==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-DEC-05 2D9R . COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; . AUTHOR T.A.BINKOWSKI,C.HATZOS,S.MOY,F.COLLART,A.JOACHIMIAK,MIDWEST . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5320.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 62.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 33 38.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 20 A S 0 0 149 0, 0.0 81,-0.0 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 93.9 -11.4 24.8 15.8 2 21 A P - 0 0 51 0, 0.0 2,-0.5 0, 0.0 81,-0.2 -0.305 360.0-125.3 -71.4 150.3 -7.8 24.2 14.8 3 22 A I E -A 82 0A 60 79,-2.5 79,-2.2 2,-0.0 2,-0.3 -0.847 37.9-170.3 -86.2 133.2 -6.0 20.8 14.6 4 23 A E E +A 81 0A 93 -2,-0.5 2,-0.3 77,-0.2 77,-0.2 -0.960 15.7 149.4-134.6 143.1 -2.9 21.1 16.7 5 24 A F E -A 80 0A 24 75,-2.2 75,-3.2 -2,-0.3 2,-0.3 -0.973 42.7-108.5-166.4 149.1 0.2 18.9 17.2 6 25 A D E -A 79 0A 107 -2,-0.3 2,-0.3 73,-0.2 73,-0.2 -0.715 41.0-179.3 -79.1 143.9 3.8 18.9 18.0 7 26 A A E -A 78 0A 11 71,-2.3 71,-2.9 -2,-0.3 2,-0.4 -0.997 29.1-120.1-145.4 145.8 6.1 18.0 15.1 8 27 A I E -A 77 0A 64 -2,-0.3 2,-0.5 69,-0.2 13,-0.4 -0.715 35.0-118.9 -82.5 133.2 9.8 17.6 14.4 9 28 A I - 0 0 1 67,-3.0 66,-2.9 -2,-0.4 2,-0.2 -0.658 37.1-162.8 -71.1 121.7 11.1 20.0 11.7 10 29 A R E -B 19 0A 112 9,-3.3 9,-2.1 -2,-0.5 2,-0.3 -0.665 8.7-168.9-105.0 160.3 12.5 17.7 8.9 11 30 A Q E -B 18 0A 96 -2,-0.2 7,-0.2 7,-0.2 5,-0.0 -0.987 29.6-117.7-149.2 138.0 14.8 18.6 6.0 12 31 A V > - 0 0 80 5,-0.6 3,-2.1 -2,-0.3 5,-0.1 -0.689 57.4 -97.5 -71.4 126.5 16.0 16.9 2.9 13 32 A P T 3 S+ 0 0 104 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.218 103.5 9.2 -56.5 133.0 19.7 16.6 3.5 14 33 A D T 3 S+ 0 0 153 1,-0.3 2,-0.2 2,-0.0 -2,-0.0 0.432 104.9 106.9 79.8 5.1 21.8 19.3 1.9 15 34 A X < - 0 0 104 -3,-2.1 -1,-0.3 2,-0.2 0, 0.0 -0.698 69.3-133.2-105.7 163.9 18.8 21.5 0.9 16 35 A D S S+ 0 0 116 -2,-0.2 2,-0.2 -3,-0.1 -1,-0.1 0.604 76.4 90.3 -89.8 -17.0 17.7 24.8 2.5 17 36 A A - 0 0 67 -5,-0.1 -5,-0.6 46,-0.1 2,-0.3 -0.529 54.9-166.2 -90.7 155.1 14.0 24.0 2.8 18 37 A A E +BC 11 62A 4 44,-0.9 44,-2.9 -2,-0.2 2,-0.3 -0.837 6.6 178.6-131.4 166.4 12.3 22.3 5.8 19 38 A Y E -BC 10 61A 53 -9,-2.1 -9,-3.3 