==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 23-SEP-99 1D2D . COMPND 2 MOLECULE: TRNA SYNTHETASE; . SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; . AUTHOR B.CAHUZAC,E.BERTHONNEAU,N.BIRLIRAKIS,E.GUITTET,M.MIRANDE . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4164.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 51.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 181 0, 0.0 2,-0.4 0, 0.0 43,-0.0 0.000 360.0 360.0 360.0 -59.5 4.9 -1.4 -5.0 2 2 A V + 0 0 98 5,-0.0 2,-0.3 0, 0.0 42,-0.0 -0.881 360.0 176.3-114.5 143.8 5.2 -3.5 -1.9 3 3 A Y > - 0 0 39 -2,-0.4 4,-0.7 1,-0.2 5,-0.3 -0.937 12.9-156.4-149.4 123.0 3.3 -6.7 -1.0 4 4 A D H >> S+ 0 0 116 -2,-0.3 4,-3.5 3,-0.2 3,-0.9 0.880 79.0 9.5 -66.2-111.1 3.8 -8.8 2.1 5 5 A K H 3>>S+ 0 0 142 1,-0.3 4,-1.8 2,-0.2 5,-0.5 0.820 127.2 59.0 -42.6 -42.0 2.8 -12.6 2.2 6 6 A I H 3>5S+ 0 0 0 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.948 116.8 31.5 -57.4 -49.7 2.3 -12.5 -1.6 7 7 A A H < S+ 0 0 112 -4,-3.4 3,-0.6 3,-0.2 -1,-0.2 0.832 114.5 53.7 -57.8 -30.9 13.0 -22.7 -9.5 18 18 A A H 3< S+ 0 0 69 -4,-1.3 -1,-0.2 -5,-0.5 -2,-0.2 0.945 114.7 37.9 -68.2 -47.7 16.1 -20.6 -10.2 19 19 A E T 3< S- 0 0 121 -4,-3.1 -1,-0.2 -5,-0.1 -2,-0.2 0.248 133.0 -92.7 -86.1 12.5 18.4 -22.7 -8.1 20 20 A K < + 0 0 196 -3,-0.6 -3,-0.2 -4,-0.3 -2,-0.1 0.875 63.2 163.7 75.0 102.5 16.5 -25.8 -9.3 21 21 A A - 0 0 35 -4,-0.1 2,-0.2 -8,-0.1 -1,-0.1 -0.786 42.9 -70.0-136.7 178.9 13.6 -26.9 -7.1 22 22 A P >> - 0 0 74 0, 0.0 4,-2.4 0, 0.0 3,-0.6 -0.521 31.9-133.3 -78.4 141.8 10.5 -29.2 -7.4 23 23 A K H 3> S+ 0 0 177 1,-0.2 4,-3.0 2,-0.2 5,-0.4 0.851 104.5 67.0 -60.3 -33.8 7.6 -28.1 -9.7 24 24 A A H 3> S+ 0 0 50 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.916 109.7 34.3 -53.6 -45.4 5.3 -29.0 -6.8 25 25 A K H <> S+ 0 0 93 -3,-0.6 4,-2.5 2,-0.2 -2,-0.2 0.918 114.9 55.9 -79.4 -44.0 6.7 -26.2 -4.7 26 26 A V H X S+ 0 0 22 -4,-2.4 4,-1.8 1,-0.2 -2,-0.2 0.945 114.1 40.8 -53.0 -50.4 7.3 -23.7 -7.5 27 27 A T H X S+ 0 0 25 -4,-3.0 4,-2.2 1,-0.2 -1,-0.2 0.930 107.9 62.1 -64.4 -44.9 3.7 -24.0 -8.6 28 28 A E H X S+ 0 0 77 -4,-1.7 4,-2.3 -5,-0.4 -1,-0.2 0.909 105.0 48.3 -45.8 -47.0 2.5 -24.0 -5.0 29 29 A A H X S+ 0 0 2 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.946 104.6 57.5 -60.6 -48.1 4.0 -20.6 -4.6 30 30 A V H X S+ 0 0 3 -4,-1.8 24,-1.9 1,-0.2 4,-1.8 0.871 108.5 50.0 -49.0 -38.5 2.3 -19.4 -7.8 31 31 A E H X S+ 0 0 84 -4,-2.2 4,-3.8 2,-0.2 5,-0.3 0.944 105.0 52.7 -66.8 -50.5 -0.9 -20.4 -6.1 32 32 A