==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 14-OCT-99 1D6K . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L25; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.STOLDT,J.WOHNERT,O.OHLENSCHLAGER,M.GORLACH,L.R.BROWN . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5831.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 28.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 144 0, 0.0 60,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 145.0 -32.8 21.9 13.9 2 2 A F + 0 0 41 58,-0.3 59,-0.1 53,-0.1 54,-0.0 0.993 360.0 173.8 -62.0 -68.3 -30.0 19.8 12.3 3 3 A T - 0 0 33 1,-0.2 2,-1.1 57,-0.1 60,-0.2 0.969 23.9-146.7 54.3 103.3 -28.6 18.1 15.5 4 4 A I - 0 0 0 58,-0.2 2,-0.2 38,-0.0 -1,-0.2 -0.726 13.0-146.3-104.7 86.0 -25.9 15.4 14.8 5 5 A N + 0 0 79 -2,-1.1 38,-0.6 58,-0.2 60,-0.2 -0.384 36.0 151.8 -61.0 119.4 -26.4 12.7 17.4 6 6 A A E -Ab 42 65A 10 58,-0.8 60,-2.3 -2,-0.2 2,-0.3 -0.411 37.4-130.7-124.3-162.2 -22.9 11.3 18.2 7 7 A E E -A 41 0A 63 34,-0.6 34,-3.1 58,-0.3 58,-0.1 -0.901 35.0 -99.2-156.3 140.6 -21.2 9.7 21.2 8 8 A V E -A 40 0A 80 -2,-0.3 2,-0.3 32,-0.2 32,-0.3 -0.363 45.1-176.4 -64.5 142.2 -17.7 10.7 22.7 9 9 A R + 0 0 16 30,-2.4 30,-0.4 1,-0.1 -1,-0.0 -0.994 32.5 172.8-145.1 151.9 -14.7 8.6 21.6 10 10 A K + 0 0 138 -2,-0.3 3,-0.5 28,-0.1 -1,-0.1 0.338 62.9 96.6-133.5 -3.3 -11.0 8.2 22.2 11 11 A E > > + 0 0 81 1,-0.2 5,-2.6 4,-0.1 3,-1.2 0.193 44.6 127.1 -72.9 13.6 -10.2 5.0 20.3 12 12 A Q T 3 5 + 0 0 68 1,-0.3 5,-0.3 3,-0.2 -1,-0.2 0.718 43.9 88.9 -48.9 -32.7 -9.0 7.1 17.3 13 13 A G T 3 5S- 0 0 80 -3,-0.5 -1,-0.3 1,-0.2 -2,-0.1 0.392 127.6 -69.6 -50.4 -5.4 -5.6 5.3 17.0 14 14 A K T <>5S+ 0 0 156 -3,-1.2 4,-1.7 0, 0.0 5,-0.2 -0.247 124.2 89.4 144.2 -27.8 -7.4 2.7 14.7 15 15 A G H >5S+ 0 0 40 -4,-0.4 4,-1.0 1,-0.2 -3,-0.2 0.861 97.4 41.4 -55.4 -40.0 -9.8 0.9 17.1 16 16 A A H >> S+ 0 0 45 -6,-0.4 4,-1.1 -5,-0.3 -2,-0.2 0.788 110.9 42.9 -60.3 -24.6 -11.7 3.7 12.7 18 18 A R H 3< S+ 0 0 151 -4,-1.7 4,-0.5 2,-0.2 -1,-0.3 0.692 116.1 45.1 -94.0 -23.7 -12.6 -0.1 12.5 19 19 A R H <>S+ 0 0 0 -4,-2.8 5,-2.0 1,-0.2 3,-1.7 0.976 115.9 42.0 -62.2 -56.2 -17.2 3.0 13.1 21 21 A R G ><5S+ 0 0 165 -4,-1.1 3,-0.8 -5,-0.4 -1,-0.2 0.802 107.9 64.1 -60.2 -27.6 -16.6 1.6 9.5 22 22 A A G 345S+ 0 0 62 -4,-0.5 -1,-0.3 1,-0.2 -2,-0.2 0.682 115.6 28.8 -70.0 -15.6 -17.9 -1.7 10.8 23 23 A A G <<5S- 0 0 63 -3,-1.7 -1,-0.2 -4,-0.7 -2,-0.2 0.132 115.1-104.2-127.2 