==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-DEC-05 2D9P . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8236.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 279 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 145.9 -48.6 2.8 4.1 2 280 A S + 0 0 126 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.937 360.0 150.1-151.4 123.6 -45.5 4.6 2.7 3 281 A S + 0 0 135 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.878 9.0 169.4-143.6 174.5 -42.0 5.0 4.1 4 282 A G - 0 0 75 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.851 29.8-118.6 174.9 148.8 -38.4 5.4 3.0 5 283 A S + 0 0 129 -2,-0.2 2,-0.2 2,-0.0 -2,-0.0 -0.880 38.8 162.3-104.8 126.2 -34.9 6.1 4.2 6 284 A S + 0 0 115 -2,-0.5 -2,-0.0 1,-0.1 0, 0.0 -0.790 22.0 107.9-132.6 175.3 -33.0 9.2 2.9 7 285 A G + 0 0 40 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 0.720 22.9 176.5 115.7 69.7 -30.1 11.4 3.7 8 286 A D + 0 0 130 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.952 10.4 165.8 -64.5 -51.4 -27.1 10.9 1.4 9 287 A R + 0 0 211 1,-0.2 -1,-0.1 3,-0.0 0, 0.0 0.802 22.1 141.8 35.5 38.1 -25.0 13.7 3.1 10 288 A I + 0 0 113 2,-0.0 -1,-0.2 0, 0.0 2,-0.1 0.469 27.9 121.3 -83.9 -2.2 -22.1 12.1 1.2 11 289 A T + 0 0 116 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.357 33.1 146.5 -64.2 139.2 -20.7 15.6 0.6 12 290 A R - 0 0 193 -2,-0.1 3,-0.3 3,-0.0 -2,-0.0 -0.944 49.2 -82.4-171.5 150.5 -17.2 16.3 1.9 13 291 A Y S S- 0 0 194 -2,-0.3 2,-1.1 1,-0.2 0, 0.0 0.074 75.3 -61.8 -50.2 168.5 -14.0 18.2 1.1 14 292 A Q S S+ 0 0 170 1,-0.1 2,-0.5 2,-0.0 -1,-0.2 -0.392 74.5 158.9 -59.8 95.7 -11.5 16.8 -1.4 15 293 A V + 0 0 28 -2,-1.1 54,-0.1 -3,-0.3 53,-0.1 -0.898 13.7 142.0-128.6 103.1 -10.6 13.6 0.4 16 294 A V + 0 0 38 -2,-0.5 2,-0.2 52,-0.1 46,-0.2 0.655 45.1 100.8-108.7 -26.2 -9.1 10.8 -1.7 17 295 A N - 0 0 31 44,-0.2 73,-1.5 73,-0.1 2,-0.4 -0.437 56.1-164.6 -65.6 128.6 -6.6 9.4 0.8 18 296 A L E -AB 60 89A 0 42,-3.1 42,-2.0 71,-0.2 2,-0.6 -0.907 14.3-137.4-118.9 146.0 -7.8 6.3 2.5 19 297 A Y E -AB 59 88A 71 69,-3.2 69,-1.7 -2,-0.4 2,-0.4 -0.895 18.7-165.5-106.1 115.6 -6.5 4.6 5.6 20 298 A V E +AB 58 87A 0 38,-2.0 38,-2.3 -2,-0.6 2,-0.3 -0.848 11.2 175.4-103.0 133.1 -6.3 0.8 5.5 21 299 A K E +AB 57 86A 68 65,-1.7 65,-1.2 -2,-0.4 36,-0.3 -0.853 51.1 43.2-130.8 166.4 -5.8 -1.3 8.7 22 300 A N - 0 0 44 34,-1.9 2,-0.9 -2,-0.3 35,-0.2 0.965 65.7-178.8 63.6 54.6 -5.7 -5.0 9.6 23 301 A L - 0 0 6 33,-0.4 -1,-0.2 -3,-0.2 34,-0.1 -0.774 24.5-130.0 -91.4 