==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-OCT-99 1D8Z . COMPND 2 MOLECULE: HU ANTIGEN C; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.INOUE,Y.MUTO,H.SAKAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6630.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 48.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 218 0, 0.0 3,-0.5 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 147.5 -16.6 9.2 11.2 2 1 A D + 0 0 141 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.511 360.0 107.1 -68.6 120.2 -17.0 9.0 7.4 3 2 A S - 0 0 39 -2,-0.4 -1,-0.2 52,-0.1 54,-0.0 0.292 55.6-150.9-159.1 -48.8 -13.4 9.0 6.0 4 3 A K - 0 0 159 -3,-0.5 2,-0.4 1,-0.2 55,-0.1 0.949 15.3-176.6 61.8 89.8 -12.4 5.5 4.7 5 4 A T + 0 0 51 47,-0.1 2,-0.5 54,-0.1 -1,-0.2 -0.586 28.5 132.8-118.4 71.5 -8.6 5.4 5.1 6 5 A N + 0 0 36 -2,-0.4 75,-0.5 46,-0.1 2,-0.3 -0.936 14.6 157.2-125.0 113.7 -7.6 2.0 3.6 7 6 A L E +A 51 0A 0 44,-2.1 44,-1.3 -2,-0.5 2,-0.5 -0.745 12.1 179.9-135.8 89.4 -4.7 1.8 1.1 8 7 A I E -AB 50 79A 31 71,-1.8 71,-1.3 -2,-0.3 2,-0.3 -0.774 12.6-156.8 -92.8 127.5 -3.0 -1.6 0.9 9 8 A V E +AB 49 78A 0 40,-1.8 40,-0.9 -2,-0.5 2,-0.3 -0.731 15.3 174.3-101.3 152.0 -0.1 -1.8 -1.6 10 9 A N E +AB 48 77A 34 67,-1.3 67,-1.4 -2,-0.3 38,-0.2 -0.890 50.0 53.6-145.4 176.6 1.1 -5.0 -3.3 11 10 A Y - 0 0 154 36,-1.2 37,-0.2 -2,-0.3 -1,-0.2 0.936 69.5-179.0 61.2 43.8 3.6 -6.2 -5.9 12 11 A L - 0 0 17 35,-1.1 -1,-0.2 -3,-0.1 2,-0.1 -0.604 22.5-126.6 -80.1 138.0 6.5 -4.4 -4.0 13 12 A P - 0 0 11 0, 0.0 34,-0.1 0, 0.0 3,-0.1 -0.379 26.8-103.1 -78.8 157.6 10.0 -4.7 -5.7 14 13 A Q S S+ 0 0 141 1,-0.2 33,-0.1 -2,-0.1 31,-0.1 0.954 121.1 50.2 -45.4 -69.7 13.0 -6.0 -3.7 15 14 A N S S+ 0 0 93 2,-0.0 5,-0.3 5,-0.0 -1,-0.2 0.885 92.6 92.8 -38.7 -48.1 14.6 -2.5 -3.2 16 15 A M + 0 0 8 4,-0.1 2,-0.2 3,-0.1 31,-0.1 -0.193 55.0 135.9 -49.3 135.5 11.2 -1.3 -1.9 17 16 A T S > S- 0 0 19 30,-0.0 4,-1.5 28,-0.0 5,-0.2 -0.747 71.9 -51.8-157.9-154.8 11.1 -1.7 1.9 18 17 A Q H > S+ 0 0 138 -2,-0.2 4,-0.9 2,-0.2 5,-0.1 0.856 138.0 39.8 -67.1 -30.3 10.1 0.3 5.0 19 18 A D H > S+ 0 0 114 2,-0.2 4,-1.9 1,-0.1 5,-0.3 0.923 119.3 42.7 -84.5 -47.1 12.1 3.3 3.8 20 19 A E H > S+ 0 0 54 -5,-0.3 4,-1.0 1,-0.2 -2,-0.2 0.718 115.8 53.3 -72.0 -15.5 11.4 3.1 0.0 21 20 A F H X S+ 0 0 3 -4,-1.5 4,-1.6 2,-0.2 -1,-0.2 0.818 106.9 50.7 -86.7 -31.8 7.7 2.4 1.0 22 21 A K H X S+ 0 0 141 -4,-0.9 4,-0.6 -5,-0.2 -2,-0.2 0.974 115.0 40.2 -70.0 -54.2 7.5 5.5 3.3 23 22 A S H X S+ 0 0 74 -4,-1.9 4,-2.1 2,-0.2 3,-0.5 0.938 111.6 59.3 -61.8 -44.8 8.8 8.0 0.7 24 23 A L H < S+ 0 0 57 -4,-1.0 3,-0.4 -5,-0.3 -2,-0.2 0.970 123.6 20.7 -48.4 -67.0 6.9 6.4 -2.1 25 24 A F H >X S+ 0 0 0 -4,-1.6 4,-0.8 1,-0.2 3,-0.5 0.405 116.0 76.2 -84.4 6.2 3.4 6.9 -0.5 26 25 A G H 3< S+ 0 0 36 -4,-0.6 2,-0.5 -3,-0.5 -1,-0.2 0.864 89.1 53.1 -84.1 -36.7 4.9 9.6 1.6 27 26 A S T 3< S+ 0 0 114 -4,-2.1 -1,-0.2 -3,-0.4 -2,-0.1 -0.135 109.0 52.7 -90.0 42.6 5.0 12.3 -1.1 28 27 A I T <4 S- 0 0 42 -3,-0.5 2,-0.3 -2,-0.5 -1,-0.2 0.499 117.1 -13.5-141.2 -39.1 1.3 11.8 -2.0 29 28 A G S < S- 0 0 15 -4,-0.8 2,-2.1 -3,-0.1 -1,-0.4 -0.991 76.0 -84.0-163.6 162.1 -0.8 12.1 1.2 30 29 A D - 0 0 109 -2,-0.3 2,-1.4 1,-0.1 -4,-0.1 -0.476 43.8-149.2 -74.0 83.1 -0.4 12.2 5.0 31 30 A I - 0 0 20 -2,-2.1 3,-0.3 -6,-0.3 22,-0.3 -0.290 3.4-151.5 -55.1 90.5 -0.4 8.4 5.6 32 31 A E S S- 0 0 122 -2,-1.4 -1,-0.2 20,-0.5 2,-0.2 0.795 81.4 -7.4 -37.1 -29.7 -2.0 8.6 9.0 33 32 A S E S-C 52 0A 75 19,-1.4 19,-0.9 -3,-0.1 -1,-0.2 -0.697 70.0-156.9-172.7 115.7 -0.0 5.4 9.7 34 33 A C E +C 51 0A 43 -3,-0.3 17,-0.2 17,-0.2 -12,-0.1 -0.405 11.5 176.4 -89.4 171.9 2.1 3.2 7.3 35 34 A K E -C 50 0A 153 15,-2.0 15,-1.0 -2,-0.1 16,-0.1 -0.185 6.5-171.6-175.4 71.4 2.9 -0.5 7.9 36 35 A L E -C 49 0A 19 13,-0.3 2,-0.3 1,-0.1 13,-0.3 -0.351 42.3 -93.3 -68.8 152.3 4.8 -2.4 5.3 37 36 A V + 0 0 18 11,-1.3 9,-0.3 -20,-0.1 2,-0.2 -0.493 56.1 161.7 -68.0 126.1 5.1 -6.2 5.8 38 37 A R - 0 0 127 -2,-0.3 7,-0.2 7,-0.1 -1,-0.0 -0.706 31.9-138.2-149.6 94.0 8.3 -6.9 7.6 39 38 A D - 0 0 57 5,-1.1 6,-0.0 -2,-0.2 7,-0.0 0.038 16.2-129.5 -43.7 161.8 8.8 -10.3 9.4 40 39 A K S S+ 0 0 207 3,-0.1 -1,-0.1 2,-0.0 0, 0.0 0.144 93.1 57.3-104.7 20.4 10.4 -10.0 12.8 41 40 A I S S- 0 0 161 3,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.603 125.5 -9.1-111.7 -91.7 13.0 -12.7 12.1 42 41 A T S S- 0 0 117 2,-0.1 -2,-0.0 0, 0.0 -4,-0.0 0.937 91.5-116.2 -77.9 -46.8 15.3 -12.2 9.1 43 42 A G + 0 0 14 1,-0.2 2,-0.3 2,-0.0 -3,-0.1 0.646 51.8 162.4 116.9 28.6 13.5 -9.2 7.7 44 43 A Q - 0 0 131 1,-0.1 -5,-1.1 -6,-0.0 -1,-0.2 -0.606 37.2-124.8 -80.3 