==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-DEC-05 2D9M . COMPND 2 MOLECULE: ZINC FINGER CCCH-TYPE DOMAIN CONTAINING PROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5885.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 23.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 885 A G 0 0 106 0, 0.0 3,-0.3 0, 0.0 4,-0.3 0.000 360.0 360.0 360.0 -70.1 -16.4 -1.0 -20.2 2 886 A S + 0 0 103 1,-0.2 0, 0.0 2,-0.2 0, 0.0 -0.454 360.0 38.7-102.5 177.0 -18.7 -0.5 -17.2 3 887 A S S S- 0 0 110 -2,-0.1 -1,-0.2 3,-0.0 0, 0.0 0.873 134.1 -46.9 50.0 40.9 -18.2 1.2 -13.9 4 888 A G - 0 0 39 -3,-0.3 -2,-0.2 2,-0.1 0, 0.0 0.731 54.1-132.1 70.3 119.9 -16.1 3.9 -15.7 5 889 A S S S+ 0 0 104 -4,-0.3 3,-0.2 1,-0.1 -3,-0.1 0.963 106.2 12.1 -66.0 -53.7 -13.4 2.8 -18.2 6 890 A S S S+ 0 0 116 1,-0.2 2,-1.7 3,-0.0 -1,-0.1 0.686 113.5 80.9 -96.4 -24.0 -10.7 5.0 -16.8 7 891 A G S S+ 0 0 71 1,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.159 79.6 84.6 -77.5 45.4 -12.5 6.0 -13.6 8 892 A Q + 0 0 120 -2,-1.7 2,-0.4 -3,-0.2 -1,-0.1 -0.845 50.5 172.6-152.1 110.0 -11.4 2.7 -12.0 9 893 A Y - 0 0 179 -2,-0.3 2,-0.6 2,-0.0 -3,-0.0 -0.968 14.9-163.8-123.0 133.8 -8.1 2.0 -10.3 10 894 A C + 0 0 100 -2,-0.4 2,-0.3 1,-0.0 -2,-0.0 -0.786 33.8 138.7-117.8 87.2 -7.2 -1.1 -8.3 11 895 A W + 0 0 89 -2,-0.6 2,-0.6 2,-0.0 -2,-0.0 -0.720 12.8 150.1-131.6 83.1 -4.1 -0.4 -6.2 12 896 A Q + 0 0 163 -2,-0.3 2,-0.2 0, 0.0 33,-0.0 -0.899 22.7 124.7-119.6 102.8 -4.4 -1.9 -2.7 13 897 A H - 0 0 90 -2,-0.6 -2,-0.0 1,-0.2 0, 0.0 -0.809 60.9 -56.8-142.7-177.5 -1.1 -2.9 -1.1 14 898 A R - 0 0 136 -2,-0.2 -1,-0.2 1,-0.1 22,-0.1 -0.102 58.8-103.4 -60.9 163.7 1.0 -2.4 2.0 15 899 A F - 0 0 97 20,-0.2 2,-1.1 37,-0.1 -1,-0.1 -0.741 30.5-110.1 -95.7 139.6 2.0 1.1 3.1 16 900 A P - 0 0 2 0, 0.0 22,-0.1 0, 0.0 24,-0.1 -0.519 20.8-148.6 -69.8 96.5 5.5 2.5 2.6 17 901 A T - 0 0 81 -2,-1.1 21,-0.1 20,-0.5 22,-0.1 0.770 66.3 -74.4 -34.4 -33.0 7.0 2.6 6.1 18 902 A G S S+ 0 0 31 1,-0.4 -1,-0.2 20,-0.4 2,-0.1 0.237 101.6 112.0 152.7 -12.3 8.9 5.6 4.7 19 903 A Y - 0 0 126 19,-0.5 -1,-0.4 2,-0.1 2,-0.0 -0.436 51.0-151.6 -85.0 161.0 11.6 4.1 2.5 20 904 A F + 0 0 124 -2,-0.1 2,-0.3 -3,-0.1 19,-0.1 -0.461 59.8 83.7-131.2 60.9 11.7 4.4 -1.3 21 905 A S S S- 0 0 65 17,-0.3 19,-2.2 -2,-0.0 2,-0.3 -0.911 74.8 -92.4-150.2 175.1 13.6 1.3 -2.5 22 906 A I B -a 40 0A 