==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 08-DEC-05 2D90 . COMPND 2 MOLECULE: PDZ DOMAIN CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7037.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 21.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 80.8 -2.1 -7.0 -20.9 2 2 A S + 0 0 139 1,-0.1 2,-0.5 2,-0.0 0, 0.0 0.906 360.0 59.8 -40.9 -57.8 0.6 -7.7 -18.3 3 3 A S S S- 0 0 106 1,-0.1 -1,-0.1 2,-0.0 4,-0.1 -0.656 80.0-158.1 -80.4 121.2 -1.4 -5.8 -15.6 4 4 A G - 0 0 73 -2,-0.5 -1,-0.1 2,-0.1 3,-0.1 0.329 23.4-109.3 -75.8-149.5 -4.8 -7.3 -15.1 5 5 A S S S+ 0 0 106 1,-0.1 2,-1.6 3,-0.0 -1,-0.1 0.731 88.7 91.4-114.4 -47.1 -7.9 -5.6 -13.6 6 6 A S S S+ 0 0 81 80,-0.1 -2,-0.1 81,-0.1 -1,-0.1 -0.312 89.6 41.0 -56.2 86.8 -8.4 -7.1 -10.2 7 7 A G S S- 0 0 11 -2,-1.6 79,-0.3 -3,-0.1 2,-0.1 0.134 77.9-129.4 133.4 110.0 -6.3 -4.6 -8.3 8 8 A R E -A 85 0A 92 77,-1.8 77,-0.9 1,-0.0 2,-0.5 -0.329 22.2-123.8 -77.2 161.9 -6.0 -0.9 -8.5 9 9 A V E -A 84 0A 93 75,-0.2 2,-0.3 -2,-0.1 75,-0.2 -0.937 25.3-168.3-113.5 121.4 -2.6 0.9 -8.8 10 10 A V E -A 83 0A 5 73,-3.2 73,-1.7 -2,-0.5 2,-0.4 -0.742 3.7-160.4-106.7 155.0 -1.7 3.7 -6.3 11 11 A V E +A 82 0A 71 -2,-0.3 2,-0.3 35,-0.3 71,-0.2 -0.987 13.4 169.3-139.3 127.5 1.2 6.2 -6.5 12 12 A I E -A 81 0A 2 69,-1.7 69,-1.8 -2,-0.4 2,-0.4 -0.951 17.6-155.6-135.8 155.4 2.7 8.2 -3.6 13 13 A K E -A 80 0A 138 -2,-0.3 67,-0.3 67,-0.2 66,-0.1 -0.951 35.4-104.0-136.8 115.6 5.8 10.4 -3.2 14 14 A K + 0 0 117 65,-3.3 5,-0.2 -2,-0.4 65,-0.0 0.015 49.1 165.8 -34.8 128.6 7.4 11.0 0.2 15 15 A G - 0 0 58 3,-2.2 -1,-0.1 0, 0.0 4,-0.1 0.604 55.5 -51.1-113.9 -92.0 6.5 14.5 1.4 16 16 A S S S+ 0 0 108 2,-0.2 2,-0.7 3,-0.1 3,-0.1 0.685 129.3 36.1-119.1 -64.9 7.0 15.7 4.9 17 17 A N S S- 0 0 122 1,-0.2 2,-0.4 2,-0.1 3,-0.1 -0.216 118.9 -96.1 -88.6 44.8 5.6 13.2 7.5 18 18 A G S S- 0 0 21 -2,-0.7 -3,-2.2 1,-0.2 -2,-0.2 -0.673 71.8 -41.5 84.2-128.6 6.6 10.2 5.4 19 19 A Y S S- 0 0 22 -2,-0.4 24,-1.6 -5,-0.2 25,-0.3 0.830 71.0-115.9-103.9 -57.9 3.9 8.8 3.1 20 20 A G S S+ 0 0 5 1,-0.3 18,-0.6 22,-0.2 