==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 06-OCT-99 1D4U . COMPND 2 MOLECULE: NUCLEOTIDE EXCISION REPAIR PROTEIN XPA (XPA-MBD); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.W.BUCHKO,G.W.DAUGHDRILL,R.DE LORIMIER,S.RAO,N.G.ISERN, . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8623.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 45.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 9.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 20.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 201 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 86.2 -13.2 15.4 13.8 2 2 A E - 0 0 192 2,-0.0 2,-0.2 1,-0.0 0, 0.0 0.683 360.0-168.3 68.8 121.0 -14.0 11.7 14.0 3 3 A F - 0 0 175 2,-0.0 3,-0.0 1,-0.0 -1,-0.0 -0.641 26.0-177.4-128.1-171.0 -12.4 9.5 11.3 4 4 A D + 0 0 125 -2,-0.2 2,-0.2 0, 0.0 -1,-0.0 0.150 55.8 84.8 177.3 38.0 -12.6 6.0 9.9 5 5 A Y - 0 0 176 11,-0.0 2,-0.3 2,-0.0 11,-0.2 -0.774 50.4-155.9-137.9-178.9 -10.0 5.6 7.3 6 6 A V E -A 15 0A 42 9,-1.6 9,-1.2 -2,-0.2 2,-0.5 -0.992 13.7-131.2-160.5 154.8 -6.4 4.7 7.0 7 7 A I E -A 14 0A 82 -2,-0.3 7,-0.3 7,-0.3 21,-0.1 -0.941 36.3-107.9-115.8 128.6 -3.4 5.1 4.7 8 8 A C > - 0 0 2 5,-1.3 4,-0.9 -2,-0.5 5,-0.2 -0.274 23.6-154.7 -51.4 124.3 -1.2 2.1 3.7 9 9 A E T 4 S+ 0 0 167 3,-0.2 -1,-0.2 1,-0.2 -2,-0.0 0.709 87.4 67.1 -77.8 -17.5 2.0 2.6 5.6 10 10 A E T 4 S- 0 0 118 1,-0.1 -1,-0.2 3,-0.1 -2,-0.1 0.986 134.1 -13.9 -66.8 -57.4 3.9 0.5 3.0 11 11 A C T 4 S- 0 0 75 2,-0.0 -2,-0.2 0, 0.0 -1,-0.1 0.524 103.7 -99.1-121.5 -14.7 3.5 3.0 0.1 12 12 A G < + 0 0 45 -4,-0.9 2,-0.3 1,-0.2 -3,-0.2 0.808 56.7 160.8 94.0 87.8 0.8 5.4 1.5 13 13 A K - 0 0 88 -5,-0.2 -5,-1.3 15,-0.0 -1,-0.2 -0.775 34.1-134.2-145.1 100.3 -2.7 4.6 0.2 14 14 A E E +A 7 0A 120 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.3 -0.010 51.4 120.2 -44.5 157.2 -5.8 5.8 1.9 15 15 A F E -A 6 0A 71 -9,-1.2 -9,-1.6 1,-0.1 14,-0.1 -0.982 51.7-138.2 169.7-161.6 -8.5 3.1 2.3 16 16 A M S S- 0 0 91 -2,-0.3 