==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 25-OCT-99 1D8J . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5461.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 38.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A > 0 0 138 0, 0.0 2,-1.9 0, 0.0 3,-0.5 0.000 360.0 360.0 360.0 167.0 14.8 18.4 2.6 2 2 A L T 3 + 0 0 106 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.361 360.0 128.1 -82.2 57.7 11.0 18.4 1.9 3 3 A S T 3 + 0 0 114 -2,-1.9 -1,-0.2 1,-0.1 3,-0.1 0.833 68.4 51.5 -81.1 -35.9 10.9 22.3 2.0 4 4 A G S < S- 0 0 74 -3,-0.5 2,-0.3 1,-0.2 -2,-0.1 0.988 124.7 -58.7 -64.6 -62.1 9.1 22.6 -1.3 5 5 A S - 0 0 99 3,-0.0 2,-0.2 0, 0.0 -1,-0.2 -0.899 38.8-118.2-165.2-170.2 6.2 20.2 -0.6 6 6 A S S S+ 0 0 73 -2,-0.3 3,-0.1 -3,-0.1 -4,-0.0 -0.745 70.2 91.0-152.8 97.0 5.3 16.6 0.4 7 7 A G >> + 0 0 37 -2,-0.2 4,-2.3 1,-0.2 5,-0.8 0.359 49.7 102.5-152.0 -47.7 3.2 14.5 -2.0 8 8 A Y T 45S- 0 0 124 1,-0.2 2,-2.5 2,-0.2 -1,-0.2 -0.308 110.2 -19.0 -53.8 123.6 5.5 12.6 -4.4 9 9 A K T >5S+ 0 0 42 1,-0.2 4,-3.0 -3,-0.1 5,-0.2 -0.355 134.4 69.8 74.9 -59.9 5.6 8.9 -3.2 10 10 A F H >5S+ 0 0 89 -2,-2.5 4,-2.8 1,-0.2 -1,-0.2 0.914 99.0 45.0 -56.4 -51.9 4.4 9.9 0.3 11 11 A G H X5S+ 0 0 38 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.937 115.6 47.1 -59.4 -49.8 0.8 10.8 -0.7 12 12 A V H >S+ 0 0 62 -4,-3.1 5,-1.3 1,-0.2 4,-1.2 0.873 116.1 47.6 -59.2 -36.7 -10.7 -2.6 2.6 24 24 A H H <5S+ 0 0 27 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.896 108.7 55.4 -68.6 -41.8 -9.2 -4.7 5.5 25 25 A Q H <5S+ 0 0 135 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.910 105.7 49.9 -58.3 -48.3 -11.5 -3.0 8.0 26 26 A R H <5S- 0 0 172 -4,-2.3 -1,-0.2 2,-0.1 -2,-0.2 0.837 133.3 -81.4 -65.2 -33.4 -14.8 -3.9 6.2 27 27 A G T <5S+ 0 0 46 -4,-1.2 2,-2.6 -5,-0.2 3,-0.2 0.117 100.8 107.3 158.2 -31.0 -13.8 -7.6 5.8 28 28 A D < + 0 0 55 -5,-1.3 -3,-0.1 1,-0.2 -2,-0.1 -0.417 30.7 148.9 -76.0 70.2 -11.4 -8.1 2.9 29 29 A T + 0 0 74 -2,-2.6 45,-0.3 -5,-0.2 -1,-0.2 0.495 35.8 118.1 -79.6 -4.2 -8.3 -8.7 5.1 30 30 A H S S- 0 0 78 -3,-0.2 44,-0.2 1,-0.1 -3,-0.1 -0.185 75.3 -94.4 -61.9 155.7 -7.0 -10.9 2.3 31 31 A P - 0 0 36 0, 0.0 2,-0.3 0, 0.0 42,-0.3 -0.275 37.9-153.7 -67.4 158.5 -3.7 -10.0 0.5 32 32 A L B -A 72 0A 8 40,-2.5 40,-2.5 