136.4 12.3 -10.5 4.3 45 44 A S - 0 0 25 -2,-0.3 -7,-0.1 -7,-0.2 4,-0.1 -0.525 4.0-141.6 -79.3 146.8 9.5 -8.5 2.7 46 45 A L - 0 0 112 -9,-0.3 -1,-0.1 2,-0.3 3,-0.1 0.533 49.6-103.4 -85.4 -3.3 6.2 -10.3 1.8 47 46 A G S S+ 0 0 21 -10,-0.2 -36,-1.2 1,-0.2 -35,-1.1 0.821 95.5 64.4 87.6 32.3 6.0 -8.2 -1.4 48 47 A Y E -A 10 0A 69 -38,-0.2 -11,-1.3 -37,-0.2 -2,-0.3 -0.868 57.9-163.7-179.1 143.6 3.2 -5.9 -0.1 49 48 A G E -AC 9 36A 0 -40,-0.9 -40,-1.8 -13,-0.3 2,-0.4 -0.745 20.0-117.4-129.0 179.0 2.7 -3.2 2.6 50 49 A F E +AC 8 35A 78 -15,-1.0 -15,-2.0 -2,-0.2 2,-0.3 -0.940 27.6 178.2-121.2 142.7 -0.2 -1.4 4.4 51 50 A V E -AC 7 34A 0 -44,-1.3 -44,-2.1 -2,-0.4 2,-0.5 -0.999 13.0-164.4-144.2 142.1 -0.9 2.3 4.3 52 51 A N E - C 0 33A 55 -19,-0.9 -19,-1.4 -2,-0.3 -20,-0.5 -0.944 12.6-157.2-129.3 113.3 -3.7 4.5 5.8 53 52 A Y - 0 0 0 -2,-0.5 -22,-0.2 -22,-0.3 -46,-0.0 -0.211 24.0-120.8 -79.0 177.4 -4.2 8.0 4.5 54 53 A S S S+ 0 0 40 1,-0.1 -1,-0.1 -24,-0.1 -23,-0.1 0.813 92.3 26.4 -89.8 -32.6 -5.9 10.8 6.5 55 54 A D S > S- 0 0 67 1,-0.1 4,-1.0 -25,-0.0 -1,-0.1 -0.888 72.7-125.3-129.2 161.8 -8.7 11.4 4.0 56 55 A P H > S+ 0 0 46 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.689 108.8 59.7 -76.8 -21.1 -10.5 9.5 1.2 57 56 A N H > S+ 0 0 109 2,-0.2 4,-1.0 1,-0.2 5,-0.1 0.921 107.7 42.9 -75.6 -42.4 -9.6 12.1 -1.4 58 57 A D H > S+ 0 0 52 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.792 114.8 53.0 -73.5 -24.6 -5.9 11.8 -0.9 59 58 A A H X S+ 0 0 0 -4,-1.0 4,-1.0 2,-0.2 -2,-0.2 0.911 107.2 49.0 -77.3 -41.3 -6.3 8.0 -0.8 60 59 A D H X S+ 0 0 63 -4,-1.9 4,-1.4 1,-0.2 -1,-0.2 0.774 110.0 54.6 -69.7 -20.8 -8.2 7.8 -4.1 61 60 A K H < S+ 0 0 86 -4,-1.0 4,-0.5 2,-0.2 5,-0.3 0.896 102.9 53.3 -79.3 -38.5 -5.5 10.0 -5.7 62 61 A A H X S+ 0 0 0 -4,-1.4 4,-1.3 1,-0.2 -1,-0.2 0.789 115.2 43.9 -65.9 -21.7 -2.7 7.7 -4.6 63 62 A I H X S+ 0 0 19 -4,-1.0 4,-0.7 2,-0.2 -1,-0.2 0.756 106.5 58.2 -92.9 -27.2 -4.7 5.0 -6.4 64 63 A N H < S+ 0 0 109 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.470 123.3 25.5 -81.1 2.6 -5.5 7.1 -9.5 65 64 A T H 4 S+ 0 0 86 -4,-0.5 -2,-0.2 -3,-0.1 -3,-0.2 0.563 129.5 37.4-133.3 -31.6 -1.8 7.5 -10.1 66 65 A L H >< S+ 0 0 14 -4,-1.3 2,-1.7 -5,-0.3 12,-0.9 0.325 82.8 111.4-106.9 8.2 -0.0 4.5 -8.5 67 66 A N T 3< S+ 0 0 79 -4,-0.7 10,-0.1 