42,-0.3 2,-0.4 -0.966 22.8-125.0-159.1 167.6 8.9 20.8 6.4 20 39 A V E - C 0 60A 0 40,-2.4 40,-2.2 -2,-0.3 2,-0.3 -0.948 24.8-125.7-118.0 142.0 6.7 19.0 8.9 21 40 A E E - C 0 59A 99 -13,-0.4 38,-0.2 -2,-0.4 -13,-0.1 -0.697 25.3-124.6 -78.5 137.9 5.0 15.7 8.4 22 41 A I - 0 0 13 36,-2.7 2,-0.5 -2,-0.3 36,-0.3 -0.810 19.1-150.3 -86.4 117.0 1.2 15.8 9.0 23 42 A P + 0 0 86 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.070 66.9 58.1 -88.1 34.4 0.6 13.1 11.7 24 43 A F S S- 0 0 49 -2,-0.5 2,-1.4 34,-0.1 3,-0.1 -0.955 100.7 -77.1-149.4 172.0 -3.0 12.1 10.7 25 44 A D > - 0 0 83 -2,-0.3 4,-2.6 1,-0.2 5,-0.2 -0.538 43.6-176.8 -77.4 92.9 -4.9 10.8 7.7 26 45 A V H >>S+ 0 0 0 -2,-1.4 4,-2.9 30,-0.3 5,-0.8 0.869 79.1 57.2 -58.8 -39.7 -5.2 14.0 5.6 27 46 A K H >5S+ 0 0 93 3,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.954 113.3 39.3 -60.4 -49.8 -7.3 12.3 2.9 28 47 A T H 45S+ 0 0 107 2,-0.2 -2,-0.2 1,-0.2 -1,-0.2 0.946 121.2 43.5 -63.6 -46.9 -9.9 11.2 5.4 29 48 A V H <5S+ 0 0 77 -4,-2.6 -2,-0.2 1,-0.2 -3,-0.2 0.912 133.9 12.8 -70.6 -44.6 -9.9 14.5 7.4 30 49 A Y H <5S- 0 0 51 -4,-2.9 -3,-0.2 1,-0.3 -1,-0.2 0.581 106.4-112.6-108.1 -14.5 -9.8 17.1 4.6 31 50 A G << - 0 0 31 -4,-1.5 -1,-0.3 -5,-0.8 -2,-0.1 -0.363 52.7 -35.3 97.5 174.1 -10.6 15.1 1.5 32 51 A K S S+ 0 0 161 -2,-0.1 2,-0.0 -4,-0.1 -5,-0.0 -0.101 97.2 17.3 -66.6 160.4 -8.5 14.2 -1.6 33 52 A G S S- 0 0 21 2,-0.1 2,-0.1 18,-0.0 -3,-0.1 -0.227 103.6 -16.5 85.0-170.6 -5.8 16.4 -3.2 34 53 A R - 0 0 169 17,-0.1 2,-0.5 18,-0.1 17,-0.2 -0.461 60.4-146.1 -71.3 149.7 -3.8 19.4 -2.0 35 54 A V E -D 50 0A 14 15,-2.1 15,-2.9 -2,-0.1 2,-0.4 -0.966 2.2-146.3-125.3 118.6 -5.2 21.3 1.0 36 55 A R E -D 49 0A 119 -2,-0.5 49,-2.8 49,-0.3 2,-0.3 -0.700 31.5-178.4 -79.9 129.1 -4.9 25.1 1.4 37 56 A V E -DE 48 84A 0 11,-3.1 11,-1.9 -2,-0.4 2,-0.7 -0.946 39.0-135.3-131.6 149.2 -4.5 25.9 5.2 38 57 A N E +DE 47 83A 71 45,-3.2 45,-1.6 -2,-0.3 2,-0.2 -0.958 48.0 177.5 -93.5 113.8 -4.1 28.7 7.6 39 58 A A E -DE 46 82A 3 7,-3.6 7,-2.9 -2,-0.7 2,-0.3 -0.736 23.6-155.8-114.1 162.0 -1.3 27.3 9.7 40 59 A T E -DE 45 81A 35 41,-1.7 41,-1.7 5,-0.3 2,-0.5 -0.988 3.5-159.5-132.3 148.6 0.8 28.5 12.7 41 60 A F E > S-DE 44 80A 0 3,-1.8 3,-2.2 -2,-0.3 39,-0.2 -0.984 89.1 -21.4-125.0 