==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA/RNA BINDING PROTEIN 09-MAY-08 3D2W . COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR P.H.KUO,H.S.YUAN . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4287.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 30.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 190 A G 0 0 70 0, 0.0 51,-0.2 0, 0.0 50,-0.0 0.000 360.0 360.0 360.0 83.3 8.2 8.2 13.3 2 191 A S + 0 0 28 49,-0.1 43,-3.2 43,-0.1 2,-0.4 0.189 360.0 91.7-111.2 17.3 10.4 6.4 15.7 3 192 A K E -A 44 0A 88 41,-0.2 68,-1.7 68,-0.2 2,-0.3 -0.928 55.2-163.3-113.3 134.5 13.2 8.9 16.0 4 193 A V E -AB 43 70A 0 39,-2.9 39,-2.3 -2,-0.4 2,-0.4 -0.886 16.7-131.1-114.1 151.1 13.4 11.7 18.6 5 194 A F E -AB 42 69A 62 64,-3.4 64,-2.5 -2,-0.3 2,-0.6 -0.812 18.7-155.1 -92.3 136.2 15.5 14.8 18.7 6 195 A V E -AB 41 68A 0 35,-2.9 35,-1.5 -2,-0.4 3,-0.4 -0.945 13.1-163.6-119.3 108.1 17.2 15.4 22.0 7 196 A G E +AB 40 67A 8 60,-3.2 60,-1.6 -2,-0.6 33,-0.2 -0.625 62.4 30.1 -98.1 154.5 18.0 19.1 22.7 8 197 A R S S+ 0 0 127 31,-1.4 32,-0.2 -2,-0.2 -1,-0.2 0.763 74.2 165.1 71.2 29.6 20.4 20.6 25.3 9 198 A C - 0 0 9 30,-1.4 2,-0.3 -3,-0.4 -1,-0.2 -0.362 29.5-134.3 -64.9 154.0 22.8 17.7 25.3 10 199 A T > - 0 0 41 54,-0.1 3,-1.7 1,-0.1 28,-0.1 -0.781 21.6-108.6-108.6 163.3 26.2 18.3 26.9 11 200 A E T 3 S+ 0 0 146 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.782 114.4 60.1 -64.2 -30.1 29.6 17.4 25.4 12 201 A D T 3 S+ 0 0 82 2,-0.1 2,-1.0 1,-0.0 -1,-0.3 0.572 78.3 105.1 -74.7 -9.4 30.3 14.6 27.9 13 202 A M < - 0 0 7 -3,-1.7 2,-0.1 4,-0.1 -4,-0.0 -0.627 59.6-163.5 -76.0 105.0 27.1 12.8 26.8 14 203 A T > - 0 0 63 -2,-1.0 4,-2.7 1,-0.1 5,-0.2 -0.409 32.2-110.7 -86.9 164.1 28.4 9.8 24.8 15 204 A A H > S+ 0 0 43 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.910 121.3 51.6 -57.4 -41.6 26.4 7.7 22.4 16 205 A E H > S+ 0 0 125 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.920 110.1 48.9 -60.1 -45.7 26.7 4.8 24.8 17 206 A E H > S+ 0 0 62 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.927 112.5 47.1 -61.9 -44.5 25.4 6.9 27.7 18 207 A L H X S+ 0 0 1 -4,-2.7 4,-3.1 2,-0.2 5,-0.2 0.909 112.7 49.4 -65.4 -41.8 22.4 8.1 25.7 19 208 A Q H X S+ 0 0 79 -4,-2.6 4,-2.3 -5,-0.2 -2,-0.2 0.945 111.3 49.5 -62.7 -46.0 21.6 4.6 24.6 20 209 A Q H < S+ 0 0 102 -4,-2.7 4,-0.3 -5,-0.2 -2,-0.2 0.895 115.4 44.8 -56.3 -42.8 21.9 3.3 28.1 21 210 A F H >< S+ 0 0 41 -4,-2.4 3,-1.1 -5,-0.2 -2,-0.2 0.956 116.8 42.8 -67.9 -50.0 19.6 6.1 29.3 22 211 A F H >X S+ 0 0 0 -4,-3.1 3,-1.8 1,-0.2 4,-0.5 0.738 96.5 73.4 -76.6 -21.2 17.0 