3,-0.0 -12,-0.0 -0.998 15.6-116.5-137.1 140.3 -3.7 -8.0 -2.7 33 33 A T > - 0 0 38 -2,-0.3 4,-1.5 38,-0.2 5,-0.1 -0.162 35.3-105.7 -64.7 167.6 -1.2 -7.9 -5.6 34 34 A L H > S+ 0 0 6 2,-0.2 4,-2.1 1,-0.2 3,-0.4 0.946 122.4 49.5 -60.5 -48.9 0.6 -4.6 -6.4 35 35 A D H > S+ 0 0 89 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.927 105.7 55.7 -56.7 -49.8 -1.6 -4.1 -9.5 36 36 A E H > S+ 0 0 89 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.846 110.0 48.1 -52.6 -36.1 -4.9 -4.8 -7.5 37 37 A I H X S+ 0 0 0 -4,-1.5 4,-1.9 -3,-0.4 -1,-0.2 0.920 104.5 58.8 -71.6 -45.3 -3.8 -2.0 -5.2 38 38 A L H X>S+ 0 0 0 -4,-2.1 5,-2.6 1,-0.2 4,-0.8 0.931 104.2 51.2 -48.0 -57.8 -2.9 0.5 -8.0 39 39 A D H ><5S+ 0 0 84 -4,-1.8 3,-1.8 1,-0.3 -1,-0.2 0.927 112.9 42.2 -46.0 -63.9 -6.5 0.5 -9.4 40 40 A E H 3<5S+ 0 0 90 -4,-1.2 -1,-0.3 1,-0.3 -2,-0.2 0.752 117.4 48.7 -59.9 -27.2 -8.3 1.1 -6.1 41 41 A T H 3<5S- 0 0 0 -4,-1.9 -1,-0.3 -3,-0.5 -2,-0.2 0.445 113.1-117.4 -93.3 -1.0 -5.7 3.8 -5.1 42 42 A Q T <<5S+ 0 0 129 -3,-1.8 -3,-0.2 -4,-0.8 -2,-0.1 0.890 81.7 119.1 66.6 41.2 -5.9 5.6 -8.6 43 43 A H < + 0 0 21 -5,-2.6 -4,-0.2 -6,-0.2 4,-0.2 -0.247 24.5 116.3-129.7 44.1 -2.2 4.8 -9.3 44 44 A L S S+ 0 0 84 -6,-0.3 3,-0.2 -5,-0.2 -5,-0.1 0.951 84.3 40.2 -76.7 -51.3 -2.5 2.6 -12.4 45 45 A D S S+ 0 0 159 1,-0.2 -1,-0.1 -7,-0.1 -2,-0.1 0.885 86.5 131.8 -61.1 -39.9 -0.6 5.0 -14.7 46 46 A I - 0 0 40 -4,-0.1 2,-0.2 1,-0.1 -1,-0.2 0.117 62.2-106.7 26.3-105.7 1.8 5.7 -11.7 47 47 A G > - 0 0 28 -3,-0.2 4,-3.0 -4,-0.2 5,-0.3 -0.678 18.2 -97.7 157.3 148.8 5.3 5.3 -13.3 48 48 A L H > S+ 0 0 143 1,-0.2 4,-2.7 -2,-0.2 5,-0.3 0.870 120.4 57.8 -53.9 -40.0 8.2 2.9 -13.3 49 49 A K H > S+ 0 0 137 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.963 115.9 31.8 -55.9 -58.9 10.0 4.9 -10.5 50 50 A Q H > S+ 0 0 33 2,-0.2 4,-3.1 1,-0.2 5,-0.3 0.949 117.5 55.9 -67.1 -50.1 7.1 4.7 -8.0 51 51 A K H X S+ 0 0 59 -4,-3.0 4,-1.8 1,-0.2 -2,-0.2 0.910 113.6 41.8 -46.0 -51.1 5.9 1.2 -9.1 52 52 A Q H X S+ 0 0 98 -4,-2.7 4,-2.9 -5,-0.3 -1,-0.2 0.931 113.3 52.6 -64.5 -47.4 9.4 -0.1 -8.5 53 53 A W H <>S+ 0 0 25 -4,-2.4 5,-2.0 -5,-0.3 4,-0.4 0.881 108.2 51.7 -56.6 -41.5 9.9 1.9 -5.2 54 54 A L H ><>S+ 0 0 0 -4,-3.1 5,-2.4 3,-0.2 3,-0.6 0.926 114.3 43.3 -61.1 -45.5 6.6 0.4 -3.9 55 55 A M H 