==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 01-SEP-05 2D1V . COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN YYCF; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; . AUTHOR T.OKAJIMA,A.OKADA,T.WATANABE,K.YAMAMOTO,K.TANIZAWA,R.UTSUMI . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6446.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 30.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 131 A S 0 0 161 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.7 -5.8 -0.9 25.3 2 132 A S + 0 0 59 1,-0.0 13,-0.6 11,-0.0 3,-0.1 -0.420 360.0 141.6-162.4 77.1 -2.0 -0.9 26.0 3 133 A N S S- 0 0 97 1,-0.3 12,-0.4 11,-0.1 13,-0.3 0.936 73.6 -33.3 -86.1 -51.7 0.1 -3.8 24.7 4 134 A E - 0 0 78 9,-0.2 2,-0.4 10,-0.1 -1,-0.3 -0.894 45.9-142.8-173.8 141.3 3.3 -1.9 23.7 5 135 A I E -A 12 0A 40 7,-3.1 7,-3.6 -2,-0.3 2,-0.4 -0.872 14.7-155.0-110.1 140.6 4.6 1.4 22.3 6 136 A H E +A 11 0A 113 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.937 16.7 171.0-116.7 138.1 7.5 1.7 19.9 7 137 A I E > S-A 10 0A 5 3,-2.7 3,-1.6 -2,-0.4 2,-0.2 -0.761 70.3 -53.0-146.5 91.5 9.7 4.8 19.5 8 138 A G T 3 S- 0 0 52 -2,-0.3 -1,-0.3 1,-0.3 80,-0.0 -0.558 120.3 -24.1 71.5-139.8 12.7 4.2 17.3 9 139 A S T 3 S+ 0 0 53 -2,-0.2 13,-3.0 -3,-0.1 14,-0.7 0.268 120.0 103.9 -86.6 11.5 14.4 1.1 18.6 10 140 A L E < -AB 7 21A 0 -3,-1.6 -3,-2.7 11,-0.3 2,-0.4 -0.836 54.4-166.2 -98.2 125.2 12.9 1.8 22.0 11 141 A V E -AB 6 20A 11 9,-3.7 9,-2.2 -2,-0.5 2,-0.5 -0.930 7.7-163.2-118.1 135.3 10.0 -0.4 23.1 12 142 A I E -AB 5 19A 0 -7,-3.6 -7,-3.1 -2,-0.4 7,-0.2 -0.963 3.7-171.2-116.8 123.7 7.5 0.2 26.0 13 143 A F E >> - B 0 18A 57 5,-2.8 5,-1.5 -2,-0.5 4,-1.4 -0.792 2.8-176.6-113.8 86.4 5.3 -2.7 27.3 14 144 A P T 45S+ 0 0 11 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.852 81.0 52.9 -48.7 -42.3 2.9 -1.0 29.7 15 145 A D T 45S+ 0 0 123 -13,-0.6 -12,-0.1 -12,-0.4 -11,-0.1 0.940 116.1 35.8 -62.0 -52.6 1.4 -4.4 30.7 16 146 A A T 45S- 0 0 65 -13,-0.3 -1,-0.2 -3,-0.1 3,-0.1 0.540 104.3-128.0 -80.8 -4.4 4.6 -6.1 31.6 17 147 A Y T <5 + 0 0 131 -4,-1.4 2,-0.3 1,-0.2 11,-0.2 0.965 65.0 136.8 53.6 53.4 6.0 -2.9 33.0 18 148 A V E < -B 13 0A 51 -5,-1.5 -5,-2.8 