105.4 -3.5 -6.0 6.7 24 302 A D > - 0 0 33 -2,-0.9 3,-1.0 59,-0.2 32,-0.1 -0.141 20.2-115.0 -51.4 145.0 -2.9 -9.8 6.9 25 303 A D T 3 S+ 0 0 118 1,-0.3 -1,-0.1 30,-0.1 31,-0.0 0.831 118.2 56.9 -52.1 -34.0 0.8 -10.8 6.5 26 304 A G T 3 S+ 0 0 41 2,-0.1 2,-0.4 28,-0.0 -1,-0.3 0.854 89.7 85.3 -67.6 -35.2 -0.2 -12.6 3.3 27 305 A I < - 0 0 14 -3,-1.0 2,-0.2 4,-0.1 3,-0.0 -0.554 63.6-176.3 -72.8 123.9 -1.6 -9.3 1.8 28 306 A D > - 0 0 80 -2,-0.4 4,-2.4 1,-0.1 5,-0.2 -0.677 42.8 -86.3-116.0 171.3 1.2 -7.3 0.2 29 307 A D H > S+ 0 0 61 1,-0.2 4,-2.5 -2,-0.2 5,-0.4 0.910 127.3 47.7 -38.0 -68.4 1.3 -3.8 -1.5 30 308 A E H > S+ 0 0 132 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.903 110.6 53.1 -40.9 -56.5 0.3 -5.2 -4.9 31 309 A R H > S+ 0 0 98 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.933 112.5 43.6 -45.9 -58.5 -2.6 -7.1 -3.3 32 310 A L H >< S+ 0 0 3 -4,-2.4 3,-1.7 1,-0.3 -2,-0.2 0.970 117.3 43.5 -52.7 -62.7 -3.9 -4.0 -1.6 33 311 A R H >X S+ 0 0 131 -4,-2.5 4,-1.2 1,-0.3 3,-0.7 0.760 114.0 54.8 -55.9 -24.6 -3.5 -1.7 -4.6 34 312 A K H 3< S+ 0 0 104 -4,-2.6 -1,-0.3 -5,-0.4 -2,-0.2 0.713 103.9 53.6 -81.7 -22.2 -4.9 -4.6 -6.6 35 313 A A T << S+ 0 0 23 -3,-1.7 -1,-0.2 -4,-1.4 -2,-0.2 0.192 111.9 46.1 -96.2 15.1 -8.0 -4.8 -4.4 36 314 A F T X> S+ 0 0 0 -3,-0.7 3,-2.4 -5,-0.1 4,-1.7 0.603 91.2 74.3-123.7 -32.4 -8.7 -1.1 -4.9 37 315 A S T 3< S+ 0 0 58 -4,-1.2 -2,-0.1 1,-0.3 -3,-0.1 0.903 84.7 69.7 -50.4 -45.9 -8.3 -0.6 -8.7 38 316 A P T 34 S+ 0 0 99 0, 0.0 -1,-0.3 0, 0.0 3,-0.1 0.675 108.5 38.9 -48.0 -17.3 -11.7 -2.3 -9.2 39 317 A F T <4 S- 0 0 44 -3,-2.4 2,-0.3 1,-0.4 -2,-0.2 0.847 130.3 -30.2-100.1 -52.3 -13.2 0.8 -7.6 40 318 A G S < S- 0 0 5 -4,-1.7 -1,-0.4 28,-0.1 -4,-0.0 -0.984 73.9 -67.2-162.1 168.3 -11.1 3.6 -9.0 41 319 A T - 0 0 92 -2,-0.3 22,-1.1 -3,-0.1 2,-0.4 -0.260 45.3-148.2 -61.9 147.9 -7.7 4.7 -10.3 42 320 A I E +C 62 0A 25 20,-0.2 20,-0.2 1,-0.1 3,-0.1 -0.976 27.4 167.3-125.1 134.1 -4.8 4.8 -7.8 43 321 A T E S+ 0 0 104 18,-0.9 2,-0.4 -2,-0.4 19,-0.1 0.696 77.4 31.4-110.7 -33.2 -1.8 7.1 -7.8 44 322 A S E + 0 0 58 17,-0.5 17,-2.5 2,-0.0 2,-0.4 -0.928 68.2 148.8-134.4 109.7 -0.3 6.4 -4.3 45 323 A A E +C 60 0A 32 -2,-0.4 2,-0.3 15,-0.2 15,-0.2 -0.957 11.0 137.7-145.0 122.5 -0.6 3.0 -2.7 46 324 A K E -C 59 0A 107 13,-2.1 13,-2.6 -2,-0.4 2,-0.4 -0.986 38.1-129.0-160.5 153.3 1.8 1.3 -0.2 47 325 A V E -C 58 0A 7 -2,-0.3 2,-0.3 11,-0.2 11,-0.3 -0.900 28.9-114.8-111.7 136.9 1.8 -0.7 3.0 48 326 A M E - 0 0 55 9,-1.9 7,-0.8 -2,-0.4 8,-0.7 -0.508 36.5-172.1 -70.0 127.0 3.8 0.1 6.0 49 327 A M E -C 54 0A 78 -2,-0.3 5,-0.2 5,-0.2 -1,-0.0 -0.962 27.7-148.0-125.2 140.8 6.5 -2.6 6.7 50 328 A E - 0 0 102 3,-1.5 4,-0.1 -2,-0.4 -2,-0.1 -0.091 69.8 -78.3 -94.7 34.3 8.8 -3.0 9.7 51 329 A G S S+ 0 0 65 2,-0.3 3,-0.1 1,-0.1 -1,-0.1 0.974 118.0 10.0 68.9 85.6 11.5 -4.5 7.6 52 330 A G S S+ 0 0 77 1,-0.2 2,-0.3 0, 0.0 -1,-0.1 -0.194 124.7 56.1 111.1 -41.2 10.6 -8.1 6.9 53 331 A R S S- 0 0 186 0, 0.0 -3,-1.5 0, 0.0 2,-0.7 -0.771 84.7-108.2-121.6 167.2 7.0 -8.1 8.2 54 332 A S E - C 0 49A 21 -2,-0.3 -5,-0.2 -5,-0.2 -6,-0.1 -0.852 18.9-147.7-101.0 109.1 3.9 -6.1 7.6 55 333 A K E - 0 0 127 -7,-0.8 -1,-0.2 -2,-0.7 -6,-0.1 0.879 46.6-105.7 -35.7 -58.7 3.0 -3.7 10.4 56 334 A G E S+ 0 0 16 -8,-0.7 -34,-1.9 1,-0.4 -33,-0.4 0.552 86.1 64.1 132.8 27.8 -0.7 -4.1 9.7 57 335 A F E +A 21 0A 67 -9,-0.5 -9,-1.9 -36,-0.3 -1,-0.4 -0.934 47.9 171.3-171.3 147.5 -1.8 -0.9 8.0 58 336 A G E -AC 20 47A 0 -38,-2.3 -38,-2.0 -2,-0.3 2,-0.4 -0.783 26.4-108.5-146.3-170.4 -1.2 1.1 4.8 59 337 A F E -AC 19 46A 61 -13,-2.6 -13,-2.1 -2,-0.2 2,-0.4 -0.988 20.9-170.7-134.2 142.1 -2.4 4.0 2.7 60 338 A V E -AC 18 45A 0 -42,-2.0 -42,-3.1 -2,-0.4 2,-0.4 -0.997 3.4-164.7-135.8 132.5 -4.3 4.3 -0.6 61 339 A C E - 0 0 30 -17,-2.5 -18,-0.9 -2,-0.4 -17,-0.5 -0.900 5.7-160.8-117.6 145.5 -5.0 7.3 -2.8 62 340 A F E - C 0 42A 6 -2,-0.4 -20,-0.2 -20,-0.2 -46,-0.1 -0.652 29.6-114.9-116.8 174.2 -7.4 7.6 -5.7 63 341 A S S S+ 0 0 79 -22,-1.1 -21,-0.1 1,-0.2 -1,-0.1 0.896 100.0 20.7 -75.6 -42.4 -7.9 10.0 -8.6 64 342 A S S > S- 0 0 56 -23,-0.2 4,-1.8 1,-0.1 -1,-0.2 -0.979 74.1-125.6-132.3 143.3 -11.1 11.5 -7.4 65 343 A P H > S+ 0 0 39 0, 0.0 4,-3.0 0, 0.0 3,-0.5 0.931 108.7 57.1 -47.2 -58.2 -12.8 11.6 -3.9 66 344 A E H > S+ 0 0 155 1,-0.3 4,-1.8 2,-0.2 -50,-0.0 0.900 107.2 48.6 -40.6 -56.2 -16.0 10.0 -5.1 67 345 A E H > S+ 0 0 88 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.890 112.8 48.9 -53.8 -42.5 -14.1 7.0 -6.3 68 346 A A H X S+ 0 0 0 -4,-1.8 4,-1.8 -3,-0.5 -1,-0.2 0.912 105.1 59.2 -64.8 -44.0 -12.3 6.8 -3.0 69 347 A T H >X S+ 0 0 57 -4,-3.0 4,-1.1 2,-0.2 3,-0.6 0.960 102.8 50.3 -48.6 -65.2 -15.5 7.1 -1.0 70 348 A K H >X S+ 0 0 135 -4,-1.8 4,-2.8 1,-0.3 3,-1.6 0.909 105.1 56.9 -38.6 -65.0 -17.1 4.0 -2.4 71 349 A A H 3X>S+ 0 0 0 -4,-1.4 4,-2.7 1,-0.3 5,-0.6 0.862 97.4 63.8 -34.5 -55.2 -14.0 1.8 -1.7 72 350 A V H <5S+ 0 0 9 -4,-2.7 3,-2.2 -5,-0.5 10,-0.2 0.805 92.2 98.3-107.1 -59.8 -14.2 -2.6 1.2 76 354 A N T 3<