==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 13-DEC-05 2DA6 . COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7688.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 67.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 98 0, 0.0 2,-1.0 0, 0.0 3,-0.7 0.000 360.0 360.0 360.0 159.1 0.1 -16.6 -19.6 2 2 A S T 3 - 0 0 114 1,-0.3 3,-0.0 65,-0.0 65,-0.0 -0.565 360.0 -36.7 -72.2 102.8 2.1 -17.3 -16.4 3 3 A S T 3 S+ 0 0 48 -2,-1.0 66,-0.5 64,-0.1 65,-0.3 0.873 130.4 85.1 47.9 41.9 0.4 -15.2 -13.8 4 4 A G < + 0 0 39 -3,-0.7 2,-0.3 64,-0.1 -1,-0.1 -0.714 44.8 136.9-173.8 118.5 -0.2 -12.6 -16.4 5 5 A S - 0 0 111 -2,-0.2 2,-0.7 -4,-0.0 0, 0.0 -0.979 57.0 -88.1-163.1 151.5 -2.9 -12.0 -19.0 6 6 A S S S+ 0 0 131 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.503 83.4 99.5 -67.1 109.3 -5.0 -9.2 -20.5 7 7 A G - 0 0 54 -2,-0.7 -1,-0.1 2,-0.0 -2,-0.0 0.052 54.3-156.0 169.8 66.4 -8.1 -9.0 -18.3 8 8 A R + 0 0 227 1,-0.0 2,-0.3 2,-0.0 -2,-0.0 -0.231 24.1 170.0 -55.2 139.3 -8.3 -6.4 -15.6 9 9 A N - 0 0 65 54,-0.1 2,-0.4 2,-0.0 -2,-0.0 -0.987 41.4 -86.1-151.8 156.9 -10.7 -7.3 -12.8 10 10 A R + 0 0 216 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.504 53.4 170.8 -68.5 121.6 -11.7 -6.1 -9.3 11 11 A F - 0 0 40 -2,-0.4 2,-0.4 53,-0.1 53,-0.1 -0.984 18.0-163.3-136.1 146.1 -9.4 -7.6 -6.7 12 12 A K - 0 0 161 51,-0.4 -2,-0.0 -2,-0.3 0, 0.0 -0.995 21.1-122.6-132.7 134.2 -8.9 -7.1 -3.0 13 13 A W - 0 0 38 -2,-0.4 51,-0.0 1,-0.1 30,-0.0 -0.137 29.0-127.2 -66.1 166.4 -5.9 -8.1 -0.8 14 14 A G > - 0 0 7 50,-0.1 4,-1.3 1,-0.0 5,-0.3 -0.454 24.4 -98.0-109.0-176.8 -6.4 -10.2 2.3 15 15 A P H > S+ 0 0 98 0, 0.0 4,-0.7 0, 0.0 -2,-0.0 0.849 123.2 31.6 -69.7 -35.8 -5.4 -10.1 6.0 16 16 A A H > S+ 0 0 30 2,-0.1 4,-2.0 3,-0.1 31,-0.1 0.905 116.9 54.2 -87.5 -50.1 -2.4 -12.2 5.5 17 17 A S H >> S+ 0 0 0 1,-0.2 4,-1.8 2,-0.2 3,-0.7 0.955 105.9 52.3 -48.1 -63.8 -1.3 -11.3 2.0 18 18 A Q H >X S+ 0 0 66 -4,-1.3 4,-1.8 1,-0.3 3,-0.7 0.898 107.2 52.8 -38.6 -59.7 -1.2 -7.5 2.7 19 19 A Q H 3X S+ 0 0 126 -4,-0.7 4,-2.4 1,-0.3 -1,-0.3 0.890 106.0 54.7 -45.3 -47.5 1.1 -8.1 5.7 20 20 A I H > - 0 0 77 -2,-0.2 4,-2.5 4,-0.1 5,-0.6 -0.250 44.6 -70.6 -91.7-177.5 12.2 -7.3 -8.9 33 33 A K H >5S+ 0 0 129 1,-0.2 4,-0.9 2,-0.2 5,-0.1 0.796 139.9 43.8 -42.8 -32.2 11.0 -10.5 -10.6 34 34 A E H >5S+ 0 0 161 3,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.945 118.0 40.4 -80.0 -53.9 12.5 -12.2 -7.6 35 35 A E H >5S+ 0 0 81 2,-0.2 4,-0.6 1,-0.2 -2,-0.2 0.979 119.7 44.0 -58.9 -60.3 11.3 -10.0 -4.9 36 36 A R H >X5S+ 0 0 54 -4,-2.5 3,-2.3 1,-0.2 4,-1.2 0.932 112.2 53.9 -50.5 -52.9 7.8 -9.4 -6.3 37 37 A E H >XX S+ 0 0 124 -4,-2.0 4,-1.9 2,-0.2 3,-0.5 0.980 110.0 43.2 -68.2 -58.7 -0.3 -19.5 -0.3 46 46 A A H 3X S+ 0 0 18 -4,-2.7 4,-2.6 1,-0.2 5,-0.3 0.839 110.4 59.7 -56.5 -34.4 -1.2 -17.8 3.0 47 47 A E H 3X S+ 0 0 0 -4,-2.9 4,-2.0 1,-0.2 6,-0.3 0.900 105.7 46.7 -61.7 -42.3 -4.6 -16.9 1.4 48 48 A C H << S+ 0 0 0 -4,-1.4 -1,-0.2 -3,-0.5 -2,-0.2 0.884 113.2 49.9 -67.5 -39.8 -5.4 -20.6 0.9 49 49 A L H >< S+ 0 0 82 -4,-1.9 3,-2.2 2,-0.2 -2,-0.2 0.983 113.9 41.8 -62.7 -60.2 -4.3 -21.5 4.4 50 50 A Q H 3< S+ 0 0 79 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.889 118.1 48.0 -54.8 -42.1 -6.4 -18.8 6.2 51 51 A R T 3< S- 0 0 131 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.382 117.3-117.5 -80.6 4.9 -9.3 -19.5 3.9 52 52 A G S < S+ 0 0 66 -3,-2.2 -3,-0.2 1,-0.2 -4,-0.1 0.076 76.8 125.6 82.2 -27.0 -8.8 -23.2 4.6 53 53 A V - 0 0 72 -6,-0.3 -1,-0.2 1,-0.1 5,-0.1 0.040 68.3 -94.9 -56.6 172.2 -8.0 -23.8 0.9 54 54 A S > - 0 0 60 1,-0.1 3,-1.8 -3,-0.1 -1,-0.1 -0.753 15.5-135.6 -97.6 140.5 -4.8 -25.4 -0.2 55 55 A P T 3 S+ 0 0 63 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.480 105.8 61.7 -69.8 -1.1 -1.7 -23.5 -1.2 56 56 A S T 3 S+ 0 0 83 1,-0.1 3,-0.1 -11,-0.1 -11,-0.1 0.290 103.1 47.8-106.7 6.6 -1.4 -25.8 -4.1 57 57 A K X + 0 0 102 -3,-1.8 3,-2.6 -12,-0.1 4,-0.3 0.022 63.6 129.7-133.8 25.5 -4.7 -24.8 -5.7 58 58 A A G >> + 0 0 15 1,-0.3 3,-2.0 -3,-0.2 4,-0.6 0.812 57.0 84.6 -50.8 -31.9 -4.4 -21.0 -5.5 59 59 A H G >4 S+ 0 0 139 1,-0.3 3,-0.5 2,-0.2 -1,-0.3 0.744 85.0 60.0 -44.0 -24.2 -5.4 -21.1 -9.2 60 60 A G G <4 S+ 0 0 54 -3,-2.6 -1,-0.3 1,-0.2 3,-0.2 0.875 78.3 82.6 -74.5 -38.5 -8.9 -21.2 -7.7 61 61 A L G X4 + 0 0 25 -3,-2.0 3,-2.9 -4,-0.3 2,-0.3 0.789 65.3 163.4 -34.5 -36.3 -8.7 -17.9 -5.9 62 62 A G G X< S+ 0 0 42 -4,-0.6 3,-2.3 -3,-0.5 -1,-0.2 -0.301 72.1 20.8 53.0-107.9 -9.5 -16.4 -9.2 63 63 A S G 3 S+ 0 0 66 -2,-0.3 -51,-0.4 1,-0.3 -1,-0.3 0.713 133.4 48.3 -62.0 -19.6 -10.6 -12.8 -8.4 64 