0 85 -4,-2.2 -3,-0.2 2,-0.1 -2,-0.1 0.834 126.8 37.8-113.8 -42.4 -21.9 3.6 13.6 65 66 A V I < + 0 0 12 -5,-2.9 3,-2.2 -6,-0.3 4,-0.3 -0.545 61.6 161.5-132.7 63.0 -25.0 3.5 8.5 67 68 A P G > S+ 0 0 46 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 0.804 73.3 67.9 -61.1 -26.3 -25.5 -0.0 10.0 68 69 A C G 3 S+ 0 0 32 1,-0.3 26,-0.1 -3,-0.1 -6,-0.1 0.722 95.7 57.3 -65.0 -16.4 -27.9 -1.0 7.3 69 70 A T G < S+ 0 0 0 -3,-2.2 6,-2.2 -8,-0.2 2,-1.6 0.477 76.4 102.2 -91.8 -2.7 -25.0 -0.9 4.9 70 71 A D < + 0 0 95 -3,-1.8 -1,-0.1 -4,-0.3 3,-0.0 -0.650 62.9 99.1 -82.1 87.1 -23.1 -3.4 6.9 71 72 A S S > >S- 0 0 21 -2,-1.6 5,-2.7 1,-0.1 3,-1.3 -0.963 89.8 -99.8-163.8 159.2 -23.9 -6.3 4.5 72 73 A P T 3 >S+ 0 0 94 0, 0.0 5,-0.6 0, 0.0 6,-0.1 0.847 118.9 62.1 -59.1 -31.5 -22.3 -8.3 1.7 73 74 A E T 3 5S+ 0 0 113 3,-0.2 -3,-0.1 4,-0.1 -4,-0.0 0.651 126.2 4.4 -69.7 -19.3 -24.4 -6.1 -0.7 74 75 A F T <>5S+ 0 0 0 -3,-1.3 4,-2.3 -5,-0.2 3,-0.4 0.492 138.1 34.7-129.5 -75.8 -22.7 -2.8 0.3 75 76 A Y H >5S+ 0 0 87 -6,-2.2 4,-2.8 1,-0.2 5,-0.2 0.893 117.7 56.7 -53.2 -39.5 -19.9 -3.1 2.8 76 77 A G H > S- 0 0 62 1,-0.1 3,-0.7 2,-0.1 -2,-0.2 -0.314 97.9 -78.8 -72.0 154.2 -5.9 10.7 -3.3 114 115 A G T 3 S- 0 0 67 1,-0.2 -1,-0.1 -2,-0.0 3,-0.1 -0.222 105.7 -4.9 -63.3 134.9 -4.2 8.2 -1.0 115 116 A D T 3 S+ 0 0 91 1,-0.2 2,-0.3 -4,-0.1 -81,-0.3 0.908 101.7 131.3 51.3 52.5 -6.3 5.7 1.1 116 117 A S < + 0 0 6 -3,-0.7 -5,-2.3 -5,-0.2 2,-0.4 -1.000 32.8 179.8-141.5 137.3 -9.6 7.3 -0.1 117 118 A Y E -AD 32 110A 22 -85,-2.5 -85,-3.0 -2,-0.3 2,-0.3 -0.998 19.6-136.2-139.9 130.3 -12.8 5.9 -1.5 118 119 A W E -AD 31 109A 4 -9,-3.1 -9,-2.1 -2,-0.4 2,-0.5 -0.683 10.1-167.2 -90.4 142.9 -16.0 7.7 -2.7 119 120 A V E -AD 30 108A 0 -89,-2.8 -89,-2.4 -2,-0.3 2,-0.4 -0.986 14.0-169.6-121.9 115.4 -19.5 6.7 -1.9 120 121 A F E -AD 29 107A 0 -13,-3.0 -13,-2.3 -2,-0.5 2,-0.4 -0.863 4.2-172.4-108.3 143.8 -22.0 8.6 -4.1 121 122 A V E +AD 28 106A 0 -93,-2.1 -93,-2.8 -2,-0.4 2,-0.3 -0.995 11.0 171.9-139.1 137.2 -25.7 8.5 -3.4 122 123 A K E - D 0 105A 81 -17,-2.2 -17,-2.5 -2,-0.4 2,-0.1 -0.990 36.1-104.5-140.2 155.2 -28.9 9.8 -5.2 123 124 A R E D 0 104A 139 -2,-0.3 -19,-0.3 -19,-0.2 -21,-0.0 -0.421 360.0 360.0 -69.7 148.0 -32.6 9.3 -4.6 124 125 A V 0 0 98 -21,-1.8 -21,-0.2 -2,-0.1 -1,-0.0 -0.905 360.0 360.0-126.7 360.0 -34.5 6.9 -6.9