9,-0.1 2,-0.3 -0.946 39.4-165.5-132.4 149.7 9.1 -3.5 30.8 19 149 A V E -B 12 0A 1 7,-0.4 7,-3.0 -2,-0.3 2,-0.3 -0.990 6.6-178.2-136.5 143.9 11.3 -1.4 28.6 20 150 A S E -BC 11 25A 8 -9,-2.2 -9,-3.7 -2,-0.3 2,-0.4 -0.996 11.7-161.3-142.6 145.5 13.8 -2.3 25.9 21 151 A K E > S-BC 10 24A 28 3,-2.5 3,-2.7 -2,-0.3 -11,-0.3 -0.998 86.9 -8.7-125.9 127.1 16.1 -0.4 23.6 22 152 A R T 3 S- 0 0 123 -13,-3.0 -12,-0.1 -2,-0.4 -1,-0.1 0.842 132.0 -59.6 56.3 28.0 17.5 -2.1 20.6 23 153 A D T 3 S+ 0 0 148 -14,-0.7 2,-0.4 1,-0.3 -1,-0.3 0.247 110.5 123.5 82.9 -11.4 15.9 -5.2 22.1 24 154 A E E < -C 21 0A 149 -3,-2.7 -3,-2.5 1,-0.0 -1,-0.3 -0.674 64.4-123.8 -81.9 130.9 18.0 -5.0 25.3 25 155 A T E -C 20 0A 112 -2,-0.4 2,-0.5 -5,-0.3 -5,-0.3 -0.542 21.9-152.0 -76.2 141.1 15.8 -4.9 28.4 26 156 A I - 0 0 28 -7,-3.0 2,-0.4 -2,-0.2 -7,-0.4 -0.960 10.1-134.2-119.7 118.0 16.3 -1.9 30.7 27 157 A E + 0 0 182 -2,-0.5 2,-0.3 -9,-0.1 -9,-0.1 -0.546 31.8 177.5 -72.4 121.5 15.6 -2.1 34.4 28 158 A L - 0 0 35 -2,-0.4 2,-0.1 -11,-0.2 -9,-0.0 -0.851 30.3-111.5-122.1 158.1 13.7 1.0 35.6 29 159 A T > - 0 0 64 -2,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.387 38.3-105.7 -77.7 166.0 12.3 2.0 39.0 30 160 A H H > S+ 0 0 101 1,-0.2 4,-2.6 2,-0.2 5,-0.1 0.959 124.0 46.3 -56.5 -52.2 8.5 2.1 39.3 31 161 A R H > S+ 0 0 83 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.913 110.9 52.1 -55.1 -49.5 8.7 5.9 39.2 32 162 A E H > S+ 0 0 13 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.927 111.6 46.0 -55.9 -48.4 11.0 5.9 36.3 33 163 A F H X S+ 0 0 7 -4,-2.7 4,-3.7 1,-0.2 5,-0.3 0.929 109.2 56.4 -60.1 -47.3 8.8 3.7 34.2 34 164 A E H X S+ 0 0 49 -4,-2.6 4,-2.0 -5,-0.2 -1,-0.2 0.889 112.2 41.9 -49.6 -47.4 5.7 5.7 35.2 35 165 A L H X S+ 0 0 0 -4,-2.2 4,-2.2 2,-0.2 5,-0.2 0.955 116.4 46.1 -67.7 -53.3 7.3 8.9 33.9 36 166 A L H X S+ 0 0 1 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.935 114.3 50.0 -55.7 -47.8 8.7 7.4 30.7 37 167 A H H X S+ 0 0 23 -4,-3.7 4,-1.0 1,-0.2 -1,-0.2 0.874 109.3 51.5 -59.3 -41.4 5.4 5.6 30.1 38 168 A Y H X S+ 0 0 35 -4,-2.0 4,-0.8 -5,-0.3 -1,-0.2 0.856 111.0 46.7 -66.3 -35.8 3.4 8.9 30.6 39 169 A L H < S+ 0 0 1 -4,-2.2 60,-0.3 1,-0.2 6,-0.3 