==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 28-OCT-99 1D9N . COMPND 2 MOLECULE: METHYL-CPG-BINDING PROTEIN MBD1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.OHKI,N.SHIMOTAKE,N.FUJITA,M.NAKAO,M.SHIRAKAWA . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5879.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 14.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 248 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 67.1 48.1 -0.1 15.9 2 2 A A - 0 0 83 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.982 360.0-135.0 176.5-175.5 50.7 -0.8 13.2 3 3 A E S S- 0 0 91 -2,-0.3 17,-0.1 17,-0.0 -1,-0.1 0.395 70.6 -42.3-127.7 -92.2 52.0 -3.5 10.8 4 4 A D + 0 0 61 15,-0.1 2,-1.1 2,-0.1 13,-0.1 -0.051 62.2 167.3-139.3 35.4 55.7 -4.3 10.3 5 5 A W + 0 0 77 13,-0.1 2,-0.3 11,-0.1 13,-0.2 -0.301 21.3 169.8 -54.7 94.6 57.3 -0.8 10.2 6 6 A L E -A 17 0A 105 11,-1.6 11,-2.7 -2,-1.1 -2,-0.1 -0.733 46.3 -72.8-109.3 160.9 60.9 -2.0 10.5 7 7 A D E -A 16 0A 127 -2,-0.3 9,-0.2 9,-0.2 -1,-0.1 -0.221 53.3-121.1 -49.7 130.4 64.2 0.0 10.1 8 8 A C > - 0 0 2 7,-1.8 4,-1.0 4,-0.5 7,-0.2 -0.687 32.0-179.3 -81.6 115.2 64.6 0.6 6.3 9 9 A P T 4 S+ 0 0 95 0, 0.0 -1,-0.2 0, 0.0 59,-0.1 0.946 74.1 60.2 -78.6 -55.6 68.0 -0.9 5.3 10 10 A A T 4 S+ 0 0 25 57,-0.3 48,-0.1 1,-0.2 59,-0.1 0.917 126.8 18.1 -39.7 -56.7 68.0 -0.1 1.5 11 11 A L T 4 S- 0 0 31 1,-0.2 -1,-0.2 46,-0.1 48,-0.0 0.953 108.2-135.6 -83.3 -56.9 67.8 3.6 2.4 12 12 A G < - 0 0 14 -4,-1.0 -4,-0.5 3,-0.2 3,-0.3 -0.995 49.6 -0.9 140.0-146.5 68.9 3.6 6.0 13 13 A P S S+ 0 0 120 0, 0.0 2,-0.3 0, 0.0 3,-0.1 -0.359 117.3 34.0 -77.6 158.1 67.7 5.4 9.2 14 14 A G S S+ 0 0 46 1,-0.2 2,-0.5 -2,-0.1 22,-0.0 -0.078 98.0 94.7 88.2 -38.9 64.7 7.8 9.2 15 15 A W - 0 0 5 -3,-0.3 -7,-1.8 -2,-0.3 2,-0.5 -0.731 68.2-146.7 -89.0 130.0 63.0 5.8 6.4 16 16 A K E -AB 7 36A 102 20,-1.7 20,-1.4 -2,-0.5 2,-0.8 -0.821 5.9-157.7 -97.5 127.8 60.5 3.2 7.7 17 17 A R E +AB 6 35A 19 -11,-2.7 -11,-1.6 -2,-0.5 2,-0.3 -0.815 16.8 176.5-107.3 98.8 60.2 -0.0 5.6 18 18 A R E - B 0 34A 48 16,-1.8 16,-1.4 -2,-0.8 2,-0.3 -0.768 10.4-159.1-100.2 145.7 56.9 -1.7 6.1 19 19 A E E - B 0 33A 50 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.862 5.4-167.4-121.9 158.3 55.9 -4.9 4.2 20 20 A V + 0 0 25 12,-3.0 12,-0.2 -2,-0.3 -17,-0.0 -0.946 69.0 18.3-139.9 161.1 52.4 -6.4 3.5 21 21 A F S S+ 0 0 136 -2,-0.3 -1,-0.1 10,-0.3 12,-0.1 0.831 96.6 107.2 48.6 27.9 51.2 -9.8 2.1 22 22 A R S S+ 0 0 137 9,-0.1 -1,-0.1 -3,-0.1 7,-0.1 0.796 77.3 33.7-103.2 -40.1 54.7 -11.0 3.0 23 23 A K S S+ 0 0 169 1,-0.1 2,-0.1 -4,-0.1 6,-0.1 0.928 117.3 42.0 -79.7 -83.9 54.0 -13.1 