2,-0.3 -11,-0.2 -1,-0.1 0.367 76.9 -6.0-158.0 -35.6 -10.5 1.2 5.0 17 17 A D + 0 0 62 -11,-0.1 5,-0.2 6,-0.0 -1,-0.1 -0.869 60.2 143.1-170.4 134.1 -10.7 -2.6 4.1 18 18 A S S S- 0 0 23 8,-0.3 10,-0.1 -2,-0.3 11,-0.1 0.059 76.1 -41.3-139.9-105.4 -9.6 -4.7 1.1 19 19 A Y S S+ 0 0 86 8,-0.2 4,-0.3 3,-0.1 9,-0.1 0.681 144.0 22.3-107.2 -26.1 -8.2 -8.3 1.1 20 20 A L S >>S+ 0 0 2 7,-0.3 6,-2.3 2,-0.1 5,-1.1 0.704 129.2 46.1-108.0 -32.2 -5.9 -7.8 4.1 21 21 A M T 45S+ 0 0 45 6,-0.5 7,-0.1 4,-0.2 -2,-0.1 0.336 115.0 50.6 -91.7 7.8 -7.7 -4.8 5.7 22 22 A D T 45S+ 0 0 65 -5,-0.2 -1,-0.2 4,-0.2 -3,-0.1 0.695 133.2 2.7-112.7 -34.2 -11.0 -6.6 5.2 23 23 A H T 45S+ 0 0 112 -4,-0.3 -2,-0.2 3,-0.2 46,-0.1 -0.107 128.1 51.7-146.6 42.5 -10.3 -10.0 6.7 24 24 A F T <5S- 0 0 9 -4,-0.6 43,-0.5 2,-0.1 -3,-0.2 0.487 96.9-111.4-147.0 -33.1 -6.7 -9.9 8.1 25 25 A D S - 0 0 0 -14,-0.1 2,-1.0 -22,-0.1 4,-0.8 -0.862 30.9 -76.0-150.7-174.9 -4.2 -1.5 -0.4 30 30 A D T 4 S+ 0 0 88 -2,-0.3 -2,-0.1 1,-0.2 0, 0.0 -0.141 118.5 62.8 -83.9 44.6 -4.8 -2.9 -3.9 31 31 A D T 4 S+ 0 0 83 -2,-1.0 -1,-0.2 2,-0.1 -3,-0.0 0.570 92.2 52.7-132.6 -44.5 -1.3 -1.8 -5.0 32 32 A C T 4 S+ 0 0 43 -3,-0.3 -2,-0.1 2,-0.0 7,-0.1 0.951 79.0 157.3 -62.8 -45.7 1.2 -3.7 -2.9 33 33 A R < - 0 0 122 -4,-0.8 -2,-0.1 1,-0.1 -4,-0.0 0.088 31.7-155.1 47.1-169.6 -0.5 -7.0 -3.8 34 34 A D S S+ 0 0 60 53,-0.0 -1,-0.1 7,-0.0 -2,-0.0 0.268 82.2 52.0-170.1 -33.4 1.7 -10.2 -3.5 35 35 A A S S- 0 0 31 1,-0.0 -2,-0.1 0, 0.0 6,-0.0 0.377 101.8-121.1 -98.1 6.5 0.4 -12.9 -5.9 36 36 A D S S+ 0 0 128 1,-0.2 -3,-0.0 2,-0.0 -1,-0.0 0.285 107.5 35.8 75.5 -16.5 0.4 -10.5 -8.8 37 37 A D S S- 0 0 142 3,-0.0 -1,-0.2 0, 0.0 -4,-0.1 0.350 143.7 -12.5-143.0 -4.1 -3.3 -11.1 -9.2 38 38 A K S S- 0 0 111 2,-0.1 3,-0.2 -19,-0.0 -5,-0.1 0.358 70.5-125.7-173.7 -23.5 -4.7 -11.5 -5.7 39 39 A H - 0 0 11 1,-0.2 47,-0.5 -7,-0.1 48,-0.3 0.850 36.6-152.5 63.1 29.7 -1.9 -12.0 -3.0 40 40 A K - 0 0 97 46,-0.1 -1,-0.2 45,-0.1 -2,-0.1 -0.028 14.3-124.0 -35.8 120.0 -3.8 -15.2 -2.0 41 41 A L - 0 0 35 -3,-0.2 2,-0.4 45,-0.1 44,-0.2 0.098 21.2-123.9 -58.7-176.1 -2.9 -15.6 1.7 42 42 A I E -B 84 0B 14 42,-1.9 42,-1.7 3,-0.0 5,-0.2 -0.992 27.2 -97.6-138.3 130.9 -1.3 -18.9 2.8 43 43 A T E > -B 83 0B 28 -2,-0.4 4,-1.2 40,-0.2 40,-0.3 -0.111 32.4-126.7 -43.4 135.7 -2.5 -21.3 5.5 44 44 A K H >>S+ 0 0 65 38,-1.9 4,-1.4 1,-0.2 5,-0.6 0.827 110.8 54.3 -59.2 -27.3 -0.6 -20.5 8.8 45 45 A T H 4>S+ 0 0 81 37,-0.5 5,-0.9 1,-0.2 4,-0.2 0.951 116.2 34.0 -73.2 -47.9 0.3 -24.2 8.9 46 46 A E H 45S+ 0 0 88 3,-0.2 -1,-0.2 1,-0.1 -2,-0.2 0.471 115.6 64.0 -85.3 0.6 1.8 -24.3 5.4 47 47 A A H X5S+ 0 0 0 -4,-1.2 4,-0.8 -5,-0.2 -3,-0.2 0.941 119.6 9.7 -87.2 -62.0 3.1 -20.7 5.8 48 48 A K T <>S+ 0 0 6 -4,-1.4 5,-1.6 2,-0.2 4,-0.3 0.959 129.7 50.6 -83.7 -62.1 5.6 -20.9 8.7 49 49 A Q T >4> S+ 0 0 48 3,-0.1 4,-1.0 2,-0.1 3,-1.0 0.762 104.5 41.3-110.5 -56.8 10.0 -15.8 15.2 58 58 A L T 34 S+ 0 0 12 1,-0.3 7,-0.2 2,-0.2 4,-0.1 0.552 124.2 43.0 -72.4 -3.8 7.0 -13.7 14.3 59 59 A E T 34 S+ 0 0 135 3,-0.1 -1,-0.3 2,-0.1 -2,-0.1 0.364 99.0 73.3-118.5 -1.0 6.5 -13.2 18.0 60 60 A K T <4 S+ 0 0 166 -3,-1.0 -2,-0.2 1,-0.1 -3,-0.1 0.822 120.2 10.9 -82.8 -30.9 10.1 -12.6 18.8 61 61 A R S < S- 0 0 201 -4,-1.0 -3,-0.1 2,-0.0 -2,-0.1 0.651 96.2-129.0-116.7 -29.2 10.1 -9.2 17.2 62 62 A E - 0 0 169 -5,-0.4 -3,-0.1 -4,-0.1 -4,-0.1 0.988 34.3-166.2 75.4 64.1 6.4 -8.5 16.7 63 63 A P - 0 0 24 0, 0.0 2,-1.1 0, 0.0 -5,-0.0 -0.152 37.0 -92.1 -75.6 173.3 6.4 -7.4 13.1 64 64 A P S S+ 0 0 78 0, 0.0 2,-0.4 0, 0.0 24,-0.1 -0.172 82.7 127.3 -80.4 42.0 3.5 -5.8 11.2 65 65 A L - 0 0 13 -2,-1.1 2,-0.3 -7,-0.2 -39,-0.0 -0.854 36.6-174.0-104.0 134.7 2.1 -9.1 10.1 66 66 A K - 0 0 72 -2,-0.4 19,-1.8 0, 0.0 2,-0.3 -0.774 5.5-157.7-121.5 168.4 -1.5 -10.0 10.7 67 67 A F E -C 84 0B 95 -43,-0.5 17,-0.2 -2,-0.3 2,-0.2 -0.944 11.4-130.6-140.8 164.6 -3.6 -13.2 10.1 68 68 A I E -C 83 0B 31 15,-0.9 15,-1.7 -2,-0.3 2,-0.2 -0.574 17.2-171.2-108.3 175.2 -7.3 -14.2 9.7 69 69 A V E +C 82 