5.9 26.6 23 212 A C T 3< S+ 0 0 57 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.1 0.616 77.8 79.6 -72.2 -6.4 16.7 2.1 26.4 24 213 A Q T <4 S+ 0 0 123 -3,-1.1 -1,-0.3 -4,-0.3 -2,-0.1 0.799 97.6 45.2 -60.1 -27.5 14.8 2.2 29.8 25 214 A Y T <4 S- 0 0 74 -3,-1.8 2,-0.3 1,-0.4 -1,-0.2 0.650 132.4 -50.8 -90.8 -21.5 11.8 3.2 27.6 26 215 A G S < S- 0 0 21 -4,-0.5 -1,-0.4 -3,-0.1 2,-0.0 -0.882 83.0 -37.6 161.6 168.7 12.2 0.6 24.9 27 216 A E - 0 0 137 -2,-0.3 19,-2.2 -3,-0.1 2,-0.5 -0.278 51.4-152.2 -54.9 125.5 14.7 -0.8 22.5 28 217 A V E +C 45 0A 19 17,-0.2 17,-0.3 1,-0.1 3,-0.1 -0.906 17.2 177.1-100.7 131.0 17.1 1.8 21.0 29 218 A V E + 0 0 83 15,-2.9 2,-0.3 -2,-0.5 16,-0.2 0.625 63.2 13.1-111.4 -19.5 18.5 1.0 17.6 30 219 A D E -C 44 0A 100 14,-1.4 14,-2.8 2,-0.0 2,-0.3 -0.995 49.8-166.9-153.6 155.6 20.5 4.1 16.8 31 220 A V E -C 43 0A 22 -2,-0.3 2,-0.5 12,-0.2 12,-0.2 -0.989 9.7-165.7-137.7 134.3 22.0 7.2 18.3 32 221 A F E -C 42 0A 121 10,-2.7 10,-2.5 -2,-0.3 -2,-0.0 -0.988 6.5-179.6-123.9 124.2 23.4 10.1 16.4 33 222 A I - 0 0 26 -2,-0.5 8,-0.2 8,-0.2 -18,-0.1 -0.985 29.7-123.7-120.0 117.8 25.6 12.8 17.9 34 223 A P - 0 0 10 0, 0.0 4,-0.3 0, 0.0 5,-0.2 -0.252 26.3-119.4 -59.9 146.7 26.8 15.6 15.6 35 224 A K S S+ 0 0 163 2,-0.1 2,-0.2 3,-0.1 -2,-0.0 -0.993 97.3 41.1-131.9 124.7 30.5 16.2 15.3 36 225 A P S S- 0 0 118 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.551 119.6 -87.1 -68.9 171.1 31.7 18.9 16.0 37 226 A F + 0 0 86 -2,-0.2 -2,-0.1 1,-0.1 -26,-0.1 -0.219 52.5 164.9 -57.5 127.6 29.6 19.4 19.2 38 227 A R - 0 0 170 -4,-0.3 -30,-0.2 2,-0.3 -1,-0.1 0.287 52.8-112.1-127.2 7.2 26.2 21.0 18.6 39 228 A A S S+ 0 0 36 1,-0.2 -30,-1.4 -5,-0.2 -31,-1.4 0.787 85.3 81.8 67.3 30.0 24.4 20.2 21.9 40 229 A F E -A 7 0A 32 -32,-0.2 -2,-0.3 -33,-0.2 2,-0.3 -0.957 50.7-171.6-150.4 172.2 21.8 17.8 20.5 41 230 A A E -A 6 0A 1 -35,-1.5 -35,-2.9 -2,-0.3 2,-0.4 -0.956 19.8-126.7-153.3 166.0 21.4 14.2 19.4 42 231 A F E -AC 5 32A 38 -10,-2.5 -10,-2.7 -2,-0.3 2,-0.4 -0.987 18.7-166.7-119.7 139.6 19.0 11.8 17.7 43 232 A V E -AC 4 31A 0 -39,-2.3 -39,-2.9 -2,-0.4 2,-0.5 -0.994 6.5-155.4-126.4 128.0 17.8 8.6 19.3 44 233 A T E -AC 3 30A 24 -14,-2.8 -15,-2.9 -2,-0.4 -14,-1.4 -0.895 7.1-161.2-106.9 128.6 16.0 6.0 17.2 45 234 A F E - C 0 28A 1 -43,-3.2 -17,-0.2 -2,-0.5 -18,-0.1 -0.734 24.4-135.1-101.6 153.0 13.6 3.4 18.8 46 235 A A S S+ 0 0 55 -19,-2.2 2,-0.5 -2,-0.3 -18,-0.1 0.851 96.1 58.9 -67.9 -33.9 12.5 0.1 17.4 47 236 A D >> - 0 0 82 -20,-0.5 4,-1.4 1,-0.1 3,-0.6 -0.863 68.3-155.7-106.9 120.5 8.9 1.0 18.5 48 237 A D H 3> S+ 0 0 78 -2,-0.5 