6.1 24 24 A S S S+ 0 0 103 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.414 92.9 78.5 -64.5 133.9 50.5 -14.8 5.7 25 25 A G S S- 0 0 51 -2,-0.1 4,-0.2 -3,-0.1 6,-0.0 -0.575 86.2 -62.9 142.2 153.6 50.1 -16.0 2.1 26 26 A A > - 0 0 83 -2,-0.2 3,-2.3 1,-0.2 0, 0.0 0.021 66.8 -87.9 -53.9 172.5 51.2 -19.0 -0.1 27 27 A T T 3 S+ 0 0 160 1,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.718 135.3 43.3 -60.0 -14.8 55.0 -19.4 -0.8 28 28 A C T 3 S+ 0 0 120 2,-0.1 2,-1.2 0, 0.0 -1,-0.3 -0.035 76.4 145.9-119.4 31.6 54.4 -17.0 -3.7 29 29 A G < - 0 0 31 -3,-2.3 -2,-0.0 -4,-0.2 0, 0.0 -0.539 55.1-125.4 -71.9 99.9 52.1 -14.5 -1.9 30 30 A R - 0 0 189 -2,-1.2 2,-0.6 1,-0.1 -1,-0.1 -0.208 26.3-150.0 -46.7 116.4 53.1 -11.2 -3.6 31 31 A S - 0 0 11 -9,-0.1 -10,-0.3 -6,-0.0 -9,-0.1 -0.822 4.5-144.1 -97.0 122.4 54.0 -9.0 -0.7 32 32 A D - 0 0 52 -2,-0.6 -12,-3.0 -12,-0.2 2,-0.4 -0.445 11.8-150.9 -79.4 157.1 53.4 -5.3 -1.2 33 33 A T E +B 19 0A 6 31,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.968 15.5 177.7-135.3 124.4 55.8 -2.8 0.3 34 34 A Y E -B 18 0A 71 -16,-1.4 -16,-1.8 -2,-0.4 2,-0.3 -0.947 12.8-153.0-123.6 143.8 55.1 0.8 1.5 35 35 A Y E -BC 17 43A 1 8,-2.0 8,-1.7 -2,-0.4 2,-0.5 -0.846 4.0-147.1-116.0 154.4 57.5 3.2 3.1 36 36 A Q E -BC 16 42A 70 -20,-1.4 -20,-1.7 -2,-0.3 6,-0.2 -0.960 16.0-138.2-122.4 120.4 56.8 6.1 5.5 37 37 A S - 0 0 4 4,-1.8 3,-0.3 -2,-0.5 -22,-0.1 -0.203 29.0-106.9 -68.4 168.4 59.1 9.2 5.4 38 38 A P S S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -23,-0.1 0.349 119.4 50.3 -78.0 6.1 60.2 10.9 8.7 39 39 A T S S- 0 0 99 2,-0.1 3,-0.1 0, 0.0 -2,-0.0 0.605 125.6 -91.3-116.6 -21.7 57.7 13.7 8.0 40 40 A G S S+ 0 0 36 -3,-0.3 2,-0.8 1,-0.2 -4,-0.0 0.545 78.7 137.1 119.2 15.9 54.5 11.8 7.2 41 41 A D - 0 0 72 8,-0.0 -4,-1.8 2,-0.0 2,-0.4 -0.804 37.6-159.5 -96.8 107.0 54.8 11.4 3.5 42 42 A R E -C 36 0A 194 -2,-0.8 2,-0.3 -6,-0.2 -6,-0.2 -0.702 13.1-179.1 -87.3 132.3 53.8 7.8 2.5 43 43 A I E +C 35 0A 9 -8,-1.7 -8,-2.0 -2,-0.4 -2,-0.0 -0.953 22.0 168.7-130.0 149.9 55.1 6.6 -0.9 44 44 A R + 0 0 153 -2,-0.3 -11,-0.2 -10,-0.2 3,-0.1 0.262 62.6 85.7-142.2 9.3 54.6 3.3 -2.7 45 45 A S S > S- 0 0 67 1,-0.2 2,-1.4 2,-0.0 3,-0.8 0.266 81.3-142.7 -97.2 14.1 55.9 3.9 -6.3 46 46 A K T >> S+ 0 0 47 1,-0.3 4,-1.7 -13,-0.2 3,-1.2 -0.406 95.6 41.7 62.7 -94.1 59.5 3.1 -5.2 47 47 A V H 3> S+ 0 0 44 -2,-1.4 4,-2.7 1,-0.3 5,-0.5 0.867 105.5 69.3 -52.9 -31.9 61.3 5.8 -7.3 48 48 A E H <> S+ 0 0 93 -3,-0.8 4,-1.1 1,-0.3 -1,-0.3 0.945 103.6 41.2 -53.3 -45.5 58.5 8.2 -6.3 49 49 A L H <> S+ 0 0 0 -3,-1.2 4,-2.7 2,-0.2 5,-0.3 0.847 112.4 58.7 -71.9 -28.7 59.9 8.1 -2.8 50 50 