==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 13-DEC-05 2DA5 . COMPND 2 MOLECULE: ZINC FINGERS AND HOMEOBOXES PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,T.KIGAWA,K.SAITO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6378.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 61.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 41.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 2,-0.4 0, 0.0 32,-0.0 0.000 360.0 360.0 360.0-173.5 8.4 -9.1 -11.1 2 2 A S + 0 0 66 50,-0.0 2,-0.3 47,-0.0 47,-0.0 -0.934 360.0 146.9-117.3 136.7 6.9 -5.8 -9.8 3 3 A S + 0 0 92 -2,-0.4 2,-0.1 2,-0.0 50,-0.1 -0.963 6.1 153.8-164.7 146.8 5.0 -3.3 -11.9 4 4 A G + 0 0 30 -2,-0.3 2,-0.4 48,-0.1 -2,-0.0 -0.528 7.8 172.8 178.8 108.7 2.1 -0.8 -11.6 5 5 A S - 0 0 129 -2,-0.1 2,-0.4 0, 0.0 48,-0.1 -0.963 10.9-161.3-126.6 141.8 1.3 2.4 -13.5 6 6 A S - 0 0 87 -2,-0.4 -2,-0.0 1,-0.2 3,-0.0 -0.925 7.9-152.5-122.7 146.6 -1.8 4.6 -13.4 7 7 A G S S+ 0 0 69 -2,-0.4 -1,-0.2 2,-0.0 0, 0.0 0.903 71.6 22.1 -77.6 -94.6 -3.0 7.2 -15.8 8 8 A P S S- 0 0 108 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.116 87.4 -99.4 -69.7 170.9 -5.1 10.0 -14.2 9 9 A T - 0 0 113 2,-0.0 2,-0.2 -3,-0.0 -2,-0.0 -0.849 42.6-177.9 -99.9 122.9 -5.0 11.0 -10.6 10 10 A K - 0 0 139 -2,-0.6 2,-0.4 2,-0.1 0, 0.0 -0.580 23.6-129.8-111.1 175.3 -7.7 9.6 -8.3 11 11 A Y + 0 0 211 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.854 38.3 151.1-132.5 98.1 -8.6 10.1 -4.6 12 12 A K - 0 0 150 -2,-0.4 2,-0.6 0, 0.0 -2,-0.1 -0.989 32.9-144.9-131.9 126.5 -9.2 6.9 -2.6 13 13 A E - 0 0 195 -2,-0.4 -2,-0.0 1,-0.0 0, 0.0 -0.797 23.9-128.0 -93.2 119.4 -8.5 6.5 1.2 14 14 A R - 0 0 86 -2,-0.6 -1,-0.0 1,-0.1 0, 0.0 -0.100 33.1 -92.7 -58.8 161.4 -7.3 3.0 2.1 15 15 A A > - 0 0 32 29,-0.1 4,-2.1 1,-0.1 5,-0.2 -0.307 26.2-118.1 -75.2 160.9 -9.1 1.1 4.9 16 16 A P H > S+ 0 0 102 0, 0.0 4,-1.1 0, 0.0 -1,-0.1 0.753 114.8 47.2 -69.8 -25.2 -8.0 1.2 8.6 17 17 A E H > S+ 0 0 119 2,-0.2 4,-1.1 3,-0.1 5,-0.1 0.900 112.4 46.4 -82.7 -45.7 -7.3 -2.6 8.5 18 18 A Q H >> S+ 0 0 48 2,-0.2 4,-2.0 1,-0.2 3,-0.5 0.938 112.6 50.6 -62.3 -48.8 -5.3 -2.6 5.3 19 19 A L H 3X>S+ 0 0 35 -4,-2.1 4,-2.2 1,-0.2 5,-0.6 0.954 98.8 64.6 -54.1 -56.0 -3.2 0.4 6.2 20 20 A