==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 25-OCT-99 1D8K . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5802.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 69.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 40.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A >> 0 0 121 0, 0.0 4,-2.6 0, 0.0 3,-0.9 0.000 360.0 360.0 360.0 153.3 9.9 19.9 -0.6 2 2 A L H 3> + 0 0 156 1,-0.3 4,-1.5 2,-0.2 0, 0.0 0.928 360.0 52.7 -61.1 -46.7 6.5 21.5 -1.5 3 3 A S H 34 S+ 0 0 103 1,-0.2 4,-0.3 2,-0.2 -1,-0.3 0.622 114.5 45.4 -64.8 -12.7 6.5 19.8 -4.9 4 4 A G H X> S+ 0 0 10 -3,-0.9 4,-1.9 2,-0.1 3,-0.9 0.803 103.0 60.5 -96.5 -39.9 7.1 16.6 -3.0 5 5 A S H 3< S+ 0 0 91 -4,-2.6 -2,-0.2 1,-0.2 -3,-0.1 0.821 91.1 72.3 -57.2 -34.1 4.5 17.1 -0.2 6 6 A S T 3< S- 0 0 96 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.1 0.904 131.0 -75.9 -47.5 -49.5 1.8 17.2 -3.0 7 7 A G T <4 S+ 0 0 26 -3,-0.9 -2,-0.2 -4,-0.3 -1,-0.1 0.388 77.4 146.2 148.4 52.9 2.3 13.4 -3.5 8 8 A Y S < S- 0 0 152 -4,-1.9 -3,-0.1 3,-0.1 -4,-0.1 0.474 97.1 -33.7 -84.8 -3.6 5.5 12.6 -5.4 9 9 A K S > S+ 0 0 58 -5,-0.4 4,-2.4 -4,-0.1 5,-0.2 -0.007 139.6 59.6-177.6 -55.7 5.8 9.4 -3.4 10 10 A F H > S+ 0 0 132 -6,-0.3 4,-2.9 2,-0.2 5,-0.2 0.905 105.1 51.2 -61.8 -46.2 4.5 10.0 0.2 11 11 A G H > S+ 0 0 30 -7,-0.4 4,-2.5 2,-0.2 5,-0.2 0.934 111.5 47.6 -58.3 -49.0 1.0 10.9 -1.0 12 12 A V H > S+ 0 0 18 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.942 115.1 45.3 -57.1 -51.4 0.7 7.7 -3.1 13 13 A L H X S+ 0 0 27 -4,-2.4 4,-3.0 1,-0.2 -1,-0.2 0.890 111.8 52.6 -60.8 -42.2 2.0 5.5 -0.3 14 14 A A H X S+ 0 0 60 -4,-2.9 4,-2.6 1,-0.2 -1,-0.2 0.908 110.2 47.2 -62.1 -43.7 -0.3 7.2 2.2 15 15 A K H X S+ 0 0 106 -4,-2.5 4,-2.8 2,-0.2 -1,-0.2 0.882 113.1 50.0 -66.3 -37.7 -3.4 6.6 0.1 16 16 A I H X S+ 0 0 1 -4,-2.1 4,-3.1 -5,-0.2 5,-0.2 0.952 112.5 45.6 -64.0 -50.8 -2.3 3.0 -0.5 17 17 A V H X S+ 0 0 21 -4,-3.0 4,-2.5 1,-0.2 -2,-0.2 0.904 115.0 48.9 -58.6 -43.5 -1.8 2.4 3.3 18 18 A N H X S+ 0 0 90 -4,-2.6 4,-2.8 -5,-0.2 5,-0.2 0.944 114.0 45.0 -62.1 -49.9 -5.1 4.1 4.0 19 19 A Y H X S+ 0 0 26 -4,-2.8 4,-3.0 1,-0.2 5,-0.3 0.953 114.0 48.7 -58.6 -53.6 -7.0 2.1 1.4 20 20 A M H X S+ 0 0 8 -4,-3.1 4,-2.6 2,-0.2 -1,-0.2 0.889 114.0 48.4 -55.0 -42.8 -5.4 -1.2 2.5 21 21 A K H X S+ 0 0 66 -4,-2.5 4,-2.7 -5,-0.2 5,-0.2 0.989 113.0 44.5 -60.0 -63.9 -6.2 -0.4 6.1 22 22 A T H X S+ 0 0 53 -4,-2.8 4,-2.1 1,-0.2 -2,-0.2 0.868 116.2 48.1 -50.1 -43.8 -9.9 0.6 5.5 23 23 A R H X>S+ 0 0 43 -4,-3.0 4,-2.1 -5,-0.2 5,-1.2 0.936 113.7 46.2 -64.3 -46.2 -10.3 -2.5 3.2 24 24 A H H <5S+ 0 0 36 -4,-2.6 -2,-0.2 -5,-0.3 -1,-0.2 0.820 111.7 53.9 -63.8 -31.4 -8.7 -4.8 5.8 25 25 A Q H <5S+ 0 0 133 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.874 106.5 51.5 -70.6 -38.7 -10.9 -3.1 8.5 26 26 A R H <5S- 0 0 194 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.944 131.9 -85.4 -63.9 -50.1 -14.0 -3.9 6.5 27 27 A G T <5S+ 0 0 49 -4,-2.1 2,-2.4 -5,-0.1 3,-0.2 0.147 100.5 105.8 166.7 -28.6 -13.2 -7.6 6.1 28 28 A D < + 0 0 76 -5,-1.2 -3,-0.1 1,-0.2 -2,-0.1 -0.446 30.9 149.1 -76.6 71.5 -10.9 -8.0 3.1 29 29 A T + 0 0 75 -2,-2.4 45,-0.4 -5,-0.2 -1,-0.2 0.512 37.7 115.1 -80.0 -5.6 -7.8 -8.6 5.2 30 30 A H S S- 0 0 83 -3,-0.2 44,-0.2 1,-0.1 -3,-0.1 -0.190 75.7 -95.0 -64.1 157.2 -6.5 -10.9 2.3 31 31 A P - 0 0 36 0, 0.0 2,-0.3 0, 0.0 42,-0.3 -0.296 36.0-158.7 -70.1 158.3 -3.4 -9.9 0.3 32 32 A L B -A 72 0A 5 40,-2.4 40,-2.7 -2,-0.0 36,-0.1 -0.994 19.8-112.3-138.4 142.7 -3.6 -8.0 -3.0 33 33 A T > - 0 0 46 -2,-0.3 4,-1.6 38,-0.2 5,-0.1 -0.133 37.9-101.6 -64.5 169.2 -1.1 -7.8 -5.9 34 34 A L H >> S+ 0 0 15 1,-0.2 4,-2.1 2,-0.2 3,-0.7 0.971 122.7 44.5 -57.1 -58.9 0.6 -4.5 -6.7 35 35 A D H 3> S+ 0 0 80 1,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.868 107.5 59.5 -57.6 -39.9 -1.6 -3.6 -9.6 36 36 A E H 3> S+ 0 0 89 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.880 109.4 45.1 -56.0 -38.0 -4.8 -4.7 -7.7 37 37 A I H S+ 0 0 0 -4,-2.1 5,-2.7 1,-0.2 4,-1.1 0.909 102.4 58.0 -54.3 -47.8 -3.1 0.6 -7.8 39 39 A D H ><5S+ 0 0 100 -4,-2.4 3,-1.1 1,-0.2 5,-0.2 0.939 111.5 38.1 -49.2 -61.2 -6.5 0.3 -9.4 40 40 A E H 3<5S+ 0 0 85 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.846 118.0 49.9 -63.7 -36.0 -8.5 1.2 -6.3 41 41 A T H 3<5S- 0 0 1 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.578 112.3-122.6 -78.4 -8.5 -6.0 3.8 -5.2 42 42 A Q T <<5S+ 0 0 167 -4,-1.1 -3,-0.2 -3,-1.1 4,-0.1 0.929 78.2 120.5 66.2 47.1 -6.2 5.3 -8.7 43 43 A H < + 0 0 29 -5,-2.7 -4,-0.2 -8,-0.1 4,-0.2 -0.147 19.2 124.4-130.2 35.1 -2.5 4.9 -9.2 44 44 A L S S+ 0 0 94 -6,-0.4 3,-0.3 -5,-0.2 -5,-0.1 0.860 83.0 43.9 -66.5 -33.6 -2.4 2.6 -12.3 45 45 A D S S+ 0 0 153 1,-0.2 2,-2.0 -7,-0.1 -1,-0.2 0.987 77.9 130.7 -68.6 -60.5 -0.3 5.2 -14.2 46 46 A I S S- 0 0 18 -4,-0.1 -1,-0.2 -8,-0.1 -2,-0.1 -0.163 71.2 -99.4 46.0 -71.5 2.0 5.8 -11.1 47 47 A G > - 0 0 30 -2,-2.0 4,-3.1 -3,-0.3 5,-0.3 -0.166 21.0-102.2 127.5 136.7 5.4 5.4 -13.0 48 48 A L H > S+ 0 0 140 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.895 122.7 51.4 -53.0 -44.7 7.8 2.5 -13.2 49 49 A K H > S+ 0 0 161 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.916 114.2 43.1 -59.8 -45.6 10.1 4.1 -10.7 50 50 A Q H > S+ 0 0 37 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.954 114.9 48.0 -66.9 -51.6 7.3 4.6 -8.2 51 51 A K H X S+ 0 0 56 -4,-3.1 4,-2.4 1,-0.2 -2,-0.2 0.922 114.2 48.6 -54.5 -46.1 5.7 1.2 -8.7 52 52 A Q H X S+ 0 0 116 -4,-2.9 4,-2.2 -5,-0.3 5,-0.4 0.937 109.9 51.5 -59.1 -49.2 9.2 -0.3 -8.3 53 53 A W H X>S+ 0 0 28 -4,-2.5 4,-2.8 1,-0.2 5,-1.2 0.916 112.0 46.6 -54.6 -47.1 9.9 1.7 -5.2 54 54 A L H <>S+ 0 0 0 -4,-2.8 5,-2.3 3,-0.2 -1,-0.2 0.897 112.3 51.7 -61.5 -41.6 6.6 0.5 -3.7 55 55 A M H <5S+ 0 0 108 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.834 125.4 21.6 -66.9 -37.8 7.4 -3.1 -4.7 56 56 A T H <5S+ 0 0 97 -4,-2.2 -2,-0.2 -5,-0.1 -3,-0.2 0.671 137.4 19.1-106.8 -22.8 10.9 -3.3 -3.1 57 57 A E T >X5S+ 0 0 92 -4,-2.8 4,-2.5 -5,-0.4 3,-1.5 0.774 122.6 36.0-112.2 -73.3 10.9 -0.5 -0.4 58 58 A A H 3>< - 0 0 29 -4,-2.4 3,-1.8 -5,-0.4 -4,-0.0 -0.470 63.1-143.3 -64.6 124.2 6.3 -0.4 5.9 63 63 A P T 3 S+ 0 0 103 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.719 98.7 59.5 -62.3 -22.7 5.2 -1.8 9.4 64 64 A K T 3 S+ 0 0 63 10,-0.1 11,-1.3 2,-0.0 2,-0.3 0.224 97.2 78.2 -91.3 14.5 1.5 -1.7 8.2 65 65 A I E < -B 74 0A 12 -3,-1.8 2,-0.4 9,-0.3 9,-0.3 -0.953 57.7-165.1-126.8 145.3 2.3 -4.1 5.3 66 66 A E E -B 73 0A 75 7,-2.4 7,-3.0 -2,-0.3 2,-0.4 -0.973 17.9-139.0-131.2 115.3 2.7 -7.9 5.2 67 67 A V E +B 72 0A 75 -2,-0.4 2,-0.4 5,-0.2 5,-0.2 -0.617 29.2 173.1 -76.4 124.5 4.2 -9.6 2.2 68 68 A I E > -B 71 0A 77 3,-2.2 3,-1.1 -2,-0.4 -2,-0.1 -0.968 64.6 -20.3-139.4 119.9 2.4 -12.8 1.3 69 69 A D T 3 S- 0 0 130 -2,-0.4 2,-0.8 1,-0.3 3,-0.1 0.886 122.1 -58.6 52.1 44.6 2.9 -15.0 -1.8 70 70 A G T 3 S+ 0 0 53 1,-0.2 -1,-0.3 -37,-0.0 -3,-0.0 -0.060 124.0 101.3 78.9 -36.8 4.6 -12.1 -3.6 71 71 A K E < S- B 0 68A 71 -3,-1.1 -3,-2.2 -2,-0.8 2,-0.4 -0.089 74.8-116.6 -70.8 176.7 1.3 -10.1 -3.1 72 72 A Y E -AB 32 67A 16 -40,-2.7 -40,-2.4 -5,-0.2 -5,-0.2 -0.981 29.1-179.0-127.8 126.8 0.9 -7.4 -0.4 73 73 A A E - B 0 66A 3 -7,-3.0 -7,-2.4 -2,-0.4 2,-0.5 -0.597 34.1 -99.0-112.1 174.7 -1.5 -7.5 2.6 74 74 A F E - B 0 65A 16 -45,-0.4 -9,-0.3 -9,-0.3 -10,-0.1 -0.869 29.1-142.3-100.9 126.5 -2.1 -5.1 5.4 75 75 A K - 0 0 78 -11,-1.3 -54,-0.0 -2,-0.5 -51,-0.0 -0.787 19.9-129.1 -89.8 118.9 -0.5 -5.8 8.8 76 76 A P - 0 0 64 0, 0.0 -11,-0.1 0, 0.0 -1,-0.0 -0.316 10.3-132.4 -64.8 149.3 -2.7 -5.0 11.8 77 77 A K S S- 0 0 190 1,-0.1 3,-0.0 -13,-0.1 -2,-0.0 0.993 79.8 -42.9 -65.5 -63.9 -1.2 -2.8 14.5 78 78 A Y S S- 0 0 172 3,-0.0 -1,-0.1 -3,-0.0 3,-0.1 0.175 94.7 -87.1-153.8 12.1 -2.2 -4.8 17.5 79 79 A N - 0 0 85 1,-0.1 2,-1.9 0, 0.0 0, 0.0 0.400 48.0 -84.0 81.0 139.2 -5.9 -5.7 16.7 80 80 A V 0 0 133 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.549 360.0 360.0 -77.4 82.2 -8.9 -3.5 17.5 81 81 A R 0 0 246 -2,-1.9 -3,-0.0 -3,-0.1 0, 0.0 -0.933 360.0 360.0-142.3 360.0 -9.3 -4.7 21.1