0.817 109.2 56.0 -74.3 -30.4 5.6 10.7 28.1 40 170 A A H >< S+ 0 0 2 -4,-2.0 3,-0.6 -5,-0.2 -1,-0.2 0.686 102.1 56.1 -73.9 -20.1 5.3 7.8 25.7 41 171 A K H 3< S+ 0 0 127 -4,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.792 117.1 35.8 -78.4 -30.2 1.5 8.1 25.8 42 172 A H T >< S- 0 0 65 -4,-0.8 3,-1.9 -5,-0.1 -1,-0.2 -0.186 90.1-171.1-115.1 37.6 1.8 11.8 24.7 43 173 A I T < + 0 0 59 -3,-0.6 57,-0.2 1,-0.3 -3,-0.1 0.085 69.6 12.2 -33.6 128.7 4.7 11.4 22.3 44 174 A G T 3 S+ 0 0 41 55,-2.9 2,-0.5 1,-0.2 -1,-0.3 0.501 95.8 124.8 78.7 4.8 6.1 14.7 21.2 45 175 A Q < - 0 0 96 -3,-1.9 54,-0.3 -6,-0.3 2,-0.3 -0.863 57.2-133.4-104.1 126.4 4.2 16.8 23.7 46 176 A V - 0 0 47 -2,-0.5 2,-0.4 52,-0.1 52,-0.2 -0.563 27.3-175.6 -76.5 133.6 6.1 19.2 26.0 47 177 A M B -D 97 0B 8 50,-3.1 50,-2.2 -2,-0.3 45,-0.1 -0.993 22.1-119.3-138.3 133.2 5.1 19.0 29.6 48 178 A T > - 0 0 50 -2,-0.4 4,-2.8 48,-0.2 5,-0.2 -0.204 22.8-121.0 -65.4 153.9 6.1 21.0 32.7 49 179 A R H > S+ 0 0 71 46,-0.4 4,-2.4 1,-0.2 -1,-0.1 0.880 116.7 57.5 -59.6 -36.8 7.8 19.5 35.7 50 180 A E H > S+ 0 0 94 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.886 110.2 41.7 -61.0 -43.2 4.8 20.9 37.6 51 181 A H H > S+ 0 0 63 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.950 115.1 49.3 -69.2 -51.7 2.3 19.0 35.5 52 182 A L H X>S+ 0 0 0 -4,-2.8 4,-2.9 1,-0.2 5,-0.6 0.831 106.5 61.2 -56.7 -33.6 4.4 15.8 35.4 53 183 A L H X>S+ 0 0 14 -4,-2.4 4,-2.4 -5,-0.2 5,-0.6 0.970 110.1 34.6 -59.7 -60.2 4.8 16.0 39.2 54 184 A Q H X5S+ 0 0 79 -4,-1.4 4,-0.8 3,-0.2 -1,-0.2 0.859 121.4 51.7 -64.5 -35.4 1.1 15.7 40.1 55 185 A T H <5S+ 0 0 44 -4,-2.2 -2,-0.2 3,-0.2 -1,-0.2 0.925 123.8 23.0 -67.7 -50.0 0.5 13.3 37.2 56 186 A V H <5S+ 0 0 10 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.2 0.756 135.8 35.0 -90.8 -29.4 3.2 10.8 37.8 57 187 A W H <<< - 0 0 26 -4,-0.8 3,-1.7 -5,-0.6 -3,-0.2 -0.008 21.0 -92.3 109.9 145.9 0.1 12.2 42.4 59 189 A Y T 3 S+ 0 0 161 1,-0.3 -1,-0.1 -4,-0.1 -5,-0.1 0.729 123.6 58.0 -64.0 -20.5 -2.0 15.2 43.2 60 190 A D T 3 S+ 0 0 152 -6,-0.2 2,-0.7 -3,-0.1 -1,-0.3 0.520 85.6 96.9 -86.0 -7.7 -1.3 14.6 46.9 61 191 A Y < + 0 0 87 -3,-1.7 -4,-0.1 -7,-0.1 -3,-0.1 -0.746 39.0 