R H 3X5S+ 0 0 145 -4,-1.1 4,-1.1 1,-0.3 -1,-0.2 0.839 110.1 40.2 -34.8 -47.7 -2.2 -1.0 9.6 21 21 A A H X5S+ 0 0 0 -4,-2.0 4,-2.8 2,-0.2 3,-1.2 0.996 110.5 50.8 -66.3 -65.8 1.0 -1.4 5.1 23 23 A E H 3X5S+ 0 0 100 -4,-2.2 4,-1.5 1,-0.3 -1,-0.2 0.840 110.7 53.6 -40.1 -41.7 2.1 1.5 7.3 24 24 A S H 3X - 0 0 128 1,-0.1 4,-1.7 -2,-0.0 5,-0.1 -0.091 36.6 -91.6 -74.8 179.2 9.9 -7.2 -2.5 34 34 A D H > S+ 0 0 73 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.948 124.0 52.7 -57.8 -52.2 7.4 -9.9 -3.6 35 35 A E H >> S+ 0 0 144 1,-0.3 4,-1.3 2,-0.2 3,-0.7 0.957 111.8 43.2 -47.9 -65.2 8.0 -12.1 -0.5 36 36 A E H 3> S+ 0 0 61 1,-0.3 4,-1.5 2,-0.2 -1,-0.3 0.808 115.4 52.9 -52.6 -30.7 7.4 -9.3 2.0 37 37 A L H 3X S+ 0 0 0 -4,-1.7 4,-2.8 1,-0.2 -1,-0.3 0.849 97.9 63.5 -74.3 -35.5 4.4 -8.3 -0.2 38 38 A D H << S+ 0 0 92 -4,-2.8 4,-0.5 -3,-0.7 -1,-0.2 0.861 105.6 46.9 -56.6 -37.2 3.0 -11.8 -0.1 39 39 A R H >X S+ 0 0 203 -4,-1.3 3,-1.7 -5,-0.2 4,-0.7 0.962 112.0 47.0 -70.1 -53.8 2.5 -11.5 3.7 40 40 A L H >X>S+ 0 0 13 -4,-1.5 4,-2.9 1,-0.3 3,-1.1 0.877 99.7 69.5 -55.8 -39.8 0.9 -8.0 3.6 41 41 A R H 3X5S+ 0 0 90 -4,-2.8 4,-1.4 1,-0.3 -1,-0.3 0.791 92.4 61.6 -49.5 -29.2 -1.4 -9.2 0.9 42 42 A S H <45S+ 0 0 92 -3,-1.7 -1,-0.3 -4,-0.5 -2,-0.2 0.919 116.1 27.8 -65.1 -45.1 -3.0 -11.4 3.6 43 43 A E H <<5S+ 0 0 94 -3,-1.1 -2,-0.2 -4,-0.7 -3,-0.1 0.941 127.3 42.7 -81.5 -53.9 -4.0 -8.4 5.7 44 44 A T H <5S- 0 0 1 -4,-2.9 -3,-0.2 -26,-0.2 -2,-0.2 0.772 93.0-149.3 -63.8 -25.8 -4.4 -5.8 2.9 45 45 A K << + 0 0 161 -4,-1.4 2,-0.2 -5,-0.6 -3,-0.2 0.876 53.7 121.9 56.8 39.4 -6.1 -8.4 0.8 46 46 A M - 0 0 5 -5,-0.2 2,-0.2 -6,-0.1 -1,-0.2 -0.687 62.4-102.2-123.4 177.3 -4.8 -6.8 -2.3 47 47 A T > - 0 0 55 -2,-0.2 4,-2.7 -3,-0.1 3,-0.3 -0.639 36.3-103.0-101.2 160.1 -2.6 -7.7 -5.3 48 48 A R H > S+ 0 0 100 1,-0.3 4,-2.8 -2,-0.2 5,-0.2 0.878 125.6 49.3 -44.8 -45.5 1.1 -7.0 -6.0 49 49 A R H > S+ 0 0 164 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.904 111.7 48.8 -62.8 -42.8 -0.1 -4.3 -8.4 50 50 A E H > S+ 0 0 84 -3,-0.3 4,-1.6 2,-0.2 -2,-0.2 0.971 116.9 39.7 -61.6 -56.7 -2.5 -2.8 -5.9 51 51 A I H >X S+ 0 0 0 -4,-2.7 4,-1.6 1,-0.2 3,-0.5 0.955 111.8 56.6 -58.3 -53.7 -0.0 -2.6 -3.0 52 52 A D H 3X S+ 0 0 26 -4,-2.8 4,-2.0 -5,-0.3 -1,-0.2 0.878 105.7 52.9 -45.3 -45.1 2.9 -1.5 -5.2 53 53 A S H 3X S+ 0 0 34 -4,-1.9 4,-1.3 -5,-0.2 -1,-0.3 0.908 103.7 57.7 -59.4 -43.9 0.7 1.4 -6.3 54 54 A W H XX S+ 0 0 14 -4,-1.6 4,-2.3 -3,-0.5 3,-1.7 0.966 106.8 45.4 -50.4 -64.6 0.1 2.4 -2.7 55 55 A F H >X>S+ 0 0 0 -4,-1.6 4,-2.3 1,-0.3 5,-0.7 0.922 111.7 52.0 -45.4 -55.5 3.7 2.8 -1.8 56 56 A S H 3<5S+ 0 0 65 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.746 117.6 40.8 -55.4 -23.0 4.4 4.8 -5.0 57 57 A E H <<5S+ 0 0 99 -3,-1.7 4,-0.3 -4,-1.3 -1,-0.3 0.645 123.7 38.2 -98.1 -20.5 1.5 6.9 -3.9 58 58 A R H XX5S+ 0 0 67 -4,-2.3 4,-2.1 -3,-0.6 3,-1.5 0.908 112.2 50.0 -93.0 -62.3 2.4 7.0 -0.2 59 59 A R T 3<5S+ 0 0 93 -4,-2.3 4,-0.5 1,-0.3 -3,-0.2 0.777 114.1 51.7 -48.6 -27.5 6.2 7.3 -0.1 60 60 A K T 3> S+ 0 0 116 -3,-1.5 4,-2.6 -4,-0.3 3,-0.3 0.872 107.6 49.9 -71.9 -38.1 3.1 11.9 -0.3 62 62 A V H < S+ 0 0 59 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.691 107.6 56.3 -73.3 -18.8 5.5 11.9 2.7 63 63 A N H 4 S+ 0 0 119 -4,-0.5 -1,-0.2 -5,-0.3 -2,-0.2 0.736 114.5 37.3 -83.6 -25.0 8.2 13.3 0.5 64 64 A A H < S+ 0 0 64 -4,-0.9 -2,-0.2 -3,-0.3 -3,-0.1 0.858 101.3 84.1 -92.2 -44.4 6.1 16.3 -0.5 65 65 A E S < S+ 0 0 75 -4,-2.6 3,-0.1 1,-0.2 10,-0.1 0.141 74.1 50.9 -50.1 175.3 4.3 16.9 2.8 66 66 A E S S- 0 0 150 9,-0.3 -1,-0.2 5,-0.2 9,-0.0 0.868 83.1-163.4 57.7 38.0 5.9 19.0 5.5 67 67 A T - 0 0 72 1,-0.1 4,-0.4 4,-0.1 -1,-0.2 -0.216 31.1-109.5 -54.1 139.1 6.6 21.8 2.9 68 68 A K S S+ 0 0 202 -3,-0.1 -1,-0.1 2,-0.1 3,-0.1 0.854 100.2 83.6 -35.2 -51.1 9.2 24.3 4.0 69 69 A K S S- 0 0 138 1,-0.1 2,-1.2 2,-0.0 0, 0.0 0.043 102.0 -92.5 -50.8 166.1 6.4 26.8 4.3 70 70 A S + 0 0 118 1,-0.1 -1,-0.1 2,-0.1 -2,-0.1 -0.708 61.7 152.1 -89.3 93.1 4.3 26.9 7.5 71 71 A G - 0 0 50 -2,-1.2 2,-1.3 -4,-0.4 -5,-0.2 -0.719 26.4-165.2-126.5 83.4 1.4 24.6 6.8 72 72 A P + 0 0 120 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.509 44.4 115.3 -69.8 92.5 -0.0 23.1 10.0 73 73 A S S S- 0 0 103 -2,-1.3 2,-0.5 2,-0.5 -2,-0.1 -0.820 74.9 -34.3-146.0-175.9 -2.2 20.3 8.5 74 74 A S 0 0 127 -2,-0.2 -9,-0.0 -9,-0.0 0, 0.0 -0.251 360.0 360.0 -49.8 100.2 -2.6 16.5 8.4 75 75 A G 0 0 60 -2,-0.5 -2,-0.5 -10,-0.1 -9,-0.3 0.027 360.0 360.0 64.4 360.0 1.1 15.5 8.3