0B 60 13,-0.2 2,-0.3 -2,-0.2 13,-0.2 -0.581 38.2 73.7-171.6 101.9 -9.1 -16.9 11.5 70 70 A K S S- 0 0 153 11,-1.4 -2,-0.0 -2,-0.2 10,-0.0 -0.980 83.9 -27.7 172.6-177.2 -12.6 -18.2 10.8 71 71 A K S S- 0 0 145 -2,-0.3 9,-0.1 1,-0.1 6,-0.1 -0.203 78.5 -95.2 -53.2 144.1 -14.7 -20.3 8.3 72 72 A N - 0 0 13 6,-0.2 -1,-0.1 7,-0.2 4,-0.0 -0.361 24.2-144.4 -64.1 143.9 -13.1 -20.3 4.9 73 73 A P S S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.772 82.0 59.8 -79.5 -30.3 -14.5 -17.7 2.5 74 74 A H S S- 0 0 113 1,-0.2 -2,-0.0 2,-0.1 0, 0.0 -0.150 110.6 -53.8 -87.1-171.3 -14.2 -20.0 -0.6 75 75 A H S S+ 0 0 172 2,-0.0 -1,-0.2 -2,-0.0 -3,-0.0 0.013 110.6 47.4 -54.8 172.5 -15.9 -23.4 -1.1 76 76 A S - 0 0 63 1,-0.2 2,-0.3 -3,-0.1 -2,-0.1 0.779 64.9-163.7 58.6 115.0 -15.3 -26.0 1.6 77 77 A Q + 0 0 126 -6,-0.1 -1,-0.2 -4,-0.1 -6,-0.1 -0.710 10.7 179.3-133.2 85.4 -15.8 -24.6 5.1 78 78 A W - 0 0 176 -2,-0.3 -6,-0.2 2,-0.1 3,-0.1 0.047 47.5 -75.6 -70.5-170.1 -14.4 -26.8 7.9 79 79 A G S S- 0 0 64 1,-0.1 -7,-0.2 -8,-0.1 2,-0.1 0.848 101.1 -12.8 -55.5-106.3 -14.6 -25.9 11.6 80 80 A D - 0 0 113 -9,-0.1 2,-0.3 -11,-0.0 -1,-0.1 -0.471 64.8-157.0 -93.4 169.8 -12.1 -23.1 12.3 81 81 A M - 0 0 46 -2,-0.1 -11,-1.4 -10,-0.1 2,-0.6 -0.920 5.0-155.4-151.4 122.2 -9.2 -22.0 9.9 82 82 A K E + C 0 69B 106 -2,-0.3 -38,-1.9 -13,-0.2 -37,-0.5 -0.854 23.3 171.2-100.9 122.1 -6.0 -20.2 10.8 83 83 A L E -BC 43 68B 6 -15,-1.7 -15,-0.9 -2,-0.6 2,-0.4 -0.884 17.6-155.4-126.8 160.8 -4.5 -18.2 7.9 84 84 A Y E -BC 42 67B 24 -42,-1.7 -42,-1.9 -2,-0.3 -17,-0.2 -0.997 37.0 -91.9-137.3 138.4 -1.6 -15.7 7.6 85 85 A L > - 0 0 1 -19,-1.8 4,-1.1 -2,-0.4 -45,-0.1 -0.132 33.0-146.9 -44.9 137.8 -1.0 -12.9 5.1 86 86 A K H > S+ 0 0 49 -47,-0.5 4,-1.9 2,-0.2 5,-0.2 0.937 91.8 53.2 -78.7 -47.2 1.1 -14.4 2.2 87 87 A L H >> S+ 0 0 20 -48,-0.3 4,-1.9 1,-0.2 3,-0.9 0.974 115.3 39.7 -51.9 -59.8 3.2 -11.3 1.4 88 88 A Q H 3> S+ 0 0 15 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.901 110.9 59.8 -59.3 -37.6 