==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 08-AUG-05 2D0S . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOPHILUS THERMOLUTEOLUS; . AUTHOR S.NAKAMURA,S.I.ICHIKI,H.TAKASHIMA,S.UCHIYAMA,J.HASEGAWA, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5153.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 34.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D > 0 0 69 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0-170.3 11.6 4.3 -0.3 2 2 A E H > + 0 0 104 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.847 360.0 51.4 -66.0 -39.1 14.5 3.3 1.9 3 3 A A H > S+ 0 0 74 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.863 111.2 49.2 -69.8 -36.2 16.8 2.1 -0.9 4 4 A L H > S+ 0 0 27 2,-0.2 4,-1.9 1,-0.2 6,-0.2 0.914 108.0 52.9 -66.3 -43.6 16.2 5.4 -2.8 5 5 A A H <>S+ 0 0 0 -4,-2.0 5,-1.9 1,-0.2 6,-0.4 0.937 113.2 44.9 -57.7 -46.5 17.0 7.5 0.3 6 6 A K H ><5S+ 0 0 151 -4,-2.1 3,-1.7 1,-0.2 -2,-0.2 0.912 109.3 54.5 -66.8 -40.6 20.2 5.7 0.7 7 7 A A H 3<5S+ 0 0 75 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.792 107.2 53.7 -63.1 -28.0 21.1 5.9 -3.0 8 8 A K T 3<5S- 0 0 77 -4,-1.9 -1,-0.3 -3,-0.2 -2,-0.2 0.298 118.6-109.3 -94.1 14.9 20.6 9.7 -2.8 9 9 A G T X 5S+ 0 0 48 -3,-1.7 3,-1.4 -5,-0.1 4,-0.4 0.436 80.4 127.0 79.6 -0.5 23.0 10.2 0.1 10 10 A C G >>< + 0 0 23 -5,-1.9 3,-1.2 1,-0.2 4,-0.7 0.765 61.5 62.9 -55.7 -35.7 20.4 11.0 2.6 11 11 A M G 34 S+ 0 0 43 -6,-0.4 -1,-0.2 1,-0.3 -5,-0.1 0.397 83.9 76.2 -86.9 10.8 21.4 8.4 5.2 12 12 A A G <4 S+ 0 0 76 -3,-1.4 9,-0.3 1,-0.1 -1,-0.3 0.822 114.5 21.2 -75.8 -38.9 24.7 10.0 5.8 13 13 A C T <4 S+ 0 0 50 -3,-1.2 9,-3.0 -4,-0.4 7,-0.4 0.431 126.0 47.6-107.9 -8.6 23.0 12.6 7.8 14 14 A H < - 0 0 27 -4,-0.7 2,-0.3 7,-0.2 -1,-0.2 -1.000 55.7-172.3-137.2 144.0 19.7 11.0 8.8 15 15 A A - 0 0 20 3,-0.8 10,-2.1 -2,-0.3 11,-0.4 -0.881 33.2-117.5-129.3 163.1 18.7 7.6 10.3 16 16 A I S S+ 0 0 33 -2,-0.3 10,-1.9 8,-0.2 11,-0.2 0.950 107.4 15.6 -59.6 -59.4 15.3 6.1 10.8 17 17 A D S S+ 0 0 114 8,-0.1 2,-0.3 7,-0.1 -1,-0.2 0.374 120.6 44.9-106.1 5.1 15.5 5.8 14.7 18 18 A K S S- 0 0 127 5,-0.1 -3,-0.8 0, 0.0 2,-0.3 -0.949 77.0-102.9-146.6 160.7 18.3 8.1 15.9 19 19 A K + 0 0 174 -2,-0.3 2,-0.2 -5,-0.1 -5,-0.1 -0.674 39.6 155.7 -90.0 142.9 19.8 11.5 15.4 20 20 A L S S- 0 0 76 2,-1.8 -7,-0.1 -7,-0.4 -6,-0.1 -0.224 77.8 -39.7-129.4-137.4 22.9 12.2 13.4 21 21 A V S S+ 0 0 96 -9,-0.3 -7,-0.2 -2,-0.2 34,-0.1 0.904 133.9 34.3 -59.8 -47.6 23.5 15.6 11.8 22 22 A G S S- 0 0 16 -9,-3.0 -2,-1.8 1,-0.2 -7,-0.3 -0.612 105.8 -73.9-104.9 173.9 19.8 15.9 10.8 23 23 A P - 0 0 22 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 -0.255 53.0 -98.4 -65.3 157.5 16.7 14.8 12.6 24 24 A S > - 0 0 7 -10,-0.1 4,-1.6 1,-0.1 -8,-0.2 -0.335 29.5-121.2 -66.7 154.2 15.7 11.1 12.7 25 25 A Y H > S+ 0 