1,-0.3 -4,-0.1 -0.576 94.5 6.3 -83.2 85.8 -2.7 1.9 -9.4 68 67 A G T 3 S- 0 0 37 -2,-1.7 2,-0.4 1,-0.1 -1,-0.3 0.793 80.7-179.1 108.8 57.9 -0.7 -0.1 -11.9 69 68 A L E < -D 76 0B 57 7,-1.2 7,-2.0 -3,-0.6 2,-0.3 -0.722 20.4-135.9 -90.4 135.8 2.9 1.2 -11.9 70 69 A K E -D 75 0B 194 -2,-0.4 2,-0.2 5,-0.2 5,-0.2 -0.654 19.9-164.8 -90.8 148.2 5.3 -0.5 -14.4 71 70 A L - 0 0 64 3,-2.2 -1,-0.0 -2,-0.3 0, 0.0 -0.730 40.8 -92.2-123.1 174.1 8.8 -1.5 -13.3 72 71 A Q S S- 0 0 190 -2,-0.2 -1,-0.1 1,-0.2 3,-0.0 0.861 120.9 -11.4 -56.4 -32.5 11.9 -2.5 -15.2 73 72 A T S S+ 0 0 98 1,-0.0 2,-0.3 0, 0.0 -1,-0.2 0.163 129.2 63.4-154.6 21.4 10.8 -6.1 -14.9 74 73 A K - 0 0 87 2,-0.0 -3,-2.2 -61,-0.0 2,-0.5 -0.912 66.6-129.7-142.8 170.6 7.9 -6.1 -12.4 75 74 A T E -D 70 0B 87 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.2 -0.905 20.7-167.9-129.4 108.2 4.4 -4.7 -12.1 76 75 A I E -D 69 0B 9 -7,-2.0 -7,-1.2 -2,-0.5 2,-0.3 -0.544 8.9-178.2 -89.4 158.9 3.4 -2.8 -8.9 77 76 A K E -B 10 0A 90 -67,-1.4 -67,-1.3 -9,-0.3 -10,-0.2 -0.908 19.8-138.8-160.8 130.9 -0.2 -1.9 -8.1 78 77 A V E -B 9 0A 0 -12,-0.9 2,-0.3 -2,-0.3 -69,-0.2 -0.471 23.9-177.8 -84.8 160.8 -2.1 -0.1 -5.4 79 78 A S E -B 8 0A 40 -71,-1.3 -71,-1.8 -2,-0.1 2,-0.0 -0.951 35.6 -98.5-160.4 138.1 -5.4 -1.4 -4.0 80 79 A Y - 0 0 88 -2,-0.3 2,-0.9 -73,-0.2 -73,-0.3 -0.339 46.4-114.4 -57.7 129.4 -8.0 -0.2 -1.4 81 80 A A + 0 0 20 -75,-0.5 -1,-0.1 -30,-0.2 -76,-0.0 -0.528 51.1 167.2 -70.0 107.0 -7.2 -2.0 1.9 82 81 A R - 0 0 186 -2,-0.9 3,-0.1 1,-0.1 2,-0.0 -0.850 34.3-109.1-121.7 159.7 -10.3 -4.2 2.4 83 82 A P - 0 0 116 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.214 57.9 -62.8 -77.6 170.6 -11.1 -7.1 4.7 84 83 A S - 0 0 101 1,-0.1 0, 0.0 -2,-0.0 0, 0.0 -0.029 54.3-106.3 -48.7 161.0 -11.4 -10.8 3.5 85 84 A S - 0 0 110 -3,-0.1 -1,-0.1 1,-0.0 0, 0.0 0.868 41.9-144.3 -62.4 -32.6 -14.4 -11.3 1.1 86 85 A A + 0 0 78 2,-0.0 -1,-0.0 1,-0.0 -2,-0.0 0.997 28.9 178.8 67.6 62.8 -16.2 -13.1 4.0 87 86 A S - 0 0 97 1,-0.1 -3,-0.0 2,-0.1 -1,-0.0 -0.165 19.1-170.2 -85.3-173.5 -18.0 -15.8 1.9 88 87 A I 0 0 147 -2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.411 360.0 360.0-142.9 -62.7 -20.3 -18.4 3.3 89 88 A R 0 0 291 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.833 360.0 360.0 -99.9 360.0 -21.3 -21.2 0.8