==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS 20-SEP-99 1D1R . COMPND 2 MOLECULE: HYPOTHETICAL 11.4 KD PROTEIN YCIH IN PYRF-OSMB . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.R.CORT,E.V.KOONIN,P.A.BASH,M.A.KENNEDY . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6810.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 63.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 13.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 22.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 29 A K 0 0 277 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 66.4 -8.0 19.0 4.6 2 30 A G - 0 0 60 72,-0.0 3,-0.1 3,-0.0 72,-0.0 0.110 360.0-156.6-166.6 -62.7 -7.6 15.2 4.4 3 31 A D + 0 0 144 1,-0.1 2,-0.1 25,-0.0 71,-0.0 0.996 66.3 65.7 65.8 73.3 -7.1 13.3 7.7 4 32 A G - 0 0 11 24,-0.1 71,-1.1 22,-0.0 2,-0.4 -0.313 55.9-161.5 147.7 126.5 -5.4 10.1 6.5 5 33 A V E -a 75 0A 72 20,-0.7 2,-0.4 69,-0.1 22,-0.2 -0.968 8.1-155.5-133.8 121.3 -2.0 9.3 4.9 6 34 A V E -a 76 0A 10 69,-1.7 71,-1.1 -2,-0.4 2,-0.4 -0.781 11.0-172.2 -96.4 135.8 -1.3 6.0 3.0 7 35 A R E -B 24 0B 125 17,-0.8 17,-1.0 -2,-0.4 2,-0.5 -0.976 5.7-164.5-130.1 124.4 2.4 4.8 2.8 8 36 A I E +B 23 0B 1 -2,-0.4 71,-0.9 15,-0.1 2,-0.3 -0.912 12.4 179.0-110.1 126.1 3.5 1.9 0.7 9 37 A Q E -B 22 0B 78 13,-1.1 13,-1.3 -2,-0.5 2,-0.5 -0.843 18.8-147.7-121.7 160.6 7.0 0.4 1.3 10 38 A R E -B 21 0B 113 -2,-0.3 2,-1.6 11,-0.2 11,-0.2 -0.884 3.5-165.3-131.9 104.8 8.8 -2.5 -0.3 11 39 A Q + 0 0 126 9,-0.6 9,-0.1 -2,-0.5 10,-0.1 -0.582 25.7 170.5 -88.3 80.7 11.2 -4.6 1.9 12 40 A T - 0 0 52 -2,-1.6 7,-0.2 7,-0.2 3,-0.1 -0.071 32.7-141.6 -77.8-173.2 13.1 -6.4 -0.8 13 41 A S - 0 0 115 5,-0.4 2,-0.3 1,-0.2 3,-0.1 0.103 69.9 -30.5-139.1 22.7 16.2 -8.5 -0.2 14 42 A G S S- 0 0 55 1,-0.2 3,-0.2 4,-0.1 -1,-0.2 -0.994 93.5 -46.0 158.1-157.0 18.4 -7.8 -3.3 15 43 A R S S- 0 0 240 -2,-0.3 2,-0.4 1,-0.2 -1,-0.2 0.988 114.9 -17.8 -71.2 -74.1 18.0 -6.9 -7.0 16 44 A K S S+ 0 0 209 -3,-0.1 -1,-0.2 1,-0.1 3,-0.0 -0.933 101.0 86.5-139.5 115.8 15.4 -9.4 -8.2 17 45 A G S S+ 0 0 83 -2,-0.4 2,-0.2 -3,-0.2 -1,-0.1 0.210 95.4 0.9-173.0 -39.8 14.4 -12.5 -6.3 18 46 A K + 0 0 158 2,-0.0 -5,-0.4 -3,-0.0 