0 13 -10,-2.1 4,-2.7 1,-0.2 -9,-0.2 0.809 114.3 59.9 -69.4 -29.3 13.0 10.2 10.1 26 26 A K H > S+ 0 0 64 -10,-1.9 4,-1.3 -11,-0.4 -1,-0.2 0.888 105.5 47.7 -67.3 -33.8 10.8 9.1 12.9 27 27 A D H > S+ 0 0 71 -11,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.854 110.6 52.1 -72.8 -33.1 10.9 12.6 14.4 28 28 A V H >X S+ 0 0 20 -4,-1.6 4,-2.1 1,-0.2 3,-0.5 0.970 109.4 49.0 -67.2 -49.2 10.2 14.1 11.0 29 29 A A H 3< S+ 0 0 8 -4,-2.7 -1,-0.2 46,-0.2 -2,-0.2 0.803 111.2 52.0 -56.6 -33.1 7.1 11.8 10.7 30 30 A K H 3< S+ 0 0 156 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.815 112.6 44.3 -74.5 -29.3 6.0 12.9 14.2 31 31 A K H << S+ 0 0 109 -4,-1.7 2,-0.2 -3,-0.5 -2,-0.2 0.821 118.0 35.0 -85.2 -31.8 6.2 16.6 13.3 32 32 A Y < - 0 0 30 -4,-2.1 2,-0.3 -5,-0.1 5,-0.0 -0.720 59.8-152.8-118.1 175.0 4.5 16.5 9.9 33 33 A T > - 0 0 74 -2,-0.2 3,-2.8 44,-0.0 4,-0.1 -0.803 48.0 -85.4-132.7-179.6 1.8 14.8 8.0 34 34 A E G > S+ 0 0 142 1,-0.3 3,-1.2 -2,-0.3 43,-0.0 0.700 121.7 74.4 -59.2 -14.0 1.1 14.0 4.3 35 35 A A G 3 S+ 0 0 78 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.759 94.2 52.2 -65.8 -29.5 -0.4 17.6 4.3 36 36 A D G <> S+ 0 0 43 -3,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.203 72.6 109.1 -92.8 7.5 3.1 18.9 4.4 37 37 A V H <> S+ 0 0 3 -3,-1.2 4,-2.2 1,-0.2 5,-0.2 0.896 77.8 50.4 -54.1 -47.4 4.7 17.0 1.5 38 38 A P H > S+ 0 0 88 0, 0.0 4,-1.5 0, 0.0 -1,-0.2 0.876 112.0 49.7 -60.8 -39.1 5.1 20.0 -0.9 39 39 A K H > S+ 0 0 122 -3,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.921 111.8 46.6 -63.7 -45.2 6.8 22.1 1.8 40 40 A L H X S+ 0 0 17 -4,-2.1 4,-2.0 1,-0.2 -1,-0.2 0.856 107.6 56.7 -66.1 -42.0 9.3 19.3 2.8 41 41 A V H X S+ 0 0 6 -4,-2.2 4,-2.3 -5,-0.2 -1,-0.2 0.914 107.4 48.4 -56.3 -45.0 10.2 18.7 -0.8 42 42 A E H X S+ 0 0 67 -4,-1.5 4,-3.4 1,-0.2 5,-0.4 0.893 109.5 54.3 -60.9 -41.2 11.2 22.4 -1.3 43 43 A K H X S+ 0 0 56 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.875 110.4 44.6 -59.8 -41.8 13.2 22.2 1.9 44 44 A V H < S+ 0 0 29 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.955 117.8 45.9 -69.4 -46.5 15.2 19.2 0.7 45 45 A K H < S+ 0 0 61 -4,-2.3 15,-2.7 14,-0.2 -2,-0.2 0.953 124.5 29.3 -59.2 -58.8 15.7 20.8 -2.8 46 46 A K H < S- 0 0 145 -4,-3.4 -1,-0.2 13,-0.2 -3,-0.2 0.647 100.4-147.4 -80.1 -16.8 16.7 24.3 -1.6 47 47 A G < + 0 0 13 -4,-1.6 2,-0.2 -5,-0.4 -1,-0.2 -0.147 28.9 151.9 78.3-173.5 18.3 23.3 1.6 48 48 A G B -A 57 0A 29 9,-2.7 9,-2.3 -4,-0.1 2,-0.2 -0.775 28.0-113.9 137.3 175.7 18.3 25.4 4.8 49 49 A A + 0 0 53 7,-0.2 6,-0.0 -2,-0.2 0, 0.0 -0.772 61.5 66.3-130.7-176.2 18.4 25.6 8.5 50 50 A G S S+ 0 0 59 3,-2.6 -1,-0.1 -2,-0.2 5,-0.0 0.026 72.0 88.8 91.5 -21.4 16.5 26.6 11.7 51 51 A V S S+ 0 0 70 1,-0.1 -2,-0.1 2,-0.1 -1,-0.0 0.911 113.9 10.0 -72.2 -41.9 13.6 24.2 12.1 52 52 A W S S- 0 