166.2 -91.2 112.5 2.5 14.9 46.4 62 192 A F + 0 0 181 -2,-0.7 -1,-0.1 -5,-0.1 3,-0.1 0.062 28.1 131.1-114.2 28.1 4.0 18.3 47.1 63 193 A G S S- 0 0 31 1,-0.2 -10,-0.0 -10,-0.1 -2,-0.0 -0.114 70.9 -61.3 -68.3 175.7 7.7 17.6 47.2 64 194 A D > - 0 0 96 1,-0.1 3,-1.3 2,-0.1 4,-0.2 -0.259 40.8-127.1 -62.7 144.3 10.2 19.7 45.2 65 195 A V T >> S+ 0 0 33 1,-0.2 3,-1.4 2,-0.1 4,-0.7 0.644 98.7 79.3 -66.0 -17.0 9.9 19.9 41.4 66 196 A R H 3> S+ 0 0 169 1,-0.3 4,-3.2 2,-0.2 -1,-0.2 0.650 74.6 78.8 -67.7 -12.2 13.6 18.9 40.9 67 197 A T H <> S+ 0 0 37 -3,-1.3 4,-2.4 1,-0.2 -1,-0.3 0.839 91.3 51.9 -62.1 -34.8 12.6 15.3 41.5 68 198 A V H <> S+ 0 0 0 -3,-1.4 4,-2.1 2,-0.2 -1,-0.2 0.879 110.6 48.2 -68.6 -38.0 11.3 15.2 38.0 69 199 A D H X S+ 0 0 39 -4,-0.7 4,-2.1 2,-0.2 -2,-0.2 0.929 111.5 49.5 -66.0 -46.4 14.7 16.6 36.9 70 200 A V H X S+ 0 0 88 -4,-3.2 4,-1.8 1,-0.2 -2,-0.2 0.893 113.5 46.7 -58.7 -41.8 16.4 13.9 39.0 71 201 A T H X S+ 0 0 14 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.826 110.5 51.4 -70.8 -34.2 14.2 11.2 37.5 72 202 A V H X S+ 0 0 0 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.853 108.2 53.5 -71.0 -33.6 14.7 12.5 33.9 73 203 A R H X S+ 0 0 161 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.942 110.0 46.8 -65.1 -47.4 18.5 12.4 34.5 74 204 A R H X S+ 0 0 102 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.868 110.3 51.8 -63.2 -39.2 18.3 8.7 35.6 75 205 A L H X S+ 0 0 0 -4,-2.0 4,-2.3 2,-0.2 5,-0.4 0.892 111.6 49.5 -62.9 -41.2 16.1 7.7 32.6 76 206 A R H X S+ 0 0 39 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.937 110.8 46.9 -63.2 -49.9 18.7 9.4 30.4 77 207 A E H < S+ 0 0 77 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.909 118.9 43.0 -59.9 -40.5 21.7 7.7 31.9 78 208 A K H < S+ 0 0 60 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.781 130.9 20.4 -76.9 -28.3 19.8 4.4 31.7 79 209 A I H < S+ 0 0 1 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.2 0.803 99.8 84.5-111.9 -40.9 18.4 4.8 28.2 80 210 A E < - 0 0 9 -4,-2.0 4,-0.0 -5,-0.4 0, 0.0 -0.377 61.4-145.4 -69.4 143.7 20.3 7.4 26.1 81 211 A D S S+ 0 0 96 1,-0.3 -1,-0.1 4,-0.1 3,-0.1 0.954 101.3 12.8 -69.4 -48.3 23.4 6.3 24.2 82 212 A