2,-0.3 -0.697 60.0 176.8-168.4 110.5 11.7 -11.8 -3.6 19 47 A G - 0 0 16 -2,-0.2 2,-0.3 -7,-0.2 40,-0.2 -0.895 9.7-160.7-119.0 149.6 10.0 -8.5 -2.8 20 48 A V - 0 0 42 -2,-0.3 -9,-0.6 38,-0.1 2,-0.4 -0.894 6.4-147.9-126.4 158.1 7.2 -7.9 -0.3 21 49 A C E -BC 10 57B 5 36,-1.0 36,-2.4 -2,-0.3 2,-0.5 -0.975 9.4-169.9-129.4 124.2 4.7 -5.0 0.1 22 50 A L E -BC 9 56B 75 -13,-1.3 -13,-1.1 -2,-0.4 2,-0.6 -0.940 5.0-162.1-115.3 124.3 3.3 -3.9 3.5 23 51 A I E +BC 8 55B 5 32,-2.3 32,-2.2 -2,-0.5 2,-0.3 -0.894 31.7 131.6-107.3 119.3 0.4 -1.4 3.6 24 52 A T E +B 7 0B 46 -17,-1.0 -17,-0.8 -2,-0.6 30,-0.1 -0.993 36.8 63.1-158.9 158.7 -0.1 0.5 6.9 25 53 A G + 0 0 37 28,-0.4 2,-0.8 -2,-0.3 -20,-0.7 0.086 53.4 145.9 109.1 -23.9 -0.7 4.0 8.2 26 54 A V - 0 0 11 27,-0.2 2,-1.8 -19,-0.1 -1,-0.3 -0.218 37.8-157.3 -49.0 94.2 -4.1 4.5 6.4 27 55 A D + 0 0 111 -2,-0.8 2,-0.3 -22,-0.2 -1,-0.1 -0.551 46.3 114.9 -79.8 85.9 -5.6 6.7 9.1 28 56 A L S S- 0 0 44 -2,-1.8 5,-0.2 1,-0.1 -24,-0.1 -0.945 75.4 -60.0-146.2 167.5 -9.3 6.0 8.3 29 57 A D > - 0 0 129 -2,-0.3 4,-2.0 1,-0.1 -1,-0.1 -0.066 52.1-118.1 -45.5 150.5 -12.4 4.4 9.9 30 58 A D H > S+ 0 0 125 1,-0.2 4,-1.7 2,-0.2 3,-0.3 0.975 115.3 47.4 -60.3 -53.4 -11.8 0.7 10.6 31 59 A A H > S+ 0 0 60 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.904 109.6 55.3 -56.1 -39.0 -14.6 -0.4 8.3 32 60 A E H > S+ 0 0 77 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.913 102.1 56.8 -62.4 -39.4 -13.2 2.0 5.6 33 61 A L H X S+ 0 0 16 -4,-2.0 4,-2.1 -3,-0.3 5,-0.3 0.930 103.4 53.4 -58.9 -43.0 -9.8 0.3 5.9 34 62 A T H X S+ 0 0 83 -4,-1.7 4,-1.6 1,-0.2 -1,-0.2 0.871 107.4 52.2 -61.4 -33.4 -11.4 -3.1 5.0 35 63 A K H X S+ 0 0 142 -4,-1.4 4,-1.6 -3,-0.2 -1,-0.2 0.878 108.3 51.3 -71.6 -34.9 -12.9 -1.5 1.9 36 64 A L H >X S+ 0 0 25 -4,-1.9 4,-2.0 2,-0.2 3,-0.7 0.993 113.3 41.2 -66.0 -59.8 -9.6 -0.2 0.8 37 65 A A H 3X S+ 0 0 1 -4,-2.1 4,-2.2 1,-0.3 11,-0.3 0.875 113.2 57.2 -57.0 -34.2 -7.6 -3.4 1.0 38 66 A A H 3< S+ 0 0 44 -4,-1.6 -1,-0.3 -5,-0.3 -2,-0.2 0.874 105.1 51.0 -66.4 -33.8 -10.7 -5.2 -0.5 39 67 A E H XX S+ 0 0 120 -4,-1.6 3,-1.1 -3,-0.7 4,-1.0 0.937 110.4 47.4 -70.2 -44.3 -10.5 -2.9 -3.5 40 68 A L H 3< S+ 0 0 22 -4,-2.0 3,-0.3 