==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 14-DEC-05 2DAG . COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5556.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 51.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 35.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -86.8 -6.1 27.7 1.2 2 2 A S - 0 0 109 0, 0.0 2,-1.3 0, 0.0 3,-0.1 -0.986 360.0-108.4-145.8 131.1 -4.7 24.2 0.6 3 3 A S - 0 0 121 -2,-0.3 3,-0.3 1,-0.2 0, 0.0 -0.397 39.6-176.6 -59.7 92.8 -4.3 21.3 3.0 4 4 A G + 0 0 50 -2,-1.3 2,-3.6 1,-0.2 -1,-0.2 0.987 25.6 146.0 -54.8 -76.2 -0.6 21.3 3.2 5 5 A S - 0 0 86 -3,-0.1 -1,-0.2 4,-0.1 4,-0.1 -0.313 41.1-161.0 70.0 -61.9 0.1 18.3 5.4 6 6 A S + 0 0 101 -2,-3.6 -2,-0.0 -3,-0.3 -1,-0.0 0.327 51.1 69.9 64.7 157.2 3.3 17.6 3.6 7 7 A G S S- 0 0 72 2,-0.1 28,-0.0 28,-0.0 0, 0.0 0.904 108.1 -17.4 64.3 102.8 5.1 14.3 3.6 8 8 A L S S- 0 0 64 1,-0.1 2,-0.5 22,-0.1 19,-0.0 0.263 82.1 -97.9 55.7 167.9 3.2 11.7 1.6 9 9 A D > - 0 0 63 1,-0.1 4,-1.3 -4,-0.1 3,-0.2 -0.953 31.4-179.7-127.6 110.9 -0.5 12.1 0.8 10 10 A E H > S+ 0 0 122 -2,-0.5 4,-4.1 1,-0.2 5,-0.3 0.860 79.6 71.9 -74.0 -37.8 -3.1 10.4 3.0 11 11 A S H > S+ 0 0 83 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.853 103.5 43.5 -44.2 -41.6 -5.9 11.7 0.9 12 12 A V H > S+ 0 0 16 -3,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.936 114.0 49.1 -70.6 -48.7 -4.8 9.2 -1.7 13 13 A I H X S+ 0 0 8 -4,-1.3 4,-3.7 1,-0.2 5,-0.3 0.947 108.0 54.8 -54.7 -53.3 -4.3 6.4 0.8 14 14 A I H X S+ 0 0 62 -4,-4.1 4,-2.6 2,-0.2 5,-0.2 0.929 108.1 49.5 -44.4 -58.8 -7.7 7.0 2.3 15 15 A Q H >X S+ 0 0 113 -4,-1.8 4,-2.0 -5,-0.3 3,-0.9 0.943 112.9 45.0 -45.3 -65.0 -9.3 6.6 -1.1 16 16 A L H >X S+ 0 0 0 -4,-2.3 4,-0.9 1,-0.3 3,-0.6 0.906 113.7 50.8 -46.1 -50.0 -7.5 3.4 -1.8 17 17 A V H 3< S+ 0 0 43 -4,-3.7 3,-0.5 1,-0.3 4,-0.5 0.833 109.2 52.2 -57.8 -33.3 -8.4 2.3 1.7 18 18 A E H << S+ 0 0 157 -4,-2.6 -1,-0.3 -3,-0.9 -2,-0.3 0.787 101.4 60.0 -72.9 -29.0 -11.9 3.2 0.9 19 19 A M H << S- 0 0 112 -4,-2.0 -1,-0.2 -3,-0.6 -2,-0.2 0.682 133.6 -87.3 -71.4 -18.6 -11.8 1.1 -2.2 20 20 A G S < S+ 0 0 62 -4,-0.9 -3,-0.2 -3,-0.5 -2,-0.2 0.769 83.3 130.9 110.5 52.7 -11.1 -1.9 -0.0 21 21 A F - 0 0 44 -4,-0.5 2,-0.4 -5,-0.4 -1,-0.2 -0.921 62.0 -94.6-133.2 158.0 -7.3 -2.0 0.4 22 22 A P > - 0 0 44 0, 0.0 