==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-SEP-05 2D3D . COMPND 2 MOLECULE: VTS1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR T.AVIV,A.N.AMBORSKI,X.S.ZHAO,J.J.KWAN,P.E.JOHNSON,F.SICHERI, . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4988.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 41.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 441 A S 0 0 51 0, 0.0 2,-1.1 0, 0.0 6,-0.2 0.000 360.0 360.0 360.0-107.7 16.2 -6.4 11.2 2 442 A M + 0 0 62 4,-0.1 3,-0.1 5,-0.1 21,-0.0 -0.330 360.0 122.5 -90.4 48.8 19.1 -4.2 12.5 3 443 A N >> - 0 0 84 -2,-1.1 4,-2.6 1,-0.1 3,-1.1 -0.983 59.8-146.7 -98.0 113.7 20.8 -4.0 9.2 4 444 A P H 3> S+ 0 0 43 0, 0.0 4,-1.5 0, 0.0 -1,-0.1 0.812 97.0 58.2 -52.9 -32.7 21.0 -0.3 8.6 5 445 A K H 34 S+ 0 0 141 2,-0.2 4,-0.2 1,-0.2 -3,-0.1 0.785 109.7 43.1 -68.6 -29.3 20.6 -0.9 4.9 6 446 A S H X4 S+ 0 0 29 -3,-1.1 3,-1.2 2,-0.2 6,-0.2 0.913 113.3 51.1 -79.5 -45.2 17.3 -2.7 5.5 7 447 A L H 3< S+ 0 0 0 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.1 0.773 116.7 40.6 -61.2 -28.2 16.0 -0.1 8.0 8 448 A T T 3< S+ 0 0 11 -4,-1.5 71,-0.4 -5,-0.2 -1,-0.3 0.328 80.2 130.3-106.9 7.6 16.8 2.8 5.7 9 449 A D X> - 0 0 41 -3,-1.2 4,-2.9 -4,-0.2 3,-1.0 -0.448 57.9-140.1 -60.9 120.5 15.5 1.1 2.5 10 450 A P H 3> S+ 0 0 32 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.844 101.6 57.7 -55.8 -34.3 13.2 3.7 0.9 11 451 A K H 34 S+ 0 0 162 2,-0.2 8,-0.1 1,-0.2 -2,-0.1 0.851 112.3 40.2 -61.8 -35.5 10.8 0.9 -0.1 12 452 A L H X4 S+ 0 0 31 -3,-1.0 3,-1.6 -6,-0.2 7,-0.5 0.880 111.6 54.4 -84.5 -40.6 10.5 -0.2 3.5 13 453 A L H 3< S+ 0 0 1 -4,-2.9 24,-0.5 1,-0.3 3,-0.3 0.853 109.7 50.0 -59.2 -33.3 10.3 3.4 5.0 14 454 A K T 3< S+ 0 0 131 -4,-1.9 -1,-0.3 -5,-0.3 2,-0.2 0.429 111.4 52.3 -85.4 4.0 7.4 4.0 2.6 15 455 A N X> + 0 0 71 -3,-1.6 4,-2.5 1,-0.1 3,-0.7 -0.637 65.5 176.6-137.0 76.9 5.7 0.8 3.8 16 456 A I H 3> S+ 0 0 9 -3,-0.3 4,-3.5 1,-0.3 5,-0.3 0.871 78.5 57.2 -58.5 -41.7 5.5 0.9 7.5 17 457 A P H 3> S+ 0 0 40 0, 0.0 4,-2.1 0, 0.0 -1,-0.3 0.932 114.0 41.0 -51.9 -42.1 3.6 -2.3 8.0 18 458 A M H <> S+ 0 0 78 -3,-0.7 4,-2.0 2,-0.2 -2,-0.2 0.859 111.9 55.2 -74.4 -34.9 6.4 -4.1 6.1 19 459 A W H X S+ 0 0 1 -4,-2.5 