1,-0.3 -2,-0.2 0.915 111.3 51.0 -64.0 -39.9 -6.8 -3.6 -4.2 41 69 A K T 3< S+ 0 0 100 -4,-2.2 -1,-0.3 -5,-0.2 3,-0.2 0.533 97.7 74.1 -75.2 -2.1 -7.3 -7.4 -3.8 42 70 A K T <4 S- 0 0 171 -3,-1.1 -1,-0.2 -4,-0.2 -2,-0.2 0.950 120.3 -1.6 -76.8 -49.2 -10.2 -7.1 -6.3 43 71 A K S < S+ 0 0 180 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.1 -0.422 104.9 93.8-140.5 64.6 -8.1 -6.6 -9.4 44 72 A C S S- 0 0 55 -3,-0.2 -3,-0.1 4,-0.0 -1,-0.1 0.504 96.1 -94.2-128.6 -15.4 -4.4 -6.6 -8.5 45 73 A G S S+ 0 0 65 -4,-0.2 -2,-0.1 -5,-0.1 -3,-0.1 0.850 99.4 33.4 96.3 78.3 -3.3 -10.3 -8.9 46 74 A C S S- 0 0 84 -5,-0.2 2,-0.6 -4,-0.1 12,-0.1 0.423 88.5-106.9 112.0 110.6 -3.6 -12.2 -5.6 47 75 A G - 0 0 54 -5,-0.1 2,-0.2 10,-0.1 -6,-0.1 -0.495 38.4-151.8 -67.1 111.6 -6.2 -11.4 -3.0 48 76 A G - 0 0 8 -2,-0.6 2,-0.2 -11,-0.3 9,-0.2 -0.568 6.9-143.0 -84.1 148.9 -4.3 -9.7 -0.2 49 77 A A B -D 56 0B 62 7,-0.6 7,-1.9 -2,-0.2 2,-0.2 -0.642 10.1-122.2-107.2 168.3 -5.6 -10.0 3.4 50 78 A V - 0 0 55 5,-0.2 5,-0.3 -2,-0.2 2,-0.2 -0.694 15.1-165.9-106.5 162.3 -5.7 -7.4 6.2 51 79 A K - 0 0 130 -2,-0.2 4,-0.1 3,-0.0 3,-0.1 -0.582 66.9 -55.8-149.3 82.3 -4.1 -7.7 9.7 52 80 A D S S- 0 0 166 1,-0.3 3,-0.1 -2,-0.2 -22,-0.0 0.961 125.5 -26.3 46.1 66.9 -5.2 -5.1 12.3 53 81 A G S S+ 0 0 24 1,-0.1 2,-0.5 -23,-0.1 -28,-0.4 0.620 125.3 106.0 74.8 8.9 -4.3 -2.1 10.1 54 82 A V - 0 0 52 -30,-0.1 2,-0.6 -29,-0.1 -30,-0.2 -0.845 49.4-173.6-124.6 98.6 -1.7 -4.3 8.4 55 83 A I E -C 23 0B 3 -32,-2.2 -32,-2.3 -2,-0.5 2,-0.6 -0.784 14.8-146.7 -93.1 124.4 -2.6 -5.4 4.8 56 84 A E E +CD 22 49B 97 -7,-1.9 -7,-0.6 -2,-0.6 2,-0.5 -0.771 19.2 179.5 -91.9 124.6 -0.1 -7.9 3.3 57 85 A I E -C 21 0B 33 -36,-2.4 -36,-1.0 -2,-0.6 2,-1.0 -0.948 18.0-151.3-127.8 115.1 0.3 -7.5 -0.5 58 86 A Q + 0 0 153 -2,-0.5 2,-0.2 -38,-0.2 -38,-0.1 -0.712 60.5 78.8 -86.7 105.5 2.7 -9.8 -2.4 59 87 A G S S- 0 0 31 -2,-1.0 2,-1.1 -40,-0.2 -2,-0.1 -0.633 71.8-125.1 162.2 137.7 3.9 -7.8 -5.4 60 88 A D + 0 0 87 -2,-0.2 3,-0.2 1,-0.2 -50,-0.1 -0.458 65.1 124.4 -97.0 64.4 6.5 -5.1 -6.2 61 89 A K >> + 0 0 125 -2,-1.1 4,-2.0 1,-0.2 3,-0.9 -0.103 14.7 143.0-112.1 36.5 4.1 -2.6 -7.9 62 90 A R H 3> S+ 0 0 41 1,-0.3 4,-2.1 2,-0.2 