43 -2,-0.3 2,-0.7 17,-0.2 19,-0.2 -0.724 37.3-113.9 -97.9 146.5 13.1 -2.3 -3.4 23 907 A C > - 0 0 1 17,-2.7 4,-3.1 -2,-0.3 5,-0.3 -0.688 17.8-158.6 -81.9 112.4 13.6 -5.2 -1.0 24 908 A D H > S+ 0 0 113 -2,-0.7 4,-2.4 1,-0.2 -1,-0.2 0.887 93.9 52.9 -55.4 -41.5 16.5 -7.3 -2.1 25 909 A R H > S+ 0 0 137 2,-0.2 4,-1.8 1,-0.2 5,-0.4 0.938 112.6 42.9 -60.5 -49.1 15.1 -10.3 -0.2 26 910 A Y H 4 S+ 0 0 90 14,-0.2 -2,-0.2 1,-0.2 -1,-0.2 0.946 114.2 49.9 -62.9 -50.3 11.7 -10.1 -1.9 27 911 A M H < S+ 0 0 91 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.871 109.0 54.1 -56.6 -38.8 13.2 -9.5 -5.3 28 912 A N H < S- 0 0 140 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.895 132.2 -85.8 -63.6 -41.2 15.5 -12.5 -4.8 29 913 A G S < S+ 0 0 59 -4,-1.8 2,-0.4 -3,-0.2 -3,-0.1 -0.158 98.5 30.8 168.0 -61.1 12.6 -14.7 -4.0 30 914 A T - 0 0 124 -5,-0.4 -2,-0.1 0, 0.0 -1,-0.1 -0.970 59.9-152.6-129.2 143.1 11.5 -14.7 -0.4 31 915 A C - 0 0 21 -2,-0.4 6,-0.0 1,-0.1 10,-0.0 -0.901 12.3-146.3-116.7 143.6 11.6 -11.9 2.3 32 916 A P S S+ 0 0 97 0, 0.0 -1,-0.1 0, 0.0 5,-0.0 0.939 97.4 47.4 -69.8 -49.4 11.8 -12.3 6.1 33 917 A E S S+ 0 0 110 1,-0.2 2,-0.8 2,-0.1 3,-0.4 0.990 78.0 175.3 -56.1 -71.8 9.7 -9.2 7.0 34 918 A G - 0 0 30 1,-0.2 3,-0.3 2,-0.1 -1,-0.2 -0.836 68.6 -0.7 104.9-101.2 6.8 -9.8 4.6 35 919 A N S S+ 0 0 85 -2,-0.8 -1,-0.2 1,-0.2 -20,-0.2 0.800 132.3 55.3 -94.8 -36.8 4.0 -7.2 5.1 36 920 A S S S+ 0 0 90 -3,-0.4 2,-0.2 -22,-0.1 -1,-0.2 -0.024 84.7 131.1 -87.0 31.7 5.7 -5.2 7.9 37 921 A C - 0 0 7 -3,-0.3 -20,-0.5 1,-0.1 4,-0.1 -0.504 55.8-147.3 -85.2 154.8 8.7 -4.7 5.7 38 922 A K S S+ 0 0 78 -2,-0.2 -19,-0.5 -22,-0.1 -20,-0.4 0.684 79.3 70.5 -92.2 -22.2 10.4 -1.3 5.2 39 923 A F S S- 0 0 54 1,-0.1 -17,-0.2 -19,-0.1 -22,-0.1 -0.464 93.1 -93.2 -92.3 166.6 11.4 -2.1 1.6 40 924 A A B -a 22 0A 0 -19,-2.2 -17,-2.7 -2,-0.1 2,-0.4 -0.441 23.5-147.5 -78.7 152.7 9.3 -2.5 -1.5 41 925 A H S S- 0 0 20 1,-0.3 4,-0.2 -19,-0.2 -19,-0.1 -0.613 73.2 -3.2-121.3 70.8 7.9 -5.9 -2.6 42 926 A G S > S- 0 0 8 -2,-0.4 4,-2.0 2,-0.1 3,-0.4 0.244 76.2-102.3 115.6 121.8 7.8 -5.7 -6.4 43 927 A N H > S+ 0 0 104 1,-0.3 4,-1.8 2,-0.2 -1,-0.1 0.846 124.5 51.7 -34.0 -50.8 8.5 -2.9 -8.8 44 928 A A H > S+ 0 0 45 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.954 106.4 51.9 -54.3 -55.9 4.7 -2.5 -9.1 45 929 A E H > S+ 0 0 20 -3,-0.4 4,-2.4 -4,-0.2 3,-0.4 0.915 105.5 56.4 -47.4 -51.3 4.2 -2.2 -5.4 46 930 A L H X S+ 0 0 28 -4,-2.0 4,-2.4 1,-0.2 5,-0.3 0.930 100.1 58.1 -47.0 -55.6 6.9 0.5 -5.1 47 931 A H H X S+ 0 0 107 -4,-1.8 4,-0.8 1,-0.3 -1,-0.2 0.892 109.8 44.2 -41.9 -51.5 5.1 2.7 -7.7 48 932 A E H >X S+ 0 0 24 -4,-1.5 4,-2.6 -3,-0.4 3,-0.8 0.909 109.6 57.2 -62.6 -43.5 2.0 2.7 -5.4 49 933 A W H 3X S+ 0 0 4 -4,-2.4 4,-2.4 1,-0.3 5,-0.4 0.954 97.5 59.3 -52.1 -57.7 4.1 3.3 -2.3 50 934 A E H 3X S+ 0 0 68 -4,-2.4 4,-1.2 1,-0.2 -1,-0.3 0.811 113.5 41.8 -41.6 -35.4 5.7 6.5 -3.7 51 935 A E H X S+ 0 0 38 -4,-2.6 3,-0.7 1,-0.3 4,-0.6 0.855 114.8 41.1 -37.5 -48.0 0.7 6.4 -0.5 53 937 A R H >X S+ 0 0 124 -4,-2.4 4,-1.3 1,-0.2 3,-1.3 0.886 105.2 63.6 -70.7 -40.0 3.5 8.4 1.2 54 938 A D H 3< S+ 0 0 75 -4,-1.2 -1,-0.2 -5,-0.4 4,-0.2 0.656 97.3 62.0 -59.0 -13.9 3.0 11.4 -1.1 55 939 A A H X< S+ 0 0 44 -4,-1.3 3,-0.8 -3,-0.7 -1,-0.3 0.824 97.3 54.5 -81.2 -34.1 -0.4 11.6 0.4 56 940 A L H XX S+ 0 0 69 -3,-1.3 3,-2.6 -4,-0.6 4,-1.8 0.930 95.6 64.9 -65.2 -46.7 0.8 12.2 3.9 57 941 A K T 3< S+ 0 0 121 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.731 77.5 91.2 -49.1 -21.7 2.9 15.2 2.9 58 942 A M T <4 S+ 0 0 152 -3,-0.8 -1,-0.3 1,-0.2 -2,-0.2 0.810 112.1 8.8 -44.6 -33.5 -0.4 16.8 2.1 59 943 A K T <4 S+ 0 0 172 -3,-2.6 -1,-0.2 -4,-0.2 -2,-0.2 0.580 120.7 82.1-120.5 -24.9 -0.3 18.1 5.7 60 944 A L < - 0 0 96 -4,-1.8 2,-0.3 1,-0.0 0, 0.0 -0.415 63.3-151.3 -82.3 160.0 3.2 17.2 6.7 61 945 A N - 0 0 119 1,-0.1 -2,-0.0 -2,-0.1 -3,-0.0 -0.801 18.5-130.7-127.4 169.4 6.3 19.3 5.8 62 946 A K S S+ 0 0 199 -2,-0.3 2,-0.5 1,-0.1 3,-0.3 0.942 84.0 86.0 -84.0 -57.0 10.0 18.7 5.2 63 947 A A + 0 0 84 1,-0.2 -2,-0.1 3,-0.0 -1,-0.1 -0.265 49.2 129.7 -50.4 100.1 11.6 21.4 7.5 64 948 A S - 0 0 110 -2,-0.5 -1,-0.2 1,-0.3 3,-0.1 0.649 66.4 -69.2-123.1 -43.8 11.7 19.4 10.7 65 949 A G - 0 0 44 -3,-0.3 -1,-0.3 1,-0.1 0, 0.0 -0.889 37.7 -89.4 161.5 168.7 15.2 19.8 12.1 66 950 A P - 0 0 126 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.884 40.5-175.3 -69.7 -40.6 18.9 18.9 11.7 67 951 A S + 0 0 109 1,-0.2 2,-1.7 -3,-0.1 -2,-0.0 0.856 11.6 177.0 42.9 42.2 18.7 15.7 13.8 68 952 A S 0 0 112 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.572 360.0 360.0 -79.0 85.4 22.5 15.5 13.4 69 953 A G 0 0 126 -2,-1.7 -1,-0.2 -3,-0.2 -2,-0.1 0.886 360.0 360.0 38.1 360.0 23.1 12.4 15.5