0 111 1,-0.4 -1,-0.1 3,-0.2 3,-0.0 0.402 134.0 -41.3-112.3 -9.6 15.7 21.7 14.1 53 53 A G - 0 0 28 1,-0.1 -3,-2.6 2,-0.0 -1,-0.4 -0.967 67.6 -72.1 166.1-176.0 18.9 23.6 14.7 54 54 A P S S+ 0 0 124 0, 0.0 -1,-0.1 0, 0.0 -5,-0.0 0.547 92.8 96.1 -86.9 -14.6 21.5 26.0 13.3 55 55 A V S S- 0 0 85 -34,-0.1 -5,-0.2 -3,-0.0 -3,-0.2 -0.724 72.5-131.8 -84.0 122.6 23.3 23.5 10.9 56 56 A P - 0 0 86 0, 0.0 -7,-0.2 0, 0.0 -9,-0.0 -0.469 3.4-132.1 -76.0 152.0 21.9 23.7 7.3 57 57 A M B -A 48 0A 49 -9,-2.3 -9,-2.7 -2,-0.1 -35,-0.0 -0.869 38.3-117.0 -95.9 130.6 20.9 20.8 5.2 58 58 A P - 0 0 77 0, 0.0 -11,-0.3 0, 0.0 -1,-0.1 -0.239 29.7-100.0 -67.5 156.1 22.6 21.4 1.8 59 59 A P - 0 0 77 0, 0.0 -13,-0.2 0, 0.0 -14,-0.2 -0.252 21.6-142.7 -66.1 165.2 20.5 21.9 -1.3 60 60 A H > + 0 0 43 -15,-2.7 3,-1.1 -16,-0.2 -14,-0.1 -0.588 32.5 160.7-128.7 72.3 20.0 19.0 -3.7 61 61 A P T 3 S+ 0 0 110 0, 0.0 -1,-0.1 0, 0.0 -16,-0.1 0.701 74.8 45.7 -68.5 -15.5 20.1 20.7 -7.1 62 62 A Q T 3 S+ 0 0 190 -3,-0.1 2,-0.5 2,-0.1 -17,-0.0 0.343 88.0 93.5-113.8 11.2 20.8 17.5 -9.0 63 63 A V S < S- 0 0 30 -3,-1.1 2,-0.1 -18,-0.1 -3,-0.1 -0.869 84.7-108.4-106.5 128.9 18.3 15.0 -7.4 64 64 A A >> - 0 0 54 -2,-0.5 4,-2.5 1,-0.1 3,-0.8 -0.399 15.8-133.0 -60.4 133.2 15.0 14.8 -9.3 65 65 A E H 3> S+ 0 0 95 1,-0.3 4,-2.7 2,-0.2 5,-0.2 0.853 108.4 60.5 -52.4 -32.0 12.2 16.4 -7.6 66 66 A A H 3> S+ 0 0 68 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.866 106.9 45.7 -64.3 -36.7 10.2 13.2 -8.3 67 67 A D H <> S+ 0 0 47 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.922 110.0 52.6 -73.1 -43.7 12.7 11.2 -6.3 68 68 A I H X S+ 0 0 4 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.937 109.1 50.0 -55.7 -47.9 12.8 13.6 -3.5 69 69 A E H X S+ 0 0 72 -4,-2.7 4,-2.7 1,-0.2 5,-0.2 0.917 108.1 53.6 -61.3 -43.6 9.0 13.4 -3.2 70 70 A K H X S+ 0 0 106 -4,-1.7 4,-1.6 2,-0.2 -1,-0.2 0.905 111.1 45.7 -48.3 -49.5 9.1 9.6 -3.2 71 71 A I H X S+ 0 0 11 -4,-2.1 4,-2.9 1,-0.2 3,-0.2 0.978 112.9 51.3 -66.7 -42.3 11.6 9.7 -0.3 72 72 A V H X S+ 0 0 12 -4,-2.8 4,-1.9 1,-0.3 -2,-0.2 0.901 107.6 49.8 -64.7 -41.2 9.6 12.2 1.6 73 73 A R H < S+ 0 0 120 -4,-2.7 4,-0.4 1,-0.2 -1,-0.3 0.894 113.0 49.5 -66.4 -31.9 6.2 10.3 1.3 74 74 A W H >< S+ 0 0 47 -4,-1.6 3,-1.8 -5,-0.2 4,-0.4 0.946 105.5 55.2 -70.2 -51.0 8.1 7.3 2.6 75 75 A V H >< S+ 0 0 8 -4,-2.9 3,-1.6 1,-0.3 -46,-0.2 0.897 103.7 58.2 -41.5 -43.1 9.7 9.1 5.6 76 76 A L T 3< S+ 0 0 16 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.655 96.8 59.9 -74.6 -14.2 6.2 10.2 6.6 77 77 A T T < S+ 0 0 93 -3,-1.8 2,-1.8 -4,-0.4 -1,-0.3 0.522 75.4 106.3 -86.2 -7.6 4.9 6.6 7.0 78 78 A L < 0 0 27 -3,-1.6 -49,-0.1 -4,-0.4 -1,-0.1 -0.557 360.0 360.0 -77.0 83.4 7.5 5.6 9.7 79 79 A K 0 0 208 -2,-1.8 -2,-0.0 -50,-0.1 -53,-0.0 -0.550 360.0 360.0-111.8 360.0 5.4 5.5 12.8