16.3 -21.3 -0.1 11.5 24 24 A N T < 5S+ 0 0 114 -3,-0.8 20,-1.5 -4,-0.3 21,-0.5 0.608 82.5 129.3 63.3 14.7 -21.5 2.6 8.8 25 25 A K E < -C 43 0A 46 -5,-2.0 -1,-0.2 -6,-0.3 18,-0.2 -0.329 44.5-154.0 -83.5 176.5 -20.8 5.2 11.5 26 26 A F E -C 42 0A 11 16,-2.7 16,-1.8 -2,-0.1 21,-0.1 -0.974 13.5-106.6-164.4 129.9 -17.9 7.6 10.9 27 27 A P E +C 41 0A 29 0, 0.0 62,-0.6 0, 0.0 2,-0.3 -0.284 35.4 168.7 -70.6 156.9 -15.5 9.7 13.1 28 28 A A E -Cd 40 89A 0 12,-1.3 12,-1.1 60,-0.2 2,-0.3 -0.894 19.4-137.6-144.4-178.8 -15.5 13.4 13.7 29 29 A I E -Cd 39 90A 32 60,-0.9 62,-1.6 10,-0.3 2,-0.4 -0.941 6.4-148.6-139.7 161.3 -13.9 16.1 16.0 30 30 A I E +Cd 38 91A 0 8,-0.5 8,-1.0 -2,-0.3 62,-0.2 -0.903 41.4 161.4-131.7 92.6 -15.1 19.2 17.9 31 31 A Y E + d 0 92A 79 60,-2.6 62,-2.2 -2,-0.4 5,-0.0 -0.382 32.9 72.0-115.8-177.4 -12.1 21.6 18.0 32 32 A G + 0 0 58 60,-0.2 -1,-0.1 -2,-0.1 60,-0.1 0.910 64.3 129.2 73.7 43.2 -11.0 25.2 18.6 33 33 A G - 0 0 37 -3,-0.1 -2,-0.1 59,-0.1 59,-0.0 0.784 64.8-123.1 -83.5-103.5 -11.6 25.0 22.3 34 34 A K S S+ 0 0 203 2,-0.0 -3,-0.0 3,-0.0 -2,-0.0 0.038 103.2 39.1 178.1 -29.0 -8.7 26.3 24.4 35 35 A E S S- 0 0 206 1,-0.3 -3,-0.0 2,-0.0 0, 0.0 0.862 128.6 -52.5 -89.2 -71.4 -7.9 23.3 26.6 36 36 A A - 0 0 66 1,-0.1 -1,-0.3 -5,-0.0 -2,-0.0 -0.977 51.9-100.3-161.5 163.9 -8.5 20.6 24.0 37 37 A P - 0 0 59 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 0.221 28.5-125.7 -66.1-168.9 -11.0 19.2 21.4 38 38 A L E - C 0 30A 42 -8,-1.0 -8,-0.5 2,-0.0 2,-0.3 -0.840 9.2-147.3-153.9 107.6 -13.5 16.3 21.5 39 39 A A E - C 0 29A 5 -30,-0.4 -30,-2.4 -2,-0.3 2,-0.3 -0.599 21.3-171.4 -75.2 138.5 -13.7 13.4 19.1 40 40 A I E -AC 8 28A 0 -12,-1.1 -12,-1.3 -32,-0.3 2,-0.5 -0.995 20.8-133.5-138.3 132.9 -17.3 12.0 18.6 41 41 A E E +AC 7 27A 11 -34,-3.1 -34,-0.6 -2,-0.3 2,-0.3 -0.814 39.2 163.7 -83.6 121.8 -18.6 8.9 16.8 42 42 A L E -AC 6 26A 0 -16,-1.8 -16,-2.7 -2,-0.5 2,-0.3 -0.862 42.0 -82.2-137.4 170.4 -21.6 9.7 14.5 43 43 A D E > - C 0 25A 56 -38,-0.6 4,-2.1 -2,-0.3 -18,-0.2 -0.573 26.2-153.2 -74.7 130.3 -23.6 8.3 11.6 44 44 A H H > S+ 0 0 16 -20,-1.5 4,-2.8 -2,-0.3 -1,-0.1 0.927 96.3 50.7 -65.9 -50.8 -22.2 8.8 8.2 45 45 A D H > S+ 0 0 114 -21,-0.5 4,-1.3 2,-0.2 -1,-0.2 0.827 113.1 48.8 -67.8 -28.6 -25.6 8.7 6.4 46 46 A K H >> S+ 0 0 73 2,-0.2 4,-1.0 1,-0.1 3,-1.0 0.995 114.1 41.6 -59.4 -77.8 -26.9 11.3 8.9 47 47 A V H 3X S+ 0 0 0 -4,-2.1 4,-2.5 1,-0.3 5,-0.3 0.740 107.3 