==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-DEC-05 2D9T . COMPND 2 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6640.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 51.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 30.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-102.5 11.1 18.8 -2.4 2 2 A S - 0 0 122 3,-0.0 2,-0.4 0, 0.0 3,-0.1 -0.985 360.0-146.1-140.3 126.8 10.5 18.6 1.4 3 3 A S S S+ 0 0 136 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.748 71.2 57.1 -93.8 135.7 9.4 15.7 3.4 4 4 A G + 0 0 81 -2,-0.4 2,-0.4 1,-0.2 -1,-0.1 0.776 62.8 136.2 112.3 58.5 7.2 16.3 6.5 5 5 A S - 0 0 113 2,-0.1 -1,-0.2 -3,-0.1 2,-0.1 -0.985 45.4-132.1-139.3 126.1 4.1 18.2 5.6 6 6 A S + 0 0 122 -2,-0.4 2,-0.2 2,-0.0 0, 0.0 -0.444 58.1 79.6 -74.8 146.7 0.5 17.5 6.7 7 7 A G - 0 0 74 -2,-0.1 2,-0.3 2,-0.0 -2,-0.1 -0.814 57.1-121.3 144.2 175.8 -2.3 17.4 4.2 8 8 A K - 0 0 148 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.901 15.3-165.4-158.7 125.1 -4.0 15.3 1.5 9 9 A V - 0 0 103 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.901 14.7-137.3-115.3 142.3 -4.5 15.8 -2.2 10 10 A W - 0 0 28 -2,-0.4 24,-0.1 51,-0.0 46,-0.0 -0.516 19.7-172.8 -93.0 162.7 -6.9 13.9 -4.5 11 11 A K > - 0 0 120 -2,-0.2 2,-1.0 3,-0.1 3,-0.8 -0.993 36.7 -89.7-154.0 154.8 -6.2 12.6 -8.0 12 12 A P T 3 S+ 0 0 90 0, 0.0 20,-0.2 0, 0.0 21,-0.1 -0.528 112.7 34.5 -69.8 99.8 -8.0 11.0 -11.0 13 13 A G T 3 S+ 0 0 51 18,-1.6 2,-0.4 -2,-1.0 19,-0.1 0.612 85.6 117.2 126.0 31.4 -7.7 7.3 -10.3 14 14 A D < - 0 0 73 -3,-0.8 17,-2.9 17,-0.4 2,-0.3 -0.992 61.0-124.4-131.9 128.8 -7.8 6.8 -6.6 15 15 A E E +A 30 0A 88 -2,-0.4 47,-1.1 15,-0.3 15,-0.3 -0.535 44.8 155.6 -72.3 127.2 -10.5 4.9 -4.6 16 16 A C E -AB 29 61A 0 13,-2.0 13,-1.1 -2,-0.3 2,-0.6 -0.904 44.0-101.6-145.1 171.7 -12.1 7.1 -1.9 17 17 A F E -AB 28 60A 63 43,-2.4 43,-1.7 -2,-0.3 2,-0.4 -0.888 35.4-172.8-104.7 119.6 -15.3 7.4 0.1 18 18 A A E -AB 27 59A 0 9,-2.0 9,-1.7 -2,-0.6 2,-0.6 -0.890 27.4-116.8-113.5 142.1 -17.8 10.0 -1.1 19 19 A L E -A 26 0A 45 39,-1.1 7,-0.2 -2,-0.4 36,-0.1 -0.654 36.2-121.2 -79.2 115.5 -21.0 11.1 0.8 20 20 A Y > - 0 0 44 5,-1.9 4,-0.7 -2,-0.6 -1,-0.1 -0.073 7.0-136.0 -51.6 153.9 -24.1 10.2 -1.4 21 21 A W T 4 S+ 0 0 147 2,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.480 106.0 34.1 -91.9 -4.7 -26.3 13.1 -2.4 22 22 A E T 4 S+ 0 0 135 3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.474 131.9 29.3-123.0 -13.5 -29.4 11.0 -1.5 23 23 A D T 4 S- 0 0 63 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.541 82.0-148.6-120.4 -19.9 -28.1 9.0 1.4 24 24 A N < + 0 0 109 -4,-0.7 2,-0.3 1,-0.2 -3,-0.1 0.780 56.5 130.5 52.5 27.2 -25.5 11.5 2.8 25 25 A K - 0 0 117 -7,-0.1 -5,-1.9 1,-0.0 2,-0.5 -0.865 69.4-102.7-113.6 