C H X S+ 0 0 44 -4,-2.3 4,-2.6 1,-0.2 5,-0.5 0.838 107.5 57.5 -55.6 -27.9 -0.1 -18.5 -2.9 33 33 A L H X S+ 0 0 0 -4,-2.3 4,-2.0 -5,-0.2 -1,-0.2 0.961 113.4 35.4 -66.8 -49.6 0.4 -15.6 -5.3 34 34 A L H X S+ 0 0 60 -4,-1.8 4,-1.8 2,-0.2 -2,-0.2 0.927 123.9 44.2 -69.7 -45.0 -3.1 -15.8 -6.7 35 35 A S H X S+ 0 0 72 -4,-3.8 4,-1.6 2,-0.2 -3,-0.2 0.964 118.4 41.7 -64.6 -53.1 -4.7 -16.8 -3.4 36 36 A L H X S+ 0 0 46 -4,-2.6 4,-3.1 -5,-0.3 3,-0.2 0.933 112.0 54.6 -63.1 -46.3 -2.9 -14.3 -1.3 37 37 A K H X S+ 0 0 41 -4,-2.0 4,-1.3 -5,-0.5 10,-0.9 0.908 105.8 53.2 -55.7 -42.4 -3.2 -11.4 -3.8 38 38 A A H < S+ 0 0 55 -4,-1.8 -1,-0.3 9,-0.2 -2,-0.2 0.897 112.8 44.2 -59.6 -39.4 -7.0 -12.0 -3.8 39 39 A E H < S+ 0 0 154 -4,-1.6 -1,-0.2 -3,-0.2 -2,-0.2 0.871 112.6 56.8 -71.1 -37.5 -7.0 -11.7 -0.1 40 40 A Y H < + 0 0 28 -4,-3.1 -2,-0.2 -5,-0.2 -3,-0.2 0.965 56.5 130.4 -54.2 -89.0 -4.6 -8.7 -0.3 41 41 A K < + 0 0 111 -4,-1.3 -1,-0.1 1,-0.1 -3,-0.1 0.822 30.9 148.7 33.0 45.1 -6.5 -6.2 -2.6 42 42 A E S S- 0 0 118 1,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.995 73.5 -65.2 -67.7 -73.9 -5.8 -3.6 0.1 43 43 A K S S+ 0 0 171 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.041 117.3 64.5-175.3 42.7 -5.5 -0.5 -1.9 44 44 A T S S- 0 0 82 -43,-0.0 -41,-0.1 -42,-0.0 0, 0.0 0.497 117.0 -5.2-134.5 -68.6 -2.5 -0.7 -4.2 45 45 A G S S- 0 0 37 -8,-0.1 -42,-0.0 0, 0.0 -8,-0.0 0.701 81.0-136.2-107.9 -26.5 -2.7 -3.4 -6.9 46 46 A K S S+ 0 0 92 -9,-0.1 -8,-0.1 3,-0.0 -9,-0.1 0.852 95.6 17.1 63.5 106.0 -5.9 -5.2 -6.0 47 47 A E S S- 0 0 69 -10,-0.9 -9,-0.2 -11,-0.1 -10,-0.2 0.998 116.0-119.5 57.6 64.9 -5.2 -8.9 -6.2 48 48 A Y - 0 0 26 -11,-0.7 -11,-0.1 -12,-0.2 -10,-0.1 0.118 14.2-121.6 -41.1 145.0 -1.5 -7.9 -6.1 49 49 A V + 0 0 106 1,-0.2 -1,-0.1 -12,-0.1 -15,-0.0 -0.820 40.7 162.6 -95.6 107.2 0.7 -8.7 -9.0 50 50 A P - 0 0 10 0, 0.0 -1,-0.2 0, 0.0 -20,-0.0 0.951 50.6 -97.3 -88.0 -70.5 3.6 -10.9 -7.7 51 51 A G S S+ 0 0 46 -21,-0.1 -44,-0.0 -37,-0.0 -40,-0.0 -0.161 107.4 36.8-177.6 -75.1 5.3 -12.7 -10.7 52 52 A L S S+ 0 0 59 -42,-0.1 -22,-0.1 -26,-0.1 -25,-0.0 0.998 80.2 176.3 -60.4 -64.6 4.3 -16.2 -11.4 53 53 A E - 0 0 35 -24,-0.1 -22,-0.2 -23,-0.0 -23,-0.1 0.952 51.2 -3.2 58.2 97.1 0.7 -15.5 -10.4 54 54 A H - 0 0 88 -24,-1.9 2,-0.3 -25,-0.1 -23,-0.1 0.614 67.4-162.2 67.0 135.8 -1.6 -18.5 -11.0 55 55 A H 0 0 101 1,-0.2 -1,-0.1 -28,-0.1 -2,-0.0 -0.993 360.0 360.0-150.1 142.2 -0.4 -21.8 -12.4 56 56 A H 0 0 197 -2,-0.3 -1,-0.2 0, 0.0 -2,-0.0 0.973 360.0 360.0 -82.9 360.0 -2.2 -24.8 -14.0