65.7 -54.3 -27.7 -24.0 13.8 8.6 48 48 A M H 3X S+ 0 0 36 -4,-2.8 4,-1.0 1,-0.2 -1,-0.3 0.975 105.8 41.2 -47.0 -65.1 -24.0 13.2 4.8 49 49 A N H << S+ 0 0 100 -4,-1.3 -1,-0.2 -3,-1.0 -2,-0.2 0.709 116.0 55.1 -55.0 -23.1 -27.5 14.8 4.7 50 50 A M H >< S+ 0 0 17 -4,-1.0 3,-1.9 1,-0.2 6,-0.4 0.988 111.1 36.1 -85.0 -65.3 -26.3 17.5 7.1 51 51 A Q H 3< S+ 0 0 8 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.583 99.6 86.6 -61.5 -7.8 -23.2 19.0 5.5 52 52 A A T 3< S+ 0 0 60 -4,-1.0 2,-0.3 -5,-0.3 -1,-0.3 0.465 88.3 54.6 -74.2 -2.4 -25.1 18.4 2.2 53 53 A K S X S- 0 0 67 -3,-1.9 3,-1.1 1,-0.1 4,-0.4 -0.948 85.1-129.7-123.2 157.9 -26.7 21.9 2.9 54 54 A A T >> S+ 0 0 49 -2,-0.3 4,-2.7 1,-0.3 3,-0.9 0.789 102.8 74.2 -74.0 -25.3 -24.8 25.1 3.5 55 55 A E H 3> S+ 0 0 101 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.701 89.8 62.9 -52.9 -25.6 -26.8 25.8 6.6 56 56 A F H <4 S+ 0 0 0 -3,-1.1 18,-1.1 -6,-0.4 -1,-0.2 0.863 115.1 26.2 -74.6 -39.9 -24.7 23.1 8.3 57 57 A Y H <4 S+ 0 0 139 -3,-0.9 -2,-0.2 -4,-0.4 -1,-0.2 0.734 125.2 50.0 -91.3 -28.4 -21.4 24.8 7.9 58 58 A S H < S+ 0 0 87 -4,-2.7 2,-0.3 2,-0.1 -3,-0.2 0.714 119.0 36.0 -83.0 -23.4 -22.8 28.4 7.9 59 59 A E S < S- 0 0 108 -4,-1.4 15,-0.4 -5,-0.3 2,-0.1 -0.840 96.2 -88.8-128.7 162.3 -24.9 27.8 11.0 60 60 A V - 0 0 43 -2,-0.3 -58,-0.3 13,-0.1 2,-0.3 -0.381 31.7-155.0 -74.1 150.8 -24.4 25.8 14.2 61 61 A L E - E 0 72A 0 11,-3.2 11,-2.1 -59,-0.1 2,-0.7 -0.833 16.6-126.4-117.4 158.2 -25.3 22.1 14.7 62 62 A T E - E 0 71A 9 -2,-0.3 2,-0.8 9,-0.2 9,-0.2 -0.875 16.7-156.7-113.5 99.0 -26.1 20.3 18.1 63 63 A I E - E 0 70A 0 7,-3.0 7,-2.4 -2,-0.7 2,-1.3 -0.674 5.3-157.9 -75.6 110.0 -24.0 17.1 18.6 64 64 A V E - E 0 69A 13 -2,-0.8 2,-1.0 5,-0.2 -58,-0.8 -0.735 8.3-165.2 -92.7 84.7 -26.0 15.0 21.0 65 65 A V E > S-bE 6 68A 7 3,-2.4 3,-1.7 -2,-1.3 -58,-0.3 -0.668 76.5 -34.8 -76.3 97.3 -23.1 12.8 22.4 66 66 A D T 3 S- 0 0 119 -60,-2.3 -1,-0.3 -2,-1.0 -59,-0.1 0.802 130.8 -38.5 56.0 30.0 -25.0 10.0 24.1 67 67 A G T 3 S+ 0 0 53 -3,-0.3 2,-0.5 1,-0.3 -1,-0.3 0.351 113.3 117.9 103.4 -2.8 -27.7 12.6 25.1 68 68 A K E < -E 65 0A 106 -3,-1.7 -3,-2.4 2,-0.0 2,-0.6 -0.879 60.5-136.7-101.8 127.2 -25.4 15.6 25.9 69 69 A E E -E 64 0A 140 -2,-0.5 2,-0.5 -5,-0.3 -5,-0.2 -0.743 23.1-176.1-102.8 109.6 -26.0 18.5 23.5 70 70 A I E -E 63 0A 28 -7,-2.4 -7,-3.0 -2,-0.6 2,-0.5 -0.911 18.6-139.4-114.8 125.8 -22.9 20.3 22.1 71 71 A K E +E 62 0A 88 -2,-0.5 23,-1.1 