114.5 4.3 27.3 13.7 42 61 A D T 3 S- 0 0 63 37,-2.9 -1,-0.1 -2,-0.5 38,-0.1 0.909 131.4 -50.6 43.0 46.8 4.8 28.2 17.4 43 62 A G T 3 S+ 0 0 58 36,-0.5 -1,-0.3 1,-0.2 37,-0.1 0.327 108.5 129.1 84.8 -9.8 2.1 30.8 16.9 44 63 A Y E < -D 41 0A 97 -3,-2.2 -3,-1.8 1,-0.1 -1,-0.2 -0.735 59.1-125.0 -86.7 119.9 3.6 32.3 13.7 45 64 A P E +D 40 0A 92 0, 0.0 2,-0.3 0, 0.0 -5,-0.3 -0.299 34.4 169.9 -72.3 143.1 1.0 32.5 11.0 46 65 A Y E -D 39 0A 59 -7,-2.9 -7,-3.6 -2,-0.1 2,-0.5 -0.951 21.3-153.7-150.3 135.0 1.5 30.9 7.6 47 66 A T E +D 38 0A 59 -2,-0.3 2,-0.2 -9,-0.2 -9,-0.2 -0.925 46.1 104.7-108.2 125.6 -0.9 30.3 4.6 48 67 A G E -D 37 0A 3 -11,-1.9 -11,-3.1 -2,-0.5 2,-0.4 -0.843 59.1 -62.1-171.4-157.0 0.1 27.4 2.3 49 68 A Y E -D 36 0A 116 -13,-0.2 2,-0.6 -2,-0.2 12,-0.5 -0.935 17.7-143.3-125.3 129.2 -0.6 23.9 1.2 50 69 A I E -DF 35 60A 1 -15,-2.9 -15,-2.1 -2,-0.4 2,-0.3 -0.804 38.8-164.8 -75.2 124.3 -0.5 20.4 2.7 51 70 A V E - F 0 59A 32 8,-2.5 8,-2.3 -2,-0.6 2,-0.3 -0.868 17.4-119.7-120.5 154.7 0.8 18.4 -0.2 52 71 A R E + F 0 58A 121 -2,-0.3 6,-0.2 6,-0.2 3,-0.1 -0.655 26.6 175.4 -89.9 134.9 0.9 14.7 -0.9 53 72 A X S S- 0 0 119 4,-3.1 2,-0.7 -2,-0.3 -1,-0.1 0.223 73.5 -22.1-104.3-117.1 4.2 13.0 -1.4 54 73 A G S > S- 0 0 57 -2,-0.1 3,-1.2 1,-0.1 -1,-0.2 -0.821 109.4 -66.4 -88.9 121.8 3.8 9.2 -1.8 55 74 A L T 3 S+ 0 0 105 -2,-0.7 3,-0.1 1,-0.3 -1,-0.1 -0.209 122.9 17.7 -48.6 129.6 0.5 8.4 -0.2 56 75 A P T 3 S+ 0 0 102 0, 0.0 2,-0.3 0, 0.0 -30,-0.3 -0.882 96.3 100.1-129.4 34.0 0.1 8.7 2.6 57 76 A C < - 0 0 56 -3,-1.2 -4,-3.1 -32,-0.1 2,-0.4 -0.422 48.3-179.9 -1.3 90.6 3.0 10.9 3.4 58 77 A H E - F 0 52A 8 -36,-0.3 -36,-2.7 -2,-0.3 2,-0.3 -0.993 2.2-176.7-123.9 138.9 1.6 14.5 3.6 59 78 A I E -CF 21 51A 25 -8,-2.3 -8,-2.5 -2,-0.4 2,-0.4 -0.907 21.9-151.1-131.2 160.0 3.8 17.5 4.4 60 79 A L E -CF 20 50A 1 -40,-2.2 -40,-2.4 -2,-0.3 -10,-0.1 -0.997 30.1-124.3-127.0 126.9 3.6 21.2 5.0 61 80 A G E -C 19 0A 34 -12,-0.5 2,-0.6 -2,-0.4 -42,-0.3 -0.353 13.0-149.5 -70.1 146.0 6.7 23.3 4.1 62 81 A L E -C 18 0A 2 -44,-2.9 -44,-0.9 -2,-0.1 -1,-0.1 -0.953 22.1-134.1-118.2 105.4 8.3 25.5 6.7 63 82 A R > - 0 0 127 -2,-0.6 4,-2.2 -46,-0.1 3,-0.2 -0.238 12.8-121.4 -64.8 149.3 9.8 28.6 5.0 64 83 A Q H > S+ 0 0 96 