4.3 -10.7 4.9 89 89 A I H 3X S+ 0 0 2 -4,-1.1 4,-2.1 1,-0.2 -1,-0.3 0.849 106.0 49.4 -60.4 -29.4 4.8 -14.5 5.3 90 90 A V H S+ 0 0 0 -4,-2.1 4,-1.7 1,-0.2 5,-1.3 0.872 114.3 38.6 -44.7 -35.8 10.7 -16.8 5.0 94 94 A L H <5S+ 0 0 60 -4,-1.7 -1,-0.2 4,-0.3 -2,-0.2 0.945 104.9 63.2 -81.5 -51.9 13.6 -14.7 3.7 95 95 A E H <5S+ 0 0 92 -4,-1.9 -2,-0.2 -5,-0.3 -1,-0.2 0.841 116.6 36.4 -42.0 -31.0 14.5 -12.9 6.9 96 96 A V H <5S+ 0 0 61 -4,-2.3 -2,-0.2 -5,-0.1 -1,-0.2 0.929 145.9 0.2 -86.7 -74.1 15.2 -16.4 8.2 97 97 A W T <5S- 0 0 96 -4,-1.7 -3,-0.2 -5,-0.2 -2,-0.1 0.862 94.9-123.5 -85.3 -37.1 16.8 -18.3 5.3 98 98 A G S > S- 0 0 52 -6,-0.6 4,-1.2 -5,-0.2 3,-1.0 -0.923 74.8-116.7-174.2 148.2 14.6 -17.1 0.1 100 100 A Q H 3> S+ 0 0 90 -2,-0.3 4,-2.2 1,-0.3 5,-0.2 0.713 118.7 59.3 -65.3 -14.1 11.9 -19.8 -0.5 101 101 A E H 3> S+ 0 0 123 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.772 100.1 53.1 -85.1 -24.1 14.6 -21.5 -2.5 102 102 A A H <> S+ 0 0 33 -3,-1.0 4,-1.1 2,-0.2 -2,-0.2 0.762 112.9 47.1 -79.2 -21.9 16.9 -21.7 0.6 103 103 A L H X S+ 0 0 6 -4,-1.2 4,-2.3 2,-0.2 5,-0.4 0.958 110.4 47.1 -80.7 -59.8 14.1 -23.3 2.4 104 104 A E H X S+ 0 0 73 -4,-2.2 4,-1.3 1,-0.3 -2,-0.2 0.881 117.8 46.7 -50.3 -35.3 13.1 -25.9 -0.2 105 105 A E H X S+ 0 0 104 -4,-1.3 4,-1.8 2,-0.2 5,-0.3 0.849 107.3 56.1 -77.2 -32.7 16.9 -26.6 -0.4 106 106 A A H X S+ 0 0 9 -4,-1.1 4,-1.5 -3,-0.3 -2,-0.2 0.853 112.1 42.8 -68.4 -31.3 17.2 -26.7 3.4 107 107 A K H < S+ 0 0 136 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.778 116.0 47.5 -85.3 -26.4 14.5 -29.4 3.6 108 108 A E H < S+ 0 0 122 -4,-1.3 -2,-0.2 -5,-0.4 -1,-0.2 0.749 116.0 45.5 -84.9 -22.4 15.9 -31.4 0.6 109 109 A V H < S+ 0 0 106 -4,-1.8 -2,-0.2 -5,-0.1 -3,-0.2 0.900 106.9 63.8 -85.0 -45.0 19.4 -31.2 2.0 110 110 A R < 0 0 174 -4,-1.5 -3,-0.0 -5,-0.3 0, 0.0 -0.133 360.0 360.0 -70.5 174.8 18.6 -32.1 5.6 111 111 A Q 0 0 260 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.961 360.0 360.0 -83.8 360.0 17.2 -35.6 6.5