N > - 0 0 91 3,-0.2 3,-1.4 1,-0.1 -1,-0.3 -0.928 68.8-166.7-130.4 105.6 24.8 9.8 25.0 83 213 A P T 3 S+ 0 0 51 0, 0.0 -1,-0.1 0, 0.0 -6,-0.1 0.738 82.0 78.4 -60.6 -25.6 22.8 11.8 27.7 84 214 A S T 3 S+ 0 0 101 1,-0.3 -8,-0.0 -3,-0.1 -3,-0.0 0.807 113.3 18.6 -54.7 -34.4 24.7 14.9 26.6 85 215 A H S < S- 0 0 158 -3,-1.4 -1,-0.3 5,-0.0 -3,-0.2 -0.635 92.8-148.4-139.8 79.3 22.3 15.1 23.6 86 216 A P - 0 0 22 0, 0.0 5,-0.1 0, 0.0 -10,-0.0 -0.032 12.1-165.2 -46.6 147.2 19.2 12.9 24.4 87 217 A N S S+ 0 0 61 3,-0.1 3,-0.1 13,-0.0 -7,-0.0 0.643 87.3 18.5-107.6 -26.4 17.6 11.2 21.4 88 218 A W S S+ 0 0 2 1,-0.2 12,-3.9 11,-0.1 2,-1.0 0.800 120.8 50.5-108.7 -63.3 14.3 10.3 23.2 89 219 A I E S-E 99 0B 0 10,-0.2 2,-0.3 -17,-0.1 -1,-0.2 -0.723 77.0-175.3 -86.7 102.7 13.9 12.4 26.4 90 220 A V E -E 98 0B 28 8,-2.8 8,-1.6 -2,-1.0 2,-0.6 -0.744 22.9-130.5-106.4 150.0 14.4 16.0 25.3 91 221 A T E -E 97 0B 58 -2,-0.3 2,-1.3 6,-0.2 6,-0.2 -0.839 5.4-159.0 -98.1 121.2 14.5 19.3 27.2 92 222 A R E >> -E 96 0B 132 4,-1.9 3,-2.9 -2,-0.6 4,-1.6 -0.804 40.2-122.6 -96.3 87.1 12.4 22.2 26.0 93 223 A R T 34 S+ 0 0 220 -2,-1.3 4,-0.0 1,-0.3 -2,-0.0 0.042 86.4 4.6 -36.6 127.8 14.6 24.8 27.8 94 224 A G T 34 S+ 0 0 93 1,-0.1 -1,-0.3 2,-0.1 -3,-0.0 0.377 129.9 60.4 75.7 -4.8 12.6 26.9 30.2 95 225 A V T <4 S- 0 0 65 -3,-2.9 -46,-0.4 1,-0.3 2,-0.2 0.736 100.7 -99.9-115.3 -64.6 9.4 24.9 29.6 96 226 A G E < - E 0 92B 8 -4,-1.6 -4,-1.9 -48,-0.2 -1,-0.3 -0.809 44.1 -52.0 176.6-134.0 9.7 21.3 30.5 97 227 A Y E +DE 47 91B 22 -50,-2.2 -50,-3.1 -2,-0.2 2,-0.3 -0.883 35.6 177.8-136.3 166.0 10.3 17.9 28.9 98 228 A Y E - E 0 90B 56 -8,-1.6 -8,-2.8 -2,-0.3 2,-0.6 -0.969 33.9-111.4-165.9 151.4 9.0 15.6 26.1 99 229 A L E - E 0 89B 0 -60,-0.3 -55,-2.9 -54,-0.3 -10,-0.2 -0.831 46.7-116.6 -91.4 121.7 9.6 12.3 24.5 100 230 A R - 0 0 70 -12,-3.9 -57,-0.1 -2,-0.6 -11,-0.0 -0.379 11.7-137.6 -68.0 128.4 10.9 12.9 20.9 101 231 A N - 0 0 90 -2,-0.2 2,-3.6 1,-0.1 -1,-0.1 -0.750 26.5-124.7 -83.5 107.5 8.9 11.8 17.9 102 232 A P 0 0 54 0, 0.0 -1,-0.1 0, 0.0 -94,-0.1 -0.201 360.0 360.0 -55.2 66.7 11.5 10.3 15.5 103 233 A E 0 0 208 -2,-3.6 0, 0.0 0, 0.0 0, 0.0 0.219 360.0 360.0 66.5 360.0 10.4 12.6 12.7