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.863 112.1 54.2 -53.7 -40.9 13.4 29.8 5.9 65 84 A D H > S+ 0 0 48 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.871 108.6 47.3 -69.2 -35.2 12.1 33.2 7.0 66 85 A I H > S+ 0 0 2 -3,-0.2 4,-2.1 2,-0.2 5,-0.2 0.904 107.7 56.5 -69.0 -40.8 9.5 31.7 9.4 67 86 A R H X>S+ 0 0 30 -4,-2.2 5,-2.1 1,-0.2 4,-0.9 0.889 109.4 46.5 -56.4 -39.5 12.2 29.4 10.9 68 87 A R H <5S+ 0 0 173 -4,-1.9 -1,-0.2 3,-0.2 -2,-0.2 0.871 108.3 56.8 -67.6 -38.4 14.3 32.6 11.6 69 88 A A H <5S+ 0 0 59 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.861 119.1 30.0 -62.0 -36.7 11.3 34.3 13.1 70 89 A I H <5S- 0 0 34 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.468 106.0-124.3-104.1 -3.7 10.7 31.5 15.7 71 90 A G T <5 + 0 0 57 -4,-0.9 2,-0.4 -5,-0.2 -3,-0.2 0.909 62.8 136.2 64.2 46.1 14.4 30.5 16.0 72 91 A K < - 0 0 63 -5,-2.1 -1,-0.2 -6,-0.1 -2,-0.2 -0.988 28.7-178.2-128.8 138.1 13.8 26.8 15.1 73 92 A Q > - 0 0 128 -2,-0.4 3,-2.8 1,-0.1 -64,-0.3 -0.738 45.2 -56.7-126.0 168.4 15.8 24.6 12.8 74 93 A P T 3 S+ 0 0 33 0, 0.0 -64,-0.2 0, 0.0 -1,-0.1 -0.213 125.8 30.7 -44.3 132.3 15.7 20.9 11.4 75 94 A G T 3 S+ 0 0 52 -66,-2.9 2,-0.1 1,-0.4 -65,-0.1 -0.049 96.8 111.4 100.2 -29.9 15.7 18.6 14.4 76 95 A D S < S- 0 0 56 -3,-2.8 -67,-3.0 -68,-0.1 -1,-0.4 -0.458 70.4-119.5 -73.2 149.2 13.8 21.1 16.6 77 96 A S E -A 8 0A 57 -69,-0.2 2,-0.3 -2,-0.1 -69,-0.2 -0.677 30.3-170.7 -82.4 143.4 10.2 20.4 17.7 78 97 A V E -A 7 0A 0 -71,-2.9 -71,-2.3 -2,-0.3 2,-0.6 -0.995 23.3-127.5-135.6 138.7 7.5 23.0 16.6 79 98 A Y E -A 6 0A 93 -2,-0.3 -37,-2.9 -73,-0.2 -36,-0.5 -0.805 33.6-167.3 -86.2 121.8 3.9 23.3 17.7 80 99 A V E -AE 5 41A 0 -75,-3.2 -75,-2.2 -2,-0.6 2,-0.3 -0.877 12.0-169.8-113.6 139.1 1.7 23.4 14.6 81 100 A T E -AE 4 40A 22 -41,-1.7 -41,-1.7 -2,-0.4 2,-0.4 -0.954 8.9-161.5-122.4 153.5 -2.0 24.4 14.2 82 101 A L E +AE 3 39A 1 -79,-2.2 -79,-2.5 -2,-0.3 -43,-0.2 -0.997 15.9 174.7-138.9 136.5 -4.1 23.9 11.0 83 102 A L E - E 0 38A 69 -45,-1.6 -45,-3.2 -2,-0.4 -2,-0.0 -0.991 33.2-121.8-136.9 127.3 -7.3 25.4 9.7 84 103 A P E E 0 37A 76 0, 0.0 -47,-0.3 0, 0.0 -49,-0.0 -0.346 360.0 360.0 -72.8 149.7 -8.6 24.5 6.2 85 104 A L 0 0 103 -49,-2.8 -49,-0.3 -2,-0.0 -38,-0.0 -0.628 360.0 360.0-119.9 360.0 -9.2 27.3 3.6