2,-0.3 0.684 75.7 88.3 120.3 39.7 0.6 8.8 5.1 21 21 A F - 0 0 28 16,-0.2 -1,-0.3 22,-0.1 2,-0.2 -0.929 52.2-151.5-164.7 137.7 -0.4 5.2 5.6 22 22 A Y E -B 35 0A 121 13,-2.0 13,-0.6 -2,-0.3 2,-0.3 -0.525 10.9-141.7-105.5 174.6 0.3 2.3 8.0 23 23 A L E -B 34 0A 22 11,-0.2 2,-0.3 -2,-0.2 11,-0.2 -0.978 13.8-176.6-139.0 151.2 0.3 -1.4 7.7 24 24 A R E -B 33 0A 118 9,-1.1 9,-1.8 -2,-0.3 2,-1.1 -0.985 39.3 -95.1-146.4 154.5 -0.7 -4.4 9.8 25 25 A A E -B 32 0A 61 -2,-0.3 7,-0.1 7,-0.2 41,-0.0 -0.577 48.4-156.3 -73.4 100.6 -0.6 -8.2 9.7 26 26 A G - 0 0 19 -2,-1.1 5,-0.1 5,-0.7 -1,-0.0 0.050 24.3 -80.2 -67.1-177.7 -4.0 -9.2 8.2 27 27 A P S S- 0 0 51 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.185 75.2 -53.0 -69.8-165.6 -5.8 -12.5 8.6 28 28 A E S S+ 0 0 173 2,-0.1 -2,-0.1 64,-0.0 64,-0.0 0.851 112.1 99.7 -39.0 -45.0 -5.1 -15.7 6.7 29 29 A Q S S- 0 0 89 64,-0.2 2,-0.4 1,-0.1 63,-0.0 0.050 83.3-109.1 -42.3 154.7 -5.5 -13.7 3.6 30 30 A K S S+ 0 0 129 2,-0.0 33,-0.2 23,-0.0 2,-0.2 -0.746 74.1 44.2 -95.1 139.0 -2.3 -12.6 1.9 31 31 A G S S- 0 0 6 32,-0.5 -5,-0.7 -2,-0.4 2,-0.4 -0.490 82.0 -74.6 119.7 169.4 -1.2 -9.0 1.9 32 32 A Q E -BC 25 54A 10 22,-1.1 22,-2.5 -2,-0.2 2,-0.4 -0.829 36.1-132.5-107.4 144.4 -1.0 -6.0 4.2 33 33 A I E -BC 24 53A 21 -9,-1.8 -9,-1.1 -2,-0.4 2,-0.2 -0.788 17.5-140.7 -97.6 135.7 -3.9 -3.9 5.5 34 34 A I E +B 23 0A 0 18,-0.9 17,-3.0 -2,-0.4 2,-0.3 -0.614 34.5 137.8 -93.5 153.6 -3.7 -0.1 5.5 35 35 A K E +B 22 0A 68 -13,-0.6 -13,-2.0 15,-0.2 3,-0.1 -0.975 40.9 58.5-175.0 177.0 -5.1 2.1 8.2 36 36 A D - 0 0 99 -2,-0.3 2,-0.1 1,-0.2 -1,-0.1 0.874 69.9-170.1 52.5 40.3 -4.4 5.3 10.3 37 37 A I - 0 0 30 -16,-0.1 -16,-0.2 1,-0.1 -1,-0.2 -0.393 16.5-126.7 -64.6 134.6 -4.2 7.3 7.1 38 38 A E > - 0 0 61 -18,-0.6 3,-1.1 -3,-0.1 6,-0.5 -0.595 24.3-109.5 -85.6 144.0 -3.0 10.8 7.6 39 39 A P T 3 S+ 0 0 102 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.317 96.9 5.3 -69.8 152.3 -4.9 13.8 6.3 40 40 A G T 3 S+ 0 0 80 1,-0.2 -2,-0.0 2,-0.1 -20,-0.0 0.764 102.0 141.9 44.2 27.8 -3.7 15.9 3.4 41 41 A S S X> S- 0 0 9 -3,-1.1 