23,-0.3 2,-0.3 -0.721 39.1 145.4 -87.5 124.8 -23.0 23.4 19.9 72 72 A V E -EF 61 93A 0 -11,-2.1 -11,-3.2 -2,-0.5 2,-0.4 -0.973 36.1-139.1-152.3 159.6 -20.5 23.4 17.0 73 73 A K E - F 0 92A 73 19,-1.9 19,-2.3 -2,-0.3 -16,-0.2 -0.988 31.5-107.7-128.8 135.0 -20.2 24.5 13.3 74 74 A A E + F 0 91A 5 -18,-1.1 17,-0.2 -15,-0.4 3,-0.1 -0.329 40.4 165.0 -66.5 141.0 -18.5 22.6 10.5 75 75 A Q E S+ 0 0 119 15,-1.0 2,-0.2 1,-0.2 -1,-0.1 0.575 70.5 19.2-135.6 -26.3 -15.2 24.0 9.4 76 76 A D E + F 0 90A 64 14,-0.5 14,-1.4 2,-0.0 2,-0.4 -0.772 62.4 176.6-153.6 97.5 -13.6 21.2 7.3 77 77 A V E - F 0 89A 47 12,-0.2 2,-0.5 -2,-0.2 12,-0.2 -0.888 19.9-149.8 -91.3 139.9 -15.8 18.5 5.9 78 78 A Q E - F 0 88A 78 10,-3.1 9,-2.6 -2,-0.4 10,-1.1 -0.964 7.3-151.5-116.0 117.9 -13.8 16.1 3.7 79 79 A R E - F 0 86A 146 -2,-0.5 7,-0.3 7,-0.3 4,-0.0 -0.446 30.2 -92.4 -78.9 162.7 -15.6 14.4 0.7 80 80 A H - 0 0 56 5,-2.1 -1,-0.1 3,-0.4 7,-0.1 -0.352 37.9-114.3 -65.2 158.6 -14.7 11.0 -0.7 81 81 A P S S- 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.689 99.2 -13.0 -78.7 -20.2 -12.2 11.1 -3.6 82 82 A Y S S+ 0 0 219 1,-0.1 -2,-0.1 0, 0.0 -3,-0.0 0.420 118.6 82.3-145.2 -35.3 -14.6 9.8 -6.3 83 83 A K S S- 0 0 125 1,-0.1 2,-2.0 -4,-0.0 -3,-0.4 -0.422 87.9-110.0 -76.0 153.9 -17.7 8.3 -4.4 84 84 A P S S+ 0 0 118 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.385 88.6 95.1 -80.3 58.3 -20.5 10.6 -3.2 85 85 A K S S- 0 0 52 -2,-2.0 -5,-2.1 -37,-0.0 2,-0.3 -0.548 72.5-100.5-133.9-168.1 -19.4 10.0 0.4 86 86 A L E - F 0 79A 3 -7,-0.3 -7,-0.3 -2,-0.2 3,-0.1 -0.911 9.8-166.0-124.9 152.0 -17.3 11.6 3.2 87 87 A Q E S- 0 0 106 -9,-2.6 2,-0.3 1,-0.4 -8,-0.2 0.714 76.2 -32.8 -98.9 -34.9 -13.7 10.9 4.6 88 88 A H E - F 0 78A 41 -10,-1.1 -10,-3.1 -62,-0.1 -1,-0.4 -0.934 51.5-150.7-179.7 158.2 -14.1 13.0 7.8 89 89 A I E -dF 28 77A 0 -62,-0.6 -60,-0.9 -2,-0.3 2,-0.3 -0.991 7.2-166.9-141.9 146.0 -15.8 16.1 9.3 90 90 A D E -dF 29 76A 2 -14,-1.4 -15,-1.0 -2,-0.3 -14,-0.5 -0.852 2.7-161.9-121.2 165.5 -14.9 18.5 12.1 91 91 A F E -dF 30 74A 0 -62,-1.6 -60,-2.6 -2,-0.3 2,-0.4 -0.934 16.2-131.0-134.7 157.7 -16.9 21.1 13.9 92 92 A V E -dF 31 73A 28 -19,-2.3 -19,-1.9 -2,-0.3 2,-0.6 -0.926 40.8 -83.9-118.2 145.8 -15.6 24.1 16.0 93 93 A R E F 0 72A 107 -62,-2.2 -21,-0.3 -2,-0.4 -63,-0.0 -0.223 360.0 360.0 -53.9 92.4 -16.8 25.0 19.5 94 94 A A 0 0 86 -23,-1.1 -23,-0.3 -2,-0.6 -1,-0.0 -0.421 360.0 360.0 -74.7 360.0 -19.9 27.1 19.0