146.9 -23.6 8.3 3.9 26 26 A F E +A 19 0A 98 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.530 50.7 170.9 -69.4 115.9 -20.0 7.5 3.3 27 27 A Y E -A 18 0A 60 -9,-1.7 -9,-2.0 -2,-0.5 -11,-0.1 -0.942 38.2 -90.9-129.4 150.7 -19.8 5.0 0.4 28 28 A R E +A 17 0A 96 -2,-0.3 18,-0.9 -11,-0.2 19,-0.5 -0.146 58.4 143.8 -55.3 151.1 -16.9 3.6 -1.6 29 29 A A E -AC 16 45A 5 -13,-1.1 -13,-2.0 16,-0.2 2,-0.3 -0.957 40.6-117.0-170.7-176.4 -15.9 5.4 -4.8 30 30 A E E -AC 15 44A 58 14,-1.2 14,-2.4 -15,-0.3 2,-0.7 -0.962 32.6-109.6-146.7 124.9 -13.1 6.5 -7.0 31 31 A V E + C 0 43A 0 -17,-2.9 -18,-1.6 -2,-0.3 -17,-0.4 -0.325 37.5 178.0 -54.5 100.3 -11.9 10.0 -7.9 32 32 A E E - 0 0 75 10,-2.0 2,-0.3 -2,-0.7 11,-0.2 0.948 64.0 -24.7 -71.7 -51.0 -13.1 10.3 -11.5 33 33 A A E - C 0 42A 35 9,-1.8 9,-3.0 -3,-0.1 -1,-0.3 -0.897 60.8-128.5-167.2 134.6 -11.9 13.8 -12.1 34 34 A L E - C 0 41A 75 -2,-0.3 2,-0.5 7,-0.2 7,-0.2 -0.265 30.9-106.8 -79.5 170.1 -11.2 16.9 -10.0 35 35 A H - 0 0 82 5,-0.9 3,-0.4 1,-0.1 4,-0.1 -0.874 15.5-133.6-104.4 129.0 -12.7 20.4 -10.7 36 36 A S S S+ 0 0 118 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.893 106.9 57.1 -41.1 -53.2 -10.4 23.2 -12.0 37 37 A S S S- 0 0 93 1,-0.1 -1,-0.2 -3,-0.1 -3,-0.0 0.928 109.5-124.6 -45.5 -57.4 -11.8 25.6 -9.4 38 38 A G S S+ 0 0 46 -3,-0.4 -2,-0.1 2,-0.3 3,-0.1 0.765 82.6 85.5 110.4 43.0 -10.8 23.3 -6.6 39 39 A M S S+ 0 0 127 1,-0.5 17,-2.8 -4,-0.1 18,-0.4 0.557 85.1 29.4-132.2 -56.9 -14.0 22.6 -4.6 40 40 A T E - D 0 55A 28 15,-0.3 -5,-0.9 16,-0.1 -1,-0.5 -0.710 60.6-168.1-110.9 163.1 -16.0 19.7 -6.0 41 41 A A E -CD 34 54A 3 13,-2.5 13,-1.9 -2,-0.2 2,-0.7 -0.996 27.9-110.3-150.7 150.1 -14.9 16.6 -7.9 42 42 A V E -CD 33 53A 53 -9,-3.0 -10,-2.0 -2,-0.3 -9,-1.8 -0.728 39.3-178.8 -85.8 112.7 -16.6 13.8 -9.9 43 43 A V E -CD 31 52A 0 9,-1.9 9,-1.6 -2,-0.7 2,-0.5 -0.924 22.0-134.2-115.8 137.3 -16.4 10.5 -8.0 44 44 A K E -CD 30 51A 77 -14,-2.4 -14,-1.2 -2,-0.4 2,-0.5 -0.771 18.0-138.0 -92.0 126.4 -17.7 7.2 -9.3 45 45 A F E >>> -CD 29 50A 1 5,-2.5 4,-1.6 -2,-0.5 3,-0.7 -0.705 3.8-154.9 -86.3 127.5 -19.7 5.2 -6.7 46 46 A T T 345S+ 0 0 86 -18,-0.9 -1,-0.1 -2,-0.5 -17,-0.1 0.852 83.7 83.4 -67.5 -35.3 -19.0 1.4 -6.7 47 47 A D T 345S- 0 0 77 -19,-0.5 -1,-0.2 1,-0.2 -18,-0.1 0.835 128.9 -18.4 -34.5 -46.9 -22.4 0.7 -5.3 48 48 A Y T <45S- 0 0 181 -3,-0.7 -2,-0.2 2,-0.1 -1,-0.2 0.559 95.3-104.0-132.7 -39.9 -23.6 0.8 -8.9 49 49 A G T <5 + 0 0 28 -4,-1.6 2,-0.3 1,-0.3 -3,-0.2 0.714 67.6 139.1 112.5 35.0 -21.0 2.6 -10.9 50 50 A N E < -D 45 0A 52 -5,-0.6 -5,-2.5 -7,-0.0 -1,-0.3 -0.836 50.3-116.9-111.7 148.8 -22.5 6.1 -11.5 51 51 A Y E -D 44 0A 128 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.546 31.3-176.6 -82.9 147.2 -20.8 9.5 -11.3 52 52 A E E -D 43 0A 51 -9,-1.6 -9,-1.9 -2,-0.2 2,-0.9 -0.990 29.0-121.8-147.8 135.6 -21.8 12.1 -8.7 53 53 A E E +D 42 0A 145 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.2 -0.665 45.3 163.2 -80.2 106.8 -20.7 15.6 -8.0 54 54 A V E -D 41 0A 11 -13,-1.9 -13,-2.5 -2,-0.9 -34,-0.1 -0.945 39.2-105.7-127.4 148.0 -19.4 15.7 -4.4 55 55 A L E > -D 40 0A 66 -2,-0.3 3,-1.2 -15,-0.2 -15,-0.3 -0.327 22.1-128.6 -68.5 151.0 -17.3 18.2 -2.5 56 56 A L G > S+ 0 0 42 -17,-2.8 3,-1.2 1,-0.3 -1,-0.1 0.774 109.0 63.2 -70.4 -26.3 -13.6 17.4 -1.8 57 57 A S G 3 S+ 0 0 100 -18,-0.4 -1,-0.3 1,-0.3 -17,-0.1 0.518 99.0 57.3 -75.8 -4.4 -14.2 18.2 1.9 58 58 A N G < S+ 0 0 62 -3,-1.2 -39,-1.1 -39,-0.0 2,-0.4 -0.003 90.9 92.9-114.0 26.3 -16.7 15.4 1.9 59 59 A I E < -B 18 0A 10 -3,-1.2 -41,-0.2 -41,-0.2 -33,-0.0 -0.944 54.7-159.6-123.7 143.9 -14.3 12.7 0.8 60 60 A K E -B 17 0A 91 -43,-1.7 -43,-2.4 -2,-0.4 2,-0.2 -0.953 26.1-109.2-124.7 142.2 -12.1 10.3 2.8 61 61 A P E -B 16 0A 82 0, 0.0 2,-0.3 0, 0.0 -45,-0.2 -0.478 33.3-126.1 -69.8 130.1 -9.0 8.3 1.8 62 62 A V - 0 0 36 -47,-1.1 -47,-0.1 -2,-0.2 -34,-0.0 -0.609 25.9-115.3 -80.2 133.3 -9.5 4.6 1.5 63 63 A Q - 0 0 160 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 -0.201 29.0-122.5 -63.5 157.0 -7.1 2.4 3.5 64 64 A T - 0 0 100 1,-0.0 2,-1.9 2,-0.0 -1,-0.1 -0.687 28.5 -95.9-103.0 157.0 -4.7 0.1 1.7 65 65 A E + 0 0 131 -2,-0.3 2,-0.4 1,-0.2 -1,-0.0 -0.505 47.8 169.3 -72.4 85.2 -4.3 -3.7 2.0 66 66 A A + 0 0 69 -2,-1.9 -1,-0.2 2,-0.0 -2,-0.0 -0.187 16.4 167.4 -91.3 41.7 -1.4 -3.7 4.5 67 67 A W - 0 0 235 -2,-0.4 2,-0.4 1,-0.1 -2,-0.0 -0.140 20.6-153.1 -55.0 151.6 -1.8 -7.5 5.1 68 68 A V - 0 0 128 2,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.987 0.8-148.9-136.5 125.9 1.0 -9.2 6.9 69 69 A R + 0 0 234 -2,-0.4 3,-0.0 2,-0.0 0, 0.0 -0.625 25.7 155.9 -92.2 150.8 2.0 -12.9 6.7 70 70 A D - 0 0 108 -2,-0.2 4,-0.1 1,-0.0 -2,-0.0 -0.895 48.4-128.7-173.1 141.1 3.5 -14.9 9.6 71 71 A P S S+ 0 0 131 0, 0.0 2,-0.8 0, 0.0 -1,-0.0 0.576 89.9 91.1 -69.8 -8.8 3.9 -18.5 10.7 72 72 A N S S- 0 0 118 1,-0.0 0, 0.0 -3,-0.0 0, 0.0 -0.801 84.8-126.9 -94.6 106.3 2.4 -17.5 14.1 73 73 A S - 0 0 99 -2,-0.8 3,-0.1 1,-0.1 -1,-0.0 -0.253 27.2-170.4 -52.3 125.9 -1.3 -17.9 14.0 74 74 A G + 0 0 57 1,-0.2 -1,-0.1 -4,-0.1 2,-0.1 0.877 59.4 32.0 -83.2 -93.7 -2.9 -14.6 15.1 75 75 A P S S- 0 0 135 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.415 70.8-175.8 -69.7 140.6 -6.7 -14.7 15.8 76 76 A S - 0 0 102 -2,-0.1 -2,-0.0 -3,-0.1 0, 0.0 -0.865 37.4 -66.1-133.7 167.3 -8.1 -17.9 17.1 77 77 A S 0 0 123 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.243 360.0 360.0 -54.4 134.5 -11.5 -19.4 18.0 78 78 A G 0 0 127 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.505 360.0 360.0 -77.4 360.0 -13.1 -17.5 20.9