==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 09-DEC-05 2D9E . COMPND 2 MOLECULE: PEREGRIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.HATTA,F.HAYASHI,K.IZUMI,M.YOSHIDA,S.YOKOYAMA,RIKEN . 121 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8244.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 91 75.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 63 52.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-176.2 7.5 27.1 -4.8 2 2 A S - 0 0 118 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.948 360.0 -91.2-142.0 161.4 3.7 26.8 -4.3 3 3 A S S S- 0 0 143 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 0.831 79.8-108.3 -38.3 -41.5 1.1 27.6 -1.7 4 4 A G - 0 0 59 1,-0.1 2,-0.6 2,-0.0 -1,-0.1 0.001 18.4-127.3 116.0 138.3 1.8 24.2 -0.3 5 5 A S + 0 0 71 1,-0.1 4,-0.2 -3,-0.1 -1,-0.1 -0.857 49.5 133.9-122.1 96.0 -0.1 20.9 -0.1 6 6 A S >> + 0 0 78 -2,-0.6 4,-1.8 2,-0.1 3,-1.5 0.810 63.1 65.5-104.8 -50.6 -0.4 19.5 3.4 7 7 A G H 3> S+ 0 0 37 1,-0.3 4,-2.2 2,-0.2 5,-0.2 0.857 101.4 54.0 -40.5 -46.2 -4.0 18.4 3.7 8 8 A F H 3> S+ 0 0 21 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.867 105.0 54.7 -59.0 -37.7 -3.3 15.7 1.1 9 9 A L H <> S+ 0 0 9 -3,-1.5 4,-2.4 2,-0.2 -1,-0.2 0.916 107.7 48.8 -62.7 -44.7 -0.4 14.4 3.1 10 10 A I H X S+ 0 0 87 -4,-1.8 4,-2.7 1,-0.2 5,-0.3 0.941 106.3 55.7 -61.1 -49.6 -2.6 13.9 6.2 11 11 A L H X S+ 0 0 9 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.887 110.6 46.8 -50.4 -43.4 -5.3 12.1 4.2 12 12 A L H X S+ 0 0 1 -4,-1.7 4,-3.0 2,-0.2 5,-0.3 0.968 110.1 50.3 -64.5 -55.3 -2.7 9.6 3.1 13 13 A R H X S+ 0 0 119 -4,-2.4 4,-1.2 1,-0.3 -2,-0.2 0.873 114.2 46.8 -51.0 -40.7 -1.1 9.1 6.5 14 14 A K H X S+ 0 0 60 -4,-2.7 4,-1.3 -5,-0.2 -1,-0.3 0.874 113.2 49.1 -70.3 -38.3 -4.6 8.4 7.9 15 15 A T H >X S+ 0 0 0 -4,-2.1 4,-1.6 -5,-0.3 3,-0.6 0.974 102.8 58.3 -65.4 -56.9 -5.5 6.1 5.0 16 16 A L H 3X S+ 0 0 9 -4,-3.0 4,-1.7 1,-0.3 -1,-0.2 0.859 104.4 54.8 -40.1 -45.8 -2.4 3.9 5.2 17 17 A E H 3X S+ 0 0 116 -4,-1.2 4,-1.8 -5,-0.3 -1,-0.3 0.939 101.3 56.7 -55.8 -51.0 -3.3 3.2 8.8 18 18 A Q H X S+ 0 0 0 -4,-1.6 3,-1.1 1,-0.2 4,-1.1 0.920 103.8 56.0 -58.0 -46.2 -5.1 -0.6 5.5 20 20 A Q H >< S+ 0 0 74 -4,-1.7 3,-0.6 1,-0.3 -1,-0.2 0.887 94.9 67.7 -53.9 -42.1 -3.0 -1.9 8.3 21 21 A E H 3< S+ 0 0 147 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.869 98.1 52.7 -46.1 -42.7 -6.1 -2.6 10.4 22 22 A K H << S+ 0 0 70 -3,-1.1 2,-1.5 -4,-0.9 -1,-0.3 0.898 95.8 73.6 -62.2 -41.8 -7.0 -5.3 7.8 23 23 A D << + 0 0 13 -4,-1.1 -1,-0.2 -3,-0.6 6,-0.0 -0.598 53.6 161.0 -78.3 90.8 -3.5 -6.9 8.2 24 24 A T S S+ 0 0 118 -2,-1.5 -1,-0.2 1,-0.2 -2,-0.1 0.704 75.0 52.2 -82.7 -21.7 -3.9 -8.5 11.7 25 25 A G S S- 0 0 46 -3,-0.2 -1,-0.2 67,-0.1 -2,-0.1 0.650 98.0-137.7 -87.6 -16.8 -1.0 -10.9 11.0 26 26 A N + 0 0 90 -6,-0.2 4,-0.4 1,-0.1 -2,-0.1 0.872 52.5 146.3 61.4 38.0 1.4 -8.1 10.1 27 27 A I S S+ 0 0 53 1,-0.2 3,-0.1 2,-0.1 -1,-0.1 0.824 80.7 27.3 -73.4 -32.4 2.7 -10.2 7.2 28 28 A F S S+ 0 0 11 1,-0.1 22,-1.6 -8,-0.1 23,-0.7 0.545 96.1 93.0-103.9 -13.1 3.3 -7.1 5.0 29 29 A S S S+ 0 0 31 21,-0.2 -2,-0.1 20,-0.1 -1,-0.1 0.792 94.3 40.3 -50.6 -29.1 3.7 -4.7 7.9 30 30 A E S S- 0 0 139 -4,-0.4 2,-0.2 20,-0.1 20,-0.1 -0.906 97.2 -99.2-124.7 152.1 7.4 -5.4 7.5 31 31 A P - 0 0 58 0, 0.0 18,-0.1 0, 0.0 -2,-0.1 -0.440 45.6-102.5 -69.7 137.0 9.7 -5.9 4.5 32 32 A V - 0 0 69 -2,-0.2 2,-0.1 1,-0.1 -4,-0.0 -0.369 39.7-116.2 -62.4 130.5 10.5 -9.4 3.5 33 33 A P > - 0 0 79 0, 0.0 4,-0.8 0, 0.0 3,-0.1 -0.403 12.4-152.3 -69.8 142.1 14.0 -10.5 4.5 34 34 A L T 4 S+ 0 0 97 2,-0.2 6,-0.2 1,-0.2 5,-0.1 0.757 88.3 74.9 -84.7 -27.4 16.6 -11.3 1.8 35 35 A S T 4 S+ 0 0 127 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 0.857 109.3 31.7 -52.5 -37.8 18.5 -13.7 4.1 36 36 A E T 4 S+ 0 0 167 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.2 0.721 126.7 45.1 -91.7 -26.1 15.7 -16.2 3.6 37 37 A V >< + 0 0 23 -4,-0.8 3,-1.3 1,-0.1 4,-0.3 -0.756 57.8 164.6-122.8 84.6 14.8 -15.1 0.1 38 38 A P T 3 S+ 0 0 101 0, 0.0 4,-0.2 0, 0.0 3,-0.2 0.720 84.4 46.4 -69.8 -21.8 18.0 -14.6 -2.0 39 39 A D T 3> S+ 0 0 81 1,-0.1 4,-0.6 -3,-0.1 5,-0.2 -0.005 77.2 118.3-109.3 26.7 15.9 -14.6 -5.2 40 40 A Y H X> S+ 0 0 24 -3,-1.3 4,-1.5 1,-0.2 3,-1.4 0.976 84.2 33.6 -55.6 -61.9 13.3 -12.2 -3.8 41 41 A L H 34 S+ 0 0 92 1,-0.3 -1,-0.2 -4,-0.3 -2,-0.1 0.866 100.9 79.9 -63.4 -37.0 14.0 -9.4 -6.4 42 42 A D H 34 S+ 0 0 117 1,-0.3 -1,-0.3 -4,-0.2 -2,-0.2 0.736 113.1 23.4 -42.6 -23.7 14.8 -12.0 -9.0 43 43 A H H << S+ 0 0 104 -3,-1.4 2,-0.6 -4,-0.6 -1,-0.3 0.610 120.5 64.9-115.8 -25.3 11.0 -12.2 -9.2 44 44 A I < - 0 0 7 -4,-1.5 -1,-0.2 -5,-0.2 35,-0.0 -0.906 51.6-177.8-107.8 120.2 10.1 -8.8 -7.9 45 45 A K S S+ 0 0 211 -2,-0.6 -1,-0.2 1,-0.3 -4,-0.1 0.864 85.7 24.2 -80.2 -39.1 11.1 -5.7 -9.9 46 46 A K S S- 0 0 90 2,-0.0 2,-0.5 28,-0.0 -1,-0.3 -0.758 78.0-159.8-131.9 86.8 9.6 -3.2 -7.4 47 47 A P + 0 0 43 0, 0.0 2,-0.3 0, 0.0 28,-0.1 -0.527 18.3 177.6 -69.8 116.9 9.4 -4.6 -3.9 48 48 A M + 0 0 7 -2,-0.5 2,-0.3 23,-0.1 -2,-0.0 -0.917 5.6 168.7-123.6 149.6 6.9 -2.6 -1.8 49 49 A D > - 0 0 11 -2,-0.3 4,-2.9 1,-0.1 5,-0.3 -0.933 49.2 -98.4-149.8 171.0 5.6 -3.0 1.7 50 50 A F H > S+ 0 0 4 -22,-1.6 4,-1.1 -2,-0.3 -21,-0.2 0.869 125.0 44.1 -61.3 -37.6 3.6 -1.3 4.4 51 51 A F H > S+ 0 0 94 -23,-0.7 4,-1.7 2,-0.2 -1,-0.2 0.910 115.5 47.0 -73.8 -44.3 6.8 -0.1 6.1 52 52 A T H > S+ 0 0 36 1,-0.2 4,-1.8 2,-0.2 3,-0.2 0.968 110.0 51.1 -62.0 -55.7 8.5 0.9 2.8 53 53 A M H X S+ 0 0 1 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.855 106.6 58.5 -50.6 -37.8 5.6 2.9 1.5 54 54 A K H X S+ 0 0 83 -4,-1.1 4,-2.9 -5,-0.3 5,-0.3 0.956 103.0 50.3 -57.9 -54.0 5.5 4.7 4.8 55 55 A Q H X S+ 0 0 105 -4,-1.7 4,-1.1 1,-0.2 -2,-0.2 0.934 112.0 47.3 -50.1 -54.0 9.0 6.0 4.5 56 56 A N H <>S+ 0 0 30 -4,-1.8 5,-2.1 1,-0.2 3,-0.5 0.894 112.1 51.1 -56.1 -42.3 8.4 7.3 1.0 57 57 A L H ><5S+ 0 0 12 -4,-2.4 3,-1.6 1,-0.2 -1,-0.2 0.908 108.5 50.3 -62.6 -43.3 5.1 8.9 2.2 58 58 A E H 3<5S+ 0 0 90 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.675 105.8 59.0 -69.1 -16.6 6.9 10.6 5.1 59 59 A A T 3<5S- 0 0 61 -4,-1.1 -1,-0.3 -3,-0.5 -2,-0.2 0.270 118.2-112.3 -94.6 10.1 9.5 11.9 2.6 60 60 A Y T < 5S+ 0 0 143 -3,-1.6 -3,-0.2 -5,-0.1 -2,-0.1 0.892 76.3 135.5 60.5 41.2 6.7 13.7 0.6 61 61 A R < + 0 0 169 -5,-2.1 2,-0.7 1,-0.2 -4,-0.2 0.701 55.9 66.7 -89.9 -23.2 7.2 11.3 -2.3 62 62 A Y + 0 0 13 -6,-0.3 -1,-0.2 -5,-0.2 3,-0.1 -0.879 47.1 150.0-105.5 109.4 3.4 10.8 -2.8 63 63 A L + 0 0 93 -2,-0.7 2,-0.5 1,-0.2 -1,-0.2 0.651 66.4 51.7-106.9 -25.0 1.6 13.9 -4.0 64 64 A N S >> S- 0 0 94 1,-0.1 3,-2.0 -56,-0.0 4,-1.3 -0.966 79.6-131.1-120.3 126.2 -1.1 12.2 -6.0 65 65 A F H 3> S+ 0 0 11 -2,-0.5 4,-2.7 1,-0.3 5,-0.3 0.865 106.7 65.8 -34.5 -56.2 -3.4 9.5 -4.6 66 66 A D H 3> S+ 0 0 104 1,-0.3 4,-2.3 2,-0.2 -1,-0.3 0.853 104.6 45.2 -35.4 -50.6 -2.7 7.4 -7.7 67 67 A D H <> S+ 0 0 54 -3,-2.0 4,-1.7 1,-0.2 -1,-0.3 0.961 111.2 50.3 -61.5 -53.9 0.9 7.2 -6.6 68 68 A F H X S+ 0 0 1 -4,-1.3 4,-0.9 1,-0.2 -1,-0.2 0.788 113.9 48.7 -55.7 -27.9 0.1 6.4 -3.0 69 69 A E H X S+ 0 0 41 -4,-2.7 4,-2.4 -5,-0.3 -1,-0.2 0.862 102.1 61.6 -80.3 -38.8 -2.2 3.7 -4.3 70 70 A E H X S+ 0 0 85 -4,-2.3 4,-2.0 -5,-0.3 -2,-0.2 0.953 100.0 53.8 -51.4 -58.0 0.4 2.2 -6.7 71 71 A D H X S+ 0 0 6 -4,-1.7 4,-2.0 1,-0.2 -1,-0.2 0.915 109.6 48.4 -42.6 -57.4 2.7 1.3 -3.9 72 72 A F H X S+ 0 0 3 -4,-0.9 4,-1.3 1,-0.2 5,-0.2 0.947 105.1 58.2 -50.0 -57.5 -0.0 -0.6 -2.1 73 73 A N H >X S+ 0 0 50 -4,-2.4 4,-2.7 1,-0.2 3,-1.0 0.885 106.7 49.4 -39.4 -53.2 -1.1 -2.5 -5.2 74 74 A L H 3X>S+ 0 0 39 -4,-2.0 4,-1.6 1,-0.3 5,-0.7 0.953 98.3 65.3 -53.6 -56.0 2.5 -3.9 -5.5 75 75 A I H 3<5S+ 0 0 4 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.806 114.6 34.2 -36.2 -38.4 2.6 -5.0 -1.9 76 76 A V H X5S+ 0 0 48 -4,-2.7 4,-2.6 2,-0.2 3,-0.8 0.992 108.4 49.6 -58.8 -67.6 1.0 -8.1 -6.5 78 78 A N H 3X5S+ 0 0 12 -4,-1.6 4,-0.6 1,-0.3 -1,-0.2 0.757 116.7 47.7 -44.2 -26.0 4.6 -8.9 -5.8 79 79 A C H 3> - 0 0 52 -2,-0.2 3,-1.0 1,-0.1 6,-0.4 -0.740 32.5 -98.1-115.0 164.3 0.8 -19.1 -4.5 85 85 A K T 3 S+ 0 0 139 1,-0.3 6,-0.5 -2,-0.3 5,-0.2 0.895 118.9 66.4 -43.8 -50.0 -2.6 -19.5 -2.8 86 86 A D T 3 S+ 0 0 164 4,-0.1 -1,-0.3 5,-0.1 5,-0.0 0.884 93.6 71.6 -38.7 -53.9 -1.3 -22.5 -1.0 87 87 