4,-0.6 -7,-0.5 3,-0.2 0.948 111.7 45.1 -56.7 -47.9 9.1 -2.1 7.9 20 460 A L H ><>S+ 0 0 0 -4,-3.5 5,-2.8 1,-0.2 3,-1.1 0.898 109.6 54.9 -63.9 -41.4 7.5 -3.3 11.1 21 461 A K H ><5S+ 0 0 112 -4,-2.1 3,-1.5 -5,-0.3 -1,-0.2 0.857 98.8 62.3 -60.3 -33.7 7.3 -6.9 9.8 22 462 A S H 3<5S+ 0 0 36 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.730 110.4 40.8 -64.2 -22.9 11.1 -6.9 9.0 23 463 A L T <<5S- 0 0 0 -3,-1.1 -1,-0.3 -4,-0.6 -2,-0.2 0.331 118.3-112.4-102.2 2.3 11.6 -6.4 12.8 24 464 A R T < 5S+ 0 0 167 -3,-1.5 -3,-0.2 -4,-0.2 -2,-0.1 0.867 89.6 113.9 60.4 41.0 8.9 -8.9 13.7 25 465 A L > < + 0 0 8 -5,-2.8 3,-1.8 -8,-0.1 -4,-0.3 0.071 24.5 121.2-124.4 21.5 6.8 -6.0 15.1 26 466 A H G > + 0 0 92 -6,-0.4 3,-2.5 1,-0.3 4,-0.3 0.710 57.8 78.9 -63.2 -20.6 3.9 -6.1 12.7 27 467 A K G 3 S+ 0 0 156 1,-0.3 3,-0.5 2,-0.1 -1,-0.3 0.755 90.9 55.3 -60.5 -20.5 1.4 -6.6 15.5 28 468 A Y G X> S+ 0 0 30 -3,-1.8 4,-1.4 1,-0.2 3,-0.8 0.331 76.3 99.6 -92.5 6.6 1.7 -2.9 16.2 29 469 A S H <> S+ 0 0 22 -3,-2.5 4,-2.6 1,-0.2 5,-0.2 0.850 70.2 69.1 -58.9 -34.7 0.8 -2.0 12.6 30 470 A D H 34 S+ 0 0 138 -3,-0.5 -1,-0.2 -4,-0.3 4,-0.1 0.866 112.5 27.8 -50.0 -41.4 -2.8 -1.3 13.8 31 471 A A H <4 S+ 0 0 32 -3,-0.8 -1,-0.2 1,-0.1 -2,-0.2 0.637 129.7 39.0 -96.9 -18.5 -1.7 1.8 15.8 32 472 A L H >< S+ 0 0 0 -4,-1.4 3,-1.7 1,-0.1 -2,-0.2 0.635 85.0 87.7-111.4 -16.6 1.4 2.8 13.7 33 473 A S T 3< S+ 0 0 64 -4,-2.6 -17,-0.2 1,-0.3 -3,-0.1 0.675 88.0 56.6 -65.6 -24.2 0.6 2.3 10.0 34 474 A G T 3 S+ 0 0 73 -5,-0.2 -1,-0.3 -4,-0.1 -2,-0.1 0.616 88.2 90.4 -75.7 -19.0 -0.9 5.8 9.6 35 475 A T S < S- 0 0 17 -3,-1.7 -19,-0.1 4,-0.0 -3,-0.0 -0.725 79.1-129.5 -88.2 121.5 2.2 7.5 10.8 36 476 A P >> - 0 0 61 0, 0.0 4,-3.0 0, 0.0 3,-1.9 -0.348 25.0-111.5 -70.3 156.2 4.7 8.4 8.1 37 477 A W H 3> S+ 0 0 11 -24,-0.5 4,-2.5 1,-0.3 5,-0.2 0.837 115.3 62.0 -58.8 -36.9 8.3 7.3 8.7 38 478 A I H 34 S+ 0 0 81 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.725 117.4 31.4 -58.7 -28.0 9.6 10.9 9.2 39 479 A E H X4 S+ 0 0 112 -3,-1.9 3,-1.3 2,-0.1 4,-0.3 0.801 114.4 60.7 -93.7 -46.0 7.2 11.2 12.2 40 480 A L H >< S+ 0 0 1 -4,-3.0 3,-1.9 1,-0.2 -2,-0.2 0.879 98.0 57.2 -49.0 -48.1 7.3 7.5 13.3 41 481 A I T 3< S+ 0 0 