4,-2.5 1,-0.2 5,-0.2 0.868 95.3 61.8 -55.9 -41.2 7.1 4.2 17.3 49 238 A K H 3> S+ 0 0 165 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.858 102.2 51.7 -56.9 -37.8 4.9 4.3 20.4 50 239 A V H <> S+ 0 0 16 -3,-0.6 4,-1.0 2,-0.2 -1,-0.2 0.939 109.7 47.6 -65.9 -47.7 8.0 4.7 22.6 51 240 A A H >X S+ 0 0 0 -4,-1.4 4,-0.9 1,-0.2 3,-0.7 0.934 112.6 49.6 -59.7 -45.7 9.3 7.7 20.6 52 241 A Q H 3< S+ 0 0 91 -4,-2.5 3,-0.4 1,-0.2 -1,-0.2 0.841 104.2 58.3 -64.7 -33.8 5.9 9.4 20.6 53 242 A S H 3< S+ 0 0 72 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.763 107.6 48.5 -68.2 -25.1 5.4 9.0 24.4 54 243 A L H X< S+ 0 0 2 -4,-1.0 3,-2.1 -3,-0.7 14,-0.3 0.675 83.3 110.8 -86.7 -21.1 8.7 10.9 25.0 55 244 A C T 3< S+ 0 0 31 -4,-0.9 14,-0.2 -3,-0.4 3,-0.1 -0.356 83.4 19.3 -65.4 131.8 8.0 13.9 22.7 56 245 A G T 3 S+ 0 0 51 12,-2.9 -1,-0.3 1,-0.3 2,-0.2 0.305 99.7 119.4 93.0 -6.3 7.4 17.1 24.6 57 246 A E < - 0 0 83 -3,-2.1 11,-2.7 11,-0.1 2,-0.5 -0.499 56.6-143.2 -88.5 158.2 9.1 15.8 27.8 58 247 A D E -D 67 0A 88 9,-0.2 2,-0.3 -2,-0.2 9,-0.2 -0.991 26.0-168.3-121.5 117.7 12.1 17.2 29.6 59 248 A L E -D 66 0A 19 7,-2.1 7,-2.7 -2,-0.5 2,-0.6 -0.723 19.8-123.8-111.4 156.1 14.2 14.4 31.0 60 249 A I E +D 65 0A 102 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.901 26.9 177.4-106.9 117.3 17.1 14.5 33.4 61 250 A I E > S-D 64 0A 6 3,-2.6 3,-1.9 -2,-0.6 -48,-0.0 -0.984 78.8 -22.1-119.2 116.5 20.4 12.9 32.2 62 251 A K T 3 S- 0 0 109 -2,-0.5 -1,-0.1 1,-0.3 3,-0.1 0.883 129.7 -50.0 47.7 44.3 23.3 13.2 34.7 63 252 A G T 3 S+ 0 0 67 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.433 115.3 116.8 80.3 0.9 21.5 16.2 36.3 64 253 A I E < - D 0 61A 44 -3,-1.9 -3,-2.6 -54,-0.0 2,-0.7 -0.847 63.1-131.8-108.0 132.8 20.9 18.0 33.0 65 254 A S E - D 0 60A 49 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.790 27.6-175.4 -86.3 115.7 17.4 18.7 31.6 66 255 A V E - D 0 59A 0 -7,-2.7 -7,-2.1 -2,-0.7 2,-0.5 -0.832 19.0-131.7-107.1 149.1 17.2 17.7 27.9 67 256 A H E -BD 7 58A 61 -60,-1.6 -60,-3.2 -2,-0.3 2,-0.5 -0.861 13.6-146.2-106.0 135.3 14.1 18.4 25.8 68 257 A I E +B 6 0A 0 -11,-2.7 -12,-2.9 -2,-0.5 2,-0.3 -0.848 27.5 159.4-102.7 130.3 12.6 15.7 23.6 69 258 A S E -B 5 0A 49 -64,-2.5 -64,-3.4 -2,-0.5 2,-0.1 -0.909 45.8 -79.8-139.9 165.4 11.0 16.5 20.3 70 259 A N E -B 4 0A 76 -2,-0.3 2,-0.4 -66,-0.2 -66,-0.2 -0.448 44.9-121.4 -64.9 141.3 10.1 14.8 17.0 71 260 A A 0 0 30 -68,-1.7 -68,-0.2 -28,-0.1 -1,-0.1 -0.722 360.0 360.0 -80.2 131.3 13.0 14.3 14.6 72 261 A E 0 0 215 -2,-0.4 -68,-0.0 -71,-0.0 0, 0.0 -0.756 360.0 360.0-116.0 360.0 12.3 16.0 11.2