64 A N G < S+ 0 0 52 -3,-2.9 2,-0.3 -4,-0.2 -1,-0.3 0.209 87.9 117.7-104.3 12.7 -8.6 -13.3 -5.1 65 65 A L < - 0 0 44 -3,-2.3 2,-0.3 -4,-0.2 5,-0.1 -0.648 58.2-137.7 -84.7 136.1 -5.6 -14.7 -6.9 66 66 A V + 0 0 0 -2,-0.3 2,-0.3 -26,-0.3 -4,-0.1 -0.701 25.8 173.6 -94.8 144.8 -2.3 -12.8 -6.6 67 67 A T > - 0 0 18 -2,-0.3 4,-1.7 1,-0.1 3,-0.4 -0.980 51.2 -91.4-147.5 157.5 0.0 -12.2 -9.6 68 68 A E H > S+ 0 0 64 -2,-0.3 4,-2.1 -65,-0.3 5,-0.1 0.820 127.8 52.6 -34.1 -43.5 3.2 -10.3 -10.4 69 69 A V H > S+ 0 0 59 -66,-0.5 4,-2.7 2,-0.2 5,-0.3 0.973 102.5 55.0 -60.4 -57.7 0.9 -7.5 -11.5 70 70 A R H > S+ 0 0 41 -3,-0.4 4,-2.4 1,-0.3 -2,-0.2 0.893 113.6 42.6 -41.8 -52.0 -1.1 -7.3 -8.3 71 71 A V H X S+ 0 0 0 -4,-1.7 4,-2.5 1,-0.2 -1,-0.3 0.868 110.9 56.4 -65.1 -37.5 2.1 -6.8 -6.3 72 72 A Y H X S+ 0 0 130 -4,-2.1 4,-1.3 -5,-0.4 -2,-0.2 0.871 110.6 44.7 -62.4 -37.8 3.4 -4.4 -9.0 73 73 A N H X S+ 0 0 66 -4,-2.7 4,-2.4 2,-0.2 5,-0.2 0.941 112.2 50.1 -72.0 -49.6 0.3 -2.2 -8.5 74 74 A W H X S+ 0 0 14 -4,-2.4 4,-2.3 -5,-0.3 -2,-0.2 0.930 113.5 45.8 -54.5 -49.7 0.3 -2.4 -4.7 75 75 A F H X S+ 0 0 7 -4,-2.5 4,-1.0 1,-0.2 -1,-0.2 0.853 110.7 55.0 -63.0 -35.3 4.0 -1.4 -4.5 76 76 A A H X S+ 0 0 34 -4,-1.3 4,-1.4 -5,-0.3 -1,-0.2 0.899 110.9 43.6 -65.1 -41.9 3.3 1.4 -7.1 77 77 A N H X S+ 0 0 97 -4,-2.4 4,-2.5 1,-0.2 5,-0.3 0.863 108.8 57.5 -71.7 -36.8 0.5 2.9 -5.0 78 78 A R H X S+ 0 0 60 -4,-2.3 4,-0.9 -5,-0.2 -1,-0.2 0.754 113.0 41.7 -65.1 -24.0 2.6 2.6 -1.8 79 79 A R H X S+ 0 0 130 -4,-1.0 4,-1.0 -3,-0.2 -1,-0.2 0.718 113.2 52.2 -93.7 -26.4 5.3 4.7 -3.5 80 80 A K H X S+ 0 0 143 -4,-1.4 4,-0.5 2,-0.2 -2,-0.2 0.839 111.9 45.9 -77.8 -35.0 2.8 7.2 -5.1 81 81 A E H >X S+ 0 0 91 -4,-2.5 4,-1.1 2,-0.2 3,-0.9 0.945 110.0 51.5 -72.7 -50.5 1.1 7.9 -1.8 82 82 A E H 3< S+ 0 0 94 -4,-0.9 4,-0.2 -5,-0.3 -1,-0.2 0.847 115.1 44.5 -55.2 -35.5 4.2 8.3 0.3 83 83 A A H >X S+ 0 0 46 -4,-1.0 4,-2.5 1,-0.1 3,-0.6 0.633 98.5 77.8 -83.6 -15.5 5.5 10.8 -2.3 84 84 A F H XX S+ 0 0 108 -3,-0.9 4,-2.9 -4,-0.5 3,-0.7 0.984 85.8 55.1 -56.2 -65.0 2.1 12.5 -2.5 85 85 A R H 3< S+ 0 0 213 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.1 0.740 118.0 40.7 -41.7 -24.5 2.4 14.5 0.7 86 86 A Q H X> S+ 0 0 131 -3,-0.6 4,-0.9 -4,-0.2 3,-0.7 0.772 111.1 54.4 -95.2 -33.4 5.6 15.7 -1.0 87 87 A K H