4 -4,-2.5 -1,-0.2 1,-0.3 29,-0.2 0.671 103.1 54.4 -69.1 -15.6 11.0 7.4 14.0 42 482 A Y T < S+ 0 0 99 -3,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.425 78.4 120.1 -96.1 -0.6 10.9 10.3 16.5 43 483 A L < - 0 0 27 -3,-1.9 2,-0.2 -4,-0.3 23,-0.0 -0.319 56.5-136.9 -62.4 144.5 8.2 8.8 18.7 44 484 A D > - 0 0 79 1,-0.1 4,-2.7 0, 0.0 5,-0.2 -0.479 23.7 -97.0-101.4 175.6 9.4 8.3 22.3 45 485 A D H > S+ 0 0 63 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.895 122.2 49.9 -55.3 -44.1 9.0 5.4 24.8 46 486 A E H > S+ 0 0 105 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.895 111.8 47.3 -66.5 -42.3 6.0 7.0 26.5 47 487 A T H > S+ 0 0 49 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.920 110.3 52.6 -67.6 -43.8 4.2 7.6 23.2 48 488 A L H <>S+ 0 0 0 -4,-2.7 5,-2.5 2,-0.2 3,-0.2 0.910 111.1 47.1 -55.1 -45.0 4.8 4.1 22.0 49 489 A E H ><5S+ 0 0 92 -4,-2.3 3,-1.7 1,-0.2 -2,-0.2 0.933 110.9 51.5 -64.6 -43.2 3.4 2.6 25.3 50 490 A K H 3<5S+ 0 0 158 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.749 106.8 55.6 -64.6 -25.2 0.4 5.0 25.0 51 491 A K T 3<5S- 0 0 80 -4,-1.6 -1,-0.3 -3,-0.2 -2,-0.2 0.404 131.8 -88.5 -88.8 1.8 -0.2 3.7 21.4 52 492 A G T < 5S+ 0 0 36 -3,-1.7 2,-1.8 -4,-0.2 -3,-0.2 0.496 86.9 129.4 109.0 1.9 -0.3 0.1 22.5 53 493 A V < + 0 0 1 -5,-2.5 -1,-0.2 1,-0.2 6,-0.1 -0.653 28.0 163.4 -86.2 81.9 3.3 -1.1 22.5 54 494 A L + 0 0 128 -2,-1.8 2,-0.6 -3,-0.1 -1,-0.2 0.717 41.1 90.2 -76.5 -26.5 2.9 -2.5 26.0 55 495 A A > - 0 0 49 -3,-0.2 4,-2.5 1,-0.2 3,-0.3 -0.662 67.0-148.0 -79.9 123.2 6.0 -4.7 26.0 56 496 A L H > S+ 0 0 83 -2,-0.6 4,-2.4 1,-0.2 5,-0.2 0.880 99.8 54.2 -49.5 -45.9 9.2 -3.1 27.2 57 497 A G H > S+ 0 0 51 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.888 108.1 48.8 -57.0 -42.9 11.2 -5.3 24.9 58 498 A A H > S+ 0 0 11 -3,-0.3 4,-2.7 2,-0.2 -2,-0.2 0.924 111.0 49.1 -67.8 -44.4 9.2 -4.2 21.9 59 499 A R H X S+ 0 0 20 -4,-2.5 4,-2.8 1,-0.2 -1,-0.2 0.911 112.0 50.2 -61.4 -40.0 9.5 -0.5 22.7 60 500 A R H X S+ 0 0 163 -4,-2.4 4,-2.0 -5,-0.2 -1,-0.2 0.885 110.9 48.2 -66.9 -38.4 13.3 -0.9 23.1 61 501 A K H X S+ 0 0 52 -4,-2.2 4,-2.6 2,-0.2 5,-0.2 0.928 113.4 47.5 -69.4 -43.2 13.6 -2.7 19.8 62 502 A L H X S+ 0 0 0 -4,-2.7 