4,-3.1 -21,-0.1 3,-0.8 -0.684 71.1-108.7-100.3 153.4 -0.9 13.3 3.2 42 42 A P T 34 S+ 0 0 38 0, 0.0 4,-0.4 0, 0.0 -22,-0.2 0.746 121.8 54.3 -48.0 -25.7 0.7 11.8 0.0 43 43 A A T 3>>S+ 0 0 0 -24,-1.6 5,-1.8 2,-0.2 4,-0.8 0.894 112.2 39.7 -77.6 -42.6 -1.2 8.6 0.9 44 44 A E T <45S+ 0 0 103 -3,-0.8 3,-0.3 -6,-0.5 -1,-0.1 0.858 116.6 50.2 -74.7 -36.9 -4.6 10.2 1.1 45 45 A A T <5S+ 0 0 87 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.614 104.2 62.2 -76.1 -12.5 -4.0 12.4 -1.9 46 46 A A T 45S- 0 0 34 -5,-0.4 -35,-0.3 -4,-0.4 -1,-0.2 0.808 121.2-101.7 -81.6 -32.4 -2.9 9.4 -3.8 47 47 A G T <5 + 0 0 31 -4,-0.8 -3,-0.2 -3,-0.3 -2,-0.1 0.509 66.6 153.3 120.6 12.7 -6.3 7.6 -3.6 48 48 A L < - 0 0 12 -5,-1.8 2,-0.3 -37,-0.1 -27,-0.0 0.118 26.8-151.5 -60.0-177.5 -5.6 5.1 -0.8 49 49 A K > - 0 0 111 -14,-0.0 3,-0.5 3,-0.0 -15,-0.3 -0.915 23.1 -97.6-164.1 134.4 -8.3 3.8 1.5 50 50 A N T 3 S+ 0 0 93 -2,-0.3 -15,-0.2 1,-0.2 -29,-0.0 -0.170 109.4 23.5 -52.1 141.9 -8.6 2.5 5.0 51 51 A N T 3 S+ 0 0 113 -17,-3.0 2,-0.6 1,-0.2 -1,-0.2 0.872 85.3 166.1 67.1 37.9 -8.5 -1.3 5.3 52 52 A D < - 0 0 13 -3,-0.5 -18,-0.9 -18,-0.2 2,-0.6 -0.781 28.6-145.1 -91.4 118.4 -6.7 -1.6 1.9 53 53 A L E -C 33 0A 11 -2,-0.6 33,-1.7 33,-0.4 2,-0.5 -0.729 12.0-155.4 -86.4 119.2 -5.2 -5.0 1.2 54 54 A V E +CD 32 85A 6 -22,-2.5 -22,-1.1 -2,-0.6 31,-0.2 -0.825 22.6 169.8 -98.5 128.5 -1.9 -4.9 -0.7 55 55 A V E S+ 0 0 36 29,-2.5 8,-1.6 -2,-0.5 7,-1.4 0.625 70.5 21.1-106.8 -22.0 -0.9 -7.9 -2.7 56 56 A A E -ED 61 84A 12 28,-1.2 28,-2.2 5,-0.2 2,-0.4 -0.985 57.9-156.2-146.8 155.2 2.0 -6.3 -4.6 57 57 A V E S- D 0 83A 2 3,-2.1 26,-0.2 -2,-0.3 -3,-0.0 -0.883 81.8 -17.1-139.0 105.2 4.3 -3.3 -4.3 58 58 A N S S- 0 0 65 24,-0.9 25,-0.1 -2,-0.4 3,-0.1 0.791 130.8 -48.8 73.0 28.6 6.0 -1.8 -7.3 59 59 A G S S+ 0 0 73 1,-0.3 2,-0.4 23,-0.1 -1,-0.2 0.708 114.8 119.9 83.3 21.1 5.3 -4.9 -9.4 60 60 A K - 0 0 126 0, 0.0 -3,-2.1 0, 0.0 2,-0.7 -0.940 69.4-114.1-122.1 143.0 6.6 -7.2 -6.7 61 61 A S B +E 56 0A 74 -2,-0.4 -5,-0.2 -5,-0.2 -6,-0.0 -0.634 45.8 153.7 -77.5 111.5 4.8 -10.0 -4.8 62 62 A V > + 0 0 0 -7,-1.4 3,-1.9 -2,-0.7 -31,-0.2 0.512 52.3 89.4-112.5 -12.8 4.6 -9.0 -1.1 63 63 A E T 3 S+ 0 0 63 -8,-1.6 -32,-0.5 1,-0.3 -7,-0.1 0.638 91.4 51.7 -60.4 -12.3 1.5 -11.0 -0.2 64 64 A A T 3 S+ 0 0 81 -9,-0.2 -1,-0.3 -34,-0.1 -2,-0.1 0.567 101.4 75.8 -99.1 -13.6 4.0 -13.8 0.6 65 65 A L S < S- 0 0 78 -3,-1.9 -34,-0.3 1,-0.1 2,-0.2 -0.232 79.0-114.4 -88.9-178.4 6.2 -11.6 2.9 66 66 A D > - 0 0 99 -2,-0.1 4,-2.7 -41,-0.0 5,-0.4 -0.582 42.9 -78.2-112.2 176.1 5.5 -10.4 6.4 67 67 A H H > S+ 0 0 94 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.882 134.7 41.0 -37.0 -57.0 5.0 -7.0 8.0 68 68 A D H > S+ 0 0 98 2,-0.2 4,-2.3 3,-0.2 -1,-0.2 0.939 114.8 52.6 -60.3 -49.4 8.7 -6.3 7.8 69 69 A G H > S+ 0 0 2 2,-0.2 4,-2.0 1,-0.2 3,-0.2 0.960 116.0 37.2 -51.2 -61.9 9.0 -7.8 4.4 70 70 A V H X S+ 0 0 1 -4,-2.7 4,-1.4 1,-0.2 -2,-0.2 0.956 116.8 51.5 -56.4 -54.9 6.3 -5.7 2.8 71 71 A V H X S+ 0 0 40 -4,-2.6 4,-1.2 -5,-0.4 -1,-0.2 0.809 108.2 56.4 -52.9 -31.0 7.1 -2.6 4.8 72 72 A E H >X S+ 0 0 103 -4,-2.3 4,-1.1 -5,-0.2 3,-0.7 0.964 97.5 58.3 -66.7 -54.0 10.7 -3.0 3.6 73 73 A M H >X S+ 0 0 38 -4,-2.0 4,-1.4 1,-0.3 3,-1.3 0.875 103.4 55.3 -42.5 -46.9 9.9 -3.0 -0.1 74 74 A I H >< S+ 0 0 15 -4,-1.4 3,-0.5 1,-0.3 4,-0.5 0.917 101.3 56.0 -54.7 -47.1 8.3 0.4 0.3 75 75 A R H << S+ 0 0 194 -4,-1.2 3,-0.4 -3,-0.7 -1,-0.3 0.717 105.9 55.0 -59.2 -19.9 11.5 1.7 1.8 76 76 A K H << S+ 0 0 155 -3,-1.3 -1,-0.3 -4,-1.1 -2,-0.2 0.843 87.0 74.9 -82.0 -36.7 13.2 0.6 -1.4 77 77 A G S X< S- 0 0 26 -4,-1.4 3,-0.6 -3,-0.5 2,-0.5 0.691 89.5-156.1 -49.7 -17.6 10.9 2.5 -3.7 78 78 A G T 3 - 0 0 39 -4,-0.5 -1,-0.2 -3,-0.4 -64,-0.2 -0.647 62.8 -5.5 80.3-122.1 12.9 5.5 -2.6 79 79 A D T 3 S+ 0 0 105 -2,-0.5 -65,-3.3 1,-0.2 2,-0.3 0.957 138.0 23.4 -73.2 -53.6 11.0 8.8 -2.9 80 80 A Q E < -A 13 0A 88 -3,-0.6 2,-0.3 -67,-0.3 -67,-0.2 -0.843 67.8-177.1-116.2 153.0 7.9 7.4 -4.7 81 81 A T E -A 12 0A 4 -69,-1.8 -69,-1.7 -2,-0.3 2,-0.4 -0.997 20.9-128.1-149.1 148.3 6.4 3.9 -4.7 82 82 A T E -A 11 0A 44 -2,-0.3 -24,-0.9 -71,-0.2 2,-0.4 -0.796 20.5-159.2-100.5 