A T S <> S- 0 0 52 -3,-1.0 4,-0.7 1,-0.1 -4,-0.0 0.055 86.1-126.0 -57.7 174.7 1.1 -20.2 1.0 88 88 A I H >> S+ 0 0 113 2,-0.2 4,-2.3 1,-0.1 3,-0.5 0.926 102.6 60.2 -89.8 -61.8 -0.2 -17.8 3.6 89 89 A F H 3> S+ 0 0 98 1,-0.2 4,-1.4 2,-0.2 -1,-0.1 0.742 104.5 60.5 -38.9 -25.6 1.2 -14.4 2.6 90 90 A Y H >> S+ 0 0 40 -6,-0.4 4,-2.0 2,-0.2 3,-0.6 0.986 106.1 39.2 -69.1 -61.2 -0.9 -15.2 -0.5 91 91 A R H S+ 0 0 130 -4,-1.4 4,-3.0 2,-0.2 5,-0.6 0.906 110.0 50.2 -64.5 -43.0 -7.9 -10.0 1.6 96 96 A L H X5S+ 0 0 1 -4,-1.3 4,-1.3 1,-0.2 5,-0.4 0.929 111.3 47.7 -61.6 -47.0 -6.0 -6.7 1.7 97 97 A R H X5S+ 0 0 120 -4,-2.4 4,-0.6 3,-0.2 -1,-0.2 0.870 118.8 42.1 -62.4 -37.7 -6.6 -6.0 -2.0 98 98 A E H <5S+ 0 0 145 -4,-2.0 4,-0.4 -5,-0.2 -2,-0.2 0.989 128.4 25.8 -72.7 -64.6 -10.3 -6.9 -1.6 99 99 A Q H >X5S+ 0 0 63 -4,-3.0 3,-2.8 1,-0.2 4,-0.7 0.972 116.4 61.2 -64.7 -56.4 -11.1 -5.1 1.6 100 100 A G H >X S+ 0 0 64 -3,-2.8 4,-2.0 -4,-0.4 -1,-0.3 0.866 106.8 51.1 -61.8 -37.4 -12.8 0.2 0.3 103 103 A V H < S+ 0 0 97 -4,-0.8 3,-1.3 -3,-0.3 -2,-0.2 0.790 107.5 57.1-101.0 -40.3 -10.3 14.9 -4.8 113 113 A K H 3< S+ 0 0 108 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.742 85.3 86.1 -63.7 -22.6 -12.9 16.8 -2.7 114 114 A M T 3< S+ 0 0 90 -4,-1.9 2,-0.7 1,-0.2 -1,-0.3 0.861 88.2 54.0 -45.7 -41.3 -10.1 18.8 -1.3 115 115 A G S <> S- 0 0 39 -3,-1.3 2,-1.6 -4,-0.1 4,-0.7 -0.858 87.6-137.0-104.2 107.5 -10.4 21.1 -4.3 116 116 A S B 4 S+a 119 0A 130 -2,-0.7 4,-0.1 1,-0.2 -3,-0.1 -0.392 84.5 57.1 -62.1 88.2 -13.9 22.5 -4.9 117 117 A G T 4 S+ 0 0 61 -2,-1.6 -1,-0.2 2,-0.7 -4,-0.1 -0.141 99.5 35.4-170.0 -84.5 -14.1 22.0 -8.6 118 118 A P T 4 S+ 0 0 124 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 0.540 125.1 42.4 -69.7 -5.9 -13.5 18.6 -10.4 119 119 A S B < S-a 116 0A 31 -4,-0.7 -2,-0.7 -7,-0.2 -10,-0.0 -0.956 79.0-140.9-147.2 123.9 -15.3 17.0 -7.4 120 120 A S 0 0 113 -2,-0.3 -5,-0.1 1,-0.1 -8,-0.1 -0.155 360.0 360.0 -74.5 173.4 -18.4 18.2 -5.5 121 121 A G 0 0 113 -7,-0.0 -1,-0.1 -5,-0.0 -7,-0.1 -0.502 360.0 360.0 168.2 360.0 -18.9 17.9 -1.8