4,-3.3 1,-0.2 5,-0.2 0.959 112.3 49.0 -58.9 -49.2 11.5 -0.0 18.0 63 503 A L H X S+ 0 0 54 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.849 111.0 51.1 -64.8 -31.9 13.5 2.8 19.6 64 504 A K H X S+ 0 0 130 -4,-2.0 4,-1.6 2,-0.2 -1,-0.2 0.942 113.0 44.8 -66.5 -49.2 16.8 1.1 18.6 65 505 A A H X S+ 0 0 0 -4,-2.6 4,-2.1 1,-0.2 3,-0.2 0.938 112.5 52.4 -58.9 -48.1 15.6 0.8 15.0 66 506 A F H X S+ 0 0 2 -4,-3.3 4,-3.1 1,-0.2 -1,-0.2 0.915 105.3 55.6 -52.3 -47.9 14.4 4.4 15.1 67 507 A G H X S+ 0 0 36 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.879 105.8 50.7 -55.4 -41.3 17.8 5.6 16.3 68 508 A I H X S+ 0 0 35 -4,-1.6 4,-1.9 -3,-0.2 -1,-0.2 0.924 112.9 46.0 -62.8 -45.8 19.5 4.0 13.4 69 509 A V H X S+ 0 0 0 -4,-2.1 4,-3.1 1,-0.2 -2,-0.2 0.941 110.9 53.1 -64.1 -43.9 17.1 5.6 10.9 70 510 A I H X S+ 0 0 37 -4,-3.1 4,-3.2 1,-0.2 5,-0.2 0.905 105.9 54.3 -55.7 -43.7 17.4 9.0 12.7 71 511 A D H X S+ 0 0 75 -4,-2.2 4,-1.2 2,-0.2 -1,-0.2 0.933 112.6 42.1 -58.6 -49.4 21.2 8.9 12.4 72 512 A Y H <>S+ 0 0 54 -4,-1.9 5,-3.0 2,-0.2 3,-0.4 0.941 115.4 51.3 -63.6 -43.8 21.1 8.4 8.6 73 513 A K H ><5S+ 0 0 55 -4,-3.1 3,-2.1 1,-0.2 5,-0.2 0.939 108.0 50.0 -59.2 -48.7 18.3 11.0 8.3 74 514 A E H 3<5S+ 0 0 135 -4,-3.2 -1,-0.2 1,-0.3 -2,-0.2 0.746 111.0 49.8 -68.7 -20.9 20.2 13.7 10.2 75 515 A R T 3<5S- 0 0 166 -4,-1.2 -1,-0.3 -3,-0.4 -2,-0.2 0.336 116.3-117.2 -89.6 4.0 23.3 13.1 8.0 76 516 A D T < 5S+ 0 0 108 -3,-2.1 -3,-0.2 -4,-0.2 -2,-0.1 0.863 76.1 132.0 58.8 39.7 21.0 13.4 4.9 77 517 A L < + 0 0 106 -5,-3.0 2,-0.5 -6,-0.1 -4,-0.2 0.034 34.3 100.2-112.5 24.0 21.9 9.7 4.0 78 518 A I S S- 0 0 7 -6,-0.3 5,-0.1 -5,-0.2 -69,-0.1 -0.949 86.4-103.5-106.2 132.6 18.4 8.5 3.4 79 519 A D > - 0 0 100 -2,-0.5 3,-2.2 -71,-0.4 4,-0.3 -0.231 23.0-127.8 -57.1 135.9 17.5 8.3 -0.3 80 520 A R G > S+ 0 0 146 1,-0.3 3,-1.6 2,-0.2 -1,-0.2 0.756 104.7 74.1 -57.4 -24.7 15.3 11.2 -1.4 81 521 A S G 3 S+ 0 0 60 1,-0.3 -1,-0.3 2,-0.2 -2,-0.1 0.712 87.9 63.1 -60.6 -22.0 12.9 8.6 -2.9 82 522 A A G < 0 0 2 -3,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.715 360.0 360.0 -73.9 -22.3 11.8 7.8 0.7 83 523 A Y < 0 0 99 -3,-1.6 -1,-0.2 -4,-0.3 -2,-0.2 0.658 360.0 360.0 -83.5 360.0 10.5 11.2 1.4