139.3 3.5 2.1 -6.3 83 83 A L E -AD 10 57A 4 -73,-1.7 -73,-3.2 -2,-0.4 2,-0.6 -0.922 7.0-154.8-119.4 143.3 1.0 0.1 -4.4 84 84 A L E +AD 9 56A 50 -28,-2.2 -29,-2.5 -2,-0.4 -28,-1.2 -0.880 24.4 166.5-120.4 99.6 -1.4 -2.6 -5.6 85 85 A V E -AD 8 54A 1 -77,-0.9 -77,-1.8 -2,-0.6 2,-0.3 -0.770 32.5-118.2-111.3 157.0 -4.5 -3.1 -3.5 86 86 A L + 0 0 15 -33,-1.7 -33,-0.4 -2,-0.3 -80,-0.1 -0.738 27.9 171.7 -95.8 141.4 -7.7 -5.0 -4.2 87 87 A D S > S+ 0 0 77 -2,-0.3 3,-0.8 2,-0.1 4,-0.3 0.773 76.9 50.2-110.5 -54.4 -11.1 -3.3 -4.4 88 88 A K T 3 S+ 0 0 179 1,-0.3 2,-0.3 2,-0.1 3,-0.1 0.902 131.0 20.1 -53.6 -44.6 -13.6 -5.8 -5.7 89 89 A E T 3 S+ 0 0 123 1,-0.1 -1,-0.3 -36,-0.1 -3,-0.1 -0.662 84.9 118.8-130.0 77.0 -12.4 -8.3 -3.0 90 90 A A < + 0 0 20 -3,-0.8 -1,-0.1 -2,-0.3 -2,-0.1 0.811 47.5 91.5-103.8 -48.2 -10.6 -6.4 -0.3 91 91 A E - 0 0 130 -4,-0.3 2,-0.4 -3,-0.1 -39,-0.0 -0.094 66.3-143.7 -49.4 147.5 -12.7 -7.2 2.8 92 92 A S - 0 0 30 -63,-0.0 2,-0.2 -64,-0.0 -1,-0.1 -0.975 10.0-124.6-123.6 130.3 -11.5 -10.2 4.8 93 93 A I - 0 0 128 -2,-0.4 2,-0.4 1,-0.1 -64,-0.2 -0.477 23.2-138.9 -72.2 137.9 -13.8 -12.7 6.6 94 94 A Y - 0 0 182 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.845 18.6-117.1-102.5 132.4 -13.1 -13.2 10.3 95 95 A S - 0 0 104 -2,-0.4 2,-0.5 1,-0.1 -1,-0.1 0.004 21.9-124.3 -56.8 169.1 -13.3 -16.7 11.9 96 96 A L + 0 0 149 3,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.833 48.8 140.7-124.9 93.4 -15.8 -17.5 14.6 97 97 A S + 0 0 107 -2,-0.5 -2,-0.0 1,-0.2 0, 0.0 -0.994 38.8 52.3-135.8 140.4 -14.2 -18.8 17.8 98 98 A G - 0 0 64 -2,-0.4 -1,-0.2 2,-0.0 3,-0.1 0.801 65.8-141.4 100.7 83.5 -15.0 -18.2 21.4 99 99 A P - 0 0 117 0, 0.0 -2,-0.0 0, 0.0 -3,-0.0 -0.226 42.6 -64.6 -69.8 161.3 -18.7 -18.8 22.5 100 100 A S + 0 0 128 2,-0.0 2,-0.3 1,-0.0 -2,-0.0 0.119 62.4 173.0 -39.9 159.9 -20.5 -16.6 25.0 101 101 A S 0 0 112 -3,-0.1 -1,-0.0 0, 0.0 0, 0.0 -0.958 360.0 360.0-170.9 154.1 -19.1 -16.6 28.5 102 102 A G 0 0 127 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 0.759 360.0 360.0 47.5 360.0 -19.5 -14.9 31.9