A T H X S+ 0 0 15 -4,-1.7 4,-2.3 1,-0.2 7,-0.3 0.999 108.0 41.2 -62.0 -65.3 63.4 8.3 -4.2 51 51 A R H < S+ 0 0 170 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.807 115.9 57.7 -54.0 -24.3 62.9 11.6 -6.1 52 52 A Y H < S+ 0 0 102 -4,-1.1 -2,-0.2 -5,-0.5 -1,-0.2 0.995 104.9 43.5 -70.5 -68.1 61.0 12.6 -3.0 53 53 A L H < S- 0 0 51 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.870 112.7-137.5 -45.2 -36.0 63.8 12.2 -0.4 54 54 A G >< - 0 0 21 -4,-2.3 3,-1.1 -5,-0.3 -1,-0.2 -0.796 49.1 -28.0 112.7-157.6 66.0 13.8 -3.0 55 55 A P T 3 S+ 0 0 144 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 0.348 121.3 81.0 -77.8 6.1 69.6 12.9 -4.1 56 56 A A T 3 S+ 0 0 86 -6,-0.2 2,-0.3 -3,-0.2 -2,-0.1 0.734 100.9 26.3 -85.3 -21.4 70.2 11.5 -0.6 57 57 A C < - 0 0 27 -3,-1.1 2,-0.3 -7,-0.3 -3,-0.1 -0.913 65.6-169.1-135.9 164.4 68.4 8.2 -1.5 58 58 A D + 0 0 82 -2,-0.3 -11,-0.1 -48,-0.1 -12,-0.0 -0.998 18.6 172.4-153.0 150.7 67.7 6.2 -4.7 59 59 A L > + 0 0 0 -2,-0.3 3,-0.6 3,-0.1 -12,-0.2 0.225 42.7 121.5-143.7 12.1 65.6 3.2 -5.7 60 60 A T T 3 S+ 0 0 99 1,-0.3 -13,-0.1 -14,-0.1 11,-0.1 0.921 99.3 21.9 -46.0 -46.1 66.0 3.0 -9.5 61 61 A L T 3 S+ 0 0 97 9,-0.1 9,-0.3 2,-0.1 -1,-0.3 0.419 100.7 120.0-101.6 0.5 67.3 -0.5 -9.0 62 62 A F < - 0 0 0 -3,-0.6 2,-0.8 7,-0.2 7,-0.3 -0.414 66.5-127.2 -66.4 137.5 65.7 -1.0 -5.6 63 63 A D > - 0 0 73 5,-3.6 2,-3.8 -2,-0.1 4,-1.9 -0.755 9.3-144.1 -89.3 111.7 63.3 -4.0 -5.5 64 64 A F T 4 S+ 0 0 34 -2,-0.8 -31,-0.3 1,-0.2 -1,-0.1 -0.223 97.2 30.0 -70.3 59.3 59.9 -2.7 -4.2 65 65 A K T 4 S+ 0 0 96 -2,-3.8 -1,-0.2 3,-0.1 -2,-0.0 0.131 118.3 47.2-179.5 -40.5 59.5 -6.1 -2.4 66 66 A Q T 4 S- 0 0 144 -3,-0.3 -2,-0.1 2,-0.2 3,-0.1 0.786 96.1-127.8 -90.4 -29.3 62.9 -7.6 -1.5 67 67 A G < + 0 0 14 -4,-1.9 2,-0.3 1,-0.3 -57,-0.3 0.835 69.3 108.6 87.1 33.9 64.2 -4.3 0.0 68 68 A I - 0 0 86 -5,-0.4 -5,-3.6 -7,-0.1 2,-0.3 -0.978 43.8-168.9-141.0 155.4 67.5 -4.3 -2.0 69 69 A L - 0 0 46 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.2 -0.997 7.6-154.1-143.3 146.2 68.9 -2.2 -4.9 70 70 A C - 0 0 82 -2,-0.3 -9,-0.1 -9,-0.3 -8,-0.0 -0.869 4.4-166.1-121.5 156.8 72.0 -2.6 -7.1 71 71 A Y - 0 0 169 -2,-0.3 2,-1.4 -10,-0.1 -2,-0.0 -0.779 8.4-157.4-146.1 98.8 74.1 -0.1 -9.0 72 72 A P S S- 0 0 111 0, 0.0 3,-0.4 0, 0.0 -2,-0.0 -0.590 77.3 -41.6 -76.7 91.1 76.6 -1.4 -11.7 73 73 A A - 0 0 70 -2,-1.4 2,-2.2 1,-0.2 0, 0.0 0.920 66.4-138.0 48.2 91.2 79.1 1.4 -11.9 74 74 A P 0 0 109 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.460 360.0 360.0 -77.4 69.9 76.9 4.5 -11.7 75 75 A K 0 0 262 -2,-2.2 -2,-0.1 -3,-0.4 0, 0.0 0.855 360.0 360.0-100.8 360.0 78.7 6.5 -14.4