3<5S+ 0 0 68 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.910 126.5 29.2 -66.8 -47.2 7.7 -3.1 -4.7 56 56 A T T 3<5S+ 0 0 94 -4,-2.9 -1,-0.2 -5,-0.1 -2,-0.2 -0.083 137.8 8.8-110.9 33.4 11.3 -2.8 -3.4 57 57 A E T X>5S+ 0 0 75 -3,-0.6 4,-2.3 -4,-0.4 3,-0.9 0.093 121.5 42.9-165.5 -67.4 10.9 -0.1 -0.6 58 58 A A H 3>< - 0 0 32 -4,-2.4 3,-0.9 -5,-0.4 -5,-0.0 -0.420 65.8-151.0 -60.8 120.7 6.2 -0.2 5.8 63 63 A P T 3 S+ 0 0 85 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.847 93.8 58.9 -63.2 -36.9 5.2 -2.0 9.1 64 64 A K T 3 S+ 0 0 29 10,-0.1 11,-2.1 2,-0.0 2,-0.7 0.712 92.5 81.2 -66.8 -20.5 1.5 -1.8 8.2 65 65 A I E < -B 74 0A 8 -3,-0.9 2,-0.5 9,-0.2 9,-0.2 -0.803 67.0-166.3 -92.5 117.2 2.2 -3.7 5.1 66 66 A E E -B 73 0A 66 7,-2.6 7,-2.6 -2,-0.7 2,-0.5 -0.912 13.4-141.8-106.6 122.6 2.4 -7.5 5.7 67 67 A V E +B 72 0A 78 -2,-0.5 5,-0.2 5,-0.2 4,-0.1 -0.735 38.4 148.9 -83.6 121.4 3.9 -9.7 3.0 68 68 A I + 0 0 92 3,-1.6 2,-1.8 -2,-0.5 -1,-0.1 0.522 69.4 11.2-116.0 -98.7 2.0 -13.0 2.9 69 69 A D S S- 0 0 111 1,-0.1 2,-0.5 0, 0.0 3,-0.1 -0.306 121.5 -78.0 -82.5 52.8 1.5 -15.0 -0.4 70 70 A G S S+ 0 0 58 -2,-1.8 -1,-0.1 1,-0.3 -3,-0.0 -0.010 116.5 98.3 76.8 -33.0 4.1 -12.8 -2.1 71 71 A K S S- 0 0 68 -2,-0.5 -3,-1.6 1,-0.1 2,-0.5 -0.148 83.2 -99.7 -77.8 176.5 1.2 -10.2 -2.4 72 72 A Y E +AB 32 67A 23 -40,-2.5 -40,-2.5 -5,-0.2 2,-0.2 -0.892 40.8 174.1-109.1 129.3 0.7 -7.3 0.1 73 73 A A E - B 0 66A 2 -7,-2.6 -7,-2.6 -2,-0.5 2,-0.3 -0.728 33.4-101.5-122.1 172.3 -1.8 -7.3 2.9 74 74 A F E - B 0 65A 16 -45,-0.3 -9,-0.2 -2,-0.2 -10,-0.1 -0.723 30.5-128.4 -97.1 148.1 -2.6 -5.0 5.8 75 75 A K + 0 0 23 -11,-2.1 5,-0.0 -2,-0.3 -10,-0.0 -0.862 34.8 162.0-104.0 107.0 -1.4 -5.7 9.4 76 76 A P >> + 0 0 52 0, 0.0 4,-2.8 0, 0.0 3,-0.7 0.920 51.5 87.8 -82.0 -52.4 -4.0 -5.7 12.1 77 77 A K T 34 S+ 0 0 148 1,-0.2 4,-0.1 2,-0.2 -2,-0.0 -0.024 98.7 4.0 -53.9 152.0 -2.1 -7.6 14.8 78 78 A Y T 34 S+ 0 0 169 1,-0.2 -1,-0.2 2,-0.1 3,-0.1 0.812 132.2 53.7 36.2 49.2 0.2 -5.9 17.4 79 79 A N T <4 S+ 0 0 95 -3,-0.7 2,-0.3 1,-0.5 -2,-0.2 0.199 106.1 34.2-164.6 -49.7 -0.8 -2.5 15.9 80 80 A V < 0 0 78 -4,-2.8 -1,-0.5 1,-0.1 -2,-0.1 -0.900 360.0 360.0-122.5 151.3 -4.6 -2.1 15.9 81 81 A R 0 0 313 -2,-0.3 -1,-0.1 -3,-0.1 -4,-0.0 0.544 360.0 360.0-127.1 360.0 -7.3 -3.3 18.3