5,-0.2 0.867 70.9 63.2 -44.3 -35.8 4.9 0.4 -5.6 63 91 A D H 3> S+ 0 0 146 1,-0.2 4,-1.1 -3,-0.2 -1,-0.3 0.967 105.1 42.2 -56.4 -52.3 4.5 2.4 -8.8 64 92 A L H <> S+ 0 0 91 -3,-0.9 4,-2.1 1,-0.2 5,-0.3 0.822 108.2 63.8 -65.4 -26.9 0.8 1.4 -9.2 65 93 A L H X S+ 0 0 16 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.949 99.7 50.4 -63.2 -46.1 0.4 1.9 -5.4 66 94 A K H X S+ 0 0 89 -4,-2.1 4,-1.9 -3,-0.2 -1,-0.2 0.850 111.4 52.3 -61.7 -30.0 1.2 5.7 -5.7 67 95 A S H >X S+ 0 0 76 -4,-1.1 4,-1.3 -5,-0.2 3,-0.6 0.996 108.5 44.0 -69.8 -68.7 -1.5 5.8 -8.5 68 96 A L H 3X S+ 0 0 27 -4,-2.1 4,-0.7 1,-0.3 3,-0.5 0.865 113.9 56.3 -44.9 -35.4 -4.4 4.2 -6.7 69 97 A L H >X>S+ 0 0 1 -4,-2.0 3,-1.3 -5,-0.3 4,-1.1 0.958 104.5 48.8 -64.6 -47.9 -3.4 6.4 -3.7 70 98 A E H <<5S+ 0 0 134 -4,-1.9 -1,-0.2 -3,-0.6 -2,-0.2 0.648 97.2 76.2 -67.2 -9.3 -3.7 9.6 -5.8 71 99 A A H 3<5S+ 0 0 78 -4,-1.3 -1,-0.3 -3,-0.5 -2,-0.2 0.868 98.9 40.8 -70.4 -33.2 -7.1 8.3 -6.9 72 100 A K H <<5S- 0 0 79 -3,-1.3 -1,-0.2 -4,-0.7 -2,-0.2 0.775 109.7-123.7 -85.0 -25.9 -8.6 9.2 -3.5 73 101 A G T <5 + 0 0 63 -4,-1.1 -3,-0.2 1,-0.2 -2,-0.1 0.655 65.8 133.5 92.5 16.0 -6.7 12.6 -3.3 74 102 A M < - 0 0 43 -5,-0.9 -1,-0.2 1,-0.1 2,-0.2 -0.202 61.6 -86.9 -87.7-174.4 -5.1 11.7 0.0 75 103 A K E -a 5 0A 156 -71,-1.1 -69,-1.7 -3,-0.1 2,-0.3 -0.518 39.8-159.2 -91.4 163.5 -1.4 12.1 1.0 76 104 A V E -a 6 0A 44 -71,-0.2 -69,-0.2 -2,-0.2 2,-0.1 -0.958 17.2-152.6-139.8 159.0 1.3 9.5 0.3 77 105 A K - 0 0 146 -71,-1.1 2,-0.4 -2,-0.3 -70,-0.1 -0.433 14.0-161.7-130.3 61.4 4.8 8.7 1.7 78 106 A L - 0 0 81 -71,-0.1 -69,-0.1 -2,-0.1 -71,-0.1 -0.168 21.0-149.3 -44.9 98.5 6.6 7.0 -1.2 79 107 A A + 0 0 32 -71,-0.9 2,-0.3 -2,-0.4 -1,-0.0 -0.234 33.6 137.1 -69.1 164.9 9.4 5.4 1.0 80 108 A G + 0 0 67 -71,-0.0 2,-0.2 2,-0.0 -1,-0.0 -0.975 17.6 168.8 178.2-168.7 12.8 4.9 -0.5 81 109 A G - 0 0 82 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.759 37.3 -96.7 151.7 161.7 16.6 5.2 0.2 82 110 A L 0 0 181 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.916 360.0 360.0-110.8 124.4 20.0 4.2 -1.2 83 111 A E 0 0 237 -2,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.915 360.0 360.0-140.2 360.0 21.7 1.1 0.3