4,-3.2 0, 0.0 5,-0.2 -0.584 29.0-137.4 -75.0 124.8 -4.9 -2.3 3.3 23 23 A M H > S+ 0 0 86 -2,-0.4 4,-3.6 2,-0.2 5,-0.4 0.921 103.9 51.9 -42.3 -62.8 -3.7 1.0 4.6 24 24 A D H > S+ 0 0 80 1,-0.3 4,-1.6 2,-0.3 -1,-0.2 0.910 112.8 45.2 -40.2 -59.9 -0.1 -0.2 4.9 25 25 A A H > S+ 0 0 0 30,-0.3 4,-2.4 1,-0.3 3,-0.4 0.899 113.2 51.0 -52.2 -44.6 -0.2 -1.4 1.4 26 26 A C H X S+ 0 0 0 -4,-3.2 4,-1.6 1,-0.3 -1,-0.3 0.879 111.1 48.1 -60.6 -38.8 -1.9 1.8 0.4 27 27 A R H X S+ 0 0 139 -4,-3.6 4,-1.5 -5,-0.2 -1,-0.3 0.682 108.3 57.4 -74.3 -18.9 0.9 3.6 2.2 28 28 A K H X S+ 0 0 6 -4,-1.6 4,-3.3 -3,-0.4 5,-0.3 0.933 105.1 48.1 -75.7 -49.8 3.4 1.4 0.4 29 29 A A H X S+ 0 0 0 -4,-2.4 4,-3.6 2,-0.2 5,-0.5 0.980 114.9 43.4 -52.9 -67.9 2.2 2.4 -3.1 30 30 A V H X>S+ 0 0 1 -4,-1.6 5,-3.2 2,-0.2 4,-1.9 0.915 117.8 48.4 -42.8 -56.6 2.3 6.1 -2.4 31 31 A Y H ><5S+ 0 0 132 -4,-1.5 3,-1.1 3,-0.2 -2,-0.2 0.963 116.4 39.5 -48.3 -70.9 5.6 5.7 -0.7 32 32 A Y H 3<5S+ 0 0 88 -4,-3.3 -2,-0.2 1,-0.3 -1,-0.2 0.922 119.3 46.7 -45.0 -57.8 7.3 3.6 -3.3 33 33 A T H 3<5S- 0 0 41 -4,-3.6 -1,-0.3 -5,-0.3 -2,-0.2 0.740 112.9-127.2 -58.3 -23.4 5.8 5.7 -6.1 34 34 A G T <<5 - 0 0 47 -4,-1.9 -3,-0.2 -3,-1.1 -4,-0.1 0.866 59.5 -60.3 76.4 39.3 6.9 8.7 -4.1 35 35 A N S - 0 0 38 3,-0.1 4,-1.7 2,-0.1 -1,-0.7 -0.082 54.3 -87.8 91.0 166.6 -1.2 10.8 -7.9 38 38 A A H > S+ 0 0 26 2,-0.2 4,-4.6 3,-0.2 5,-0.3 0.944 122.5 56.3 -76.2 -52.2 -3.7 8.1 -7.1 39 39 A E H > S+ 0 0 170 1,-0.2 4,-2.7 2,-0.2 -1,-0.1 0.908 112.7 42.7 -43.9 -54.4 -3.8 6.6 -10.6 40 40 A A H > S+ 0 0 42 -4,-0.5 4,-2.0 2,-0.2 -1,-0.2 0.959 116.5 47.5 -58.1 -54.8 -0.0 6.1 -10.4 41 41 A A H X S+ 0 0 0 -4,-1.7 4,-1.9 1,-0.2 -2,-0.2 0.944 111.1 51.9 -50.7 -55.6 -0.2 4.8 -6.8 42 42 A M H >X S+ 0 0 51 -4,-4.6 4,-3.8 1,-0.2 3,-0.6 0.919 104.3 56.8 -46.6 -55.0 -3.1 2.5 -7.7 43 43 A N H 3X S+ 0 0 107 -4,-2.7 4,-2.4 1,-0.3 5,-0.3 0.918 104.5 51.3 -42.3 -58.6 -1.1 1.1 -10.6 44 44 A W H 3X S+ 0 0 42 -4,-2.0 4,-3.2 1,-0.3 -1,-0.3 0.876 115.0 44.9 -47.2 -41.6 1.7 0.1 -8.2 45 45 A V H < S+ 0 0 78 -4,-2.4 3,-0.5 -5,-0.3 -2,-0.2 0.884 118.9 42.1 -88.1 -47.3 0.7 -4.6 -9.9 48 48 A H H >< S+ 0 0 56 -4,-3.2 3,-4.5 -5,-0.3 5,-0.2 0.966 104.7 63.4 -63.6 -55.1 1.6 -5.5 -6.4 49 49 A M T 3< S+ 0 0 87 -4,-3.7 -1,-0.2 1,-0.3 5,-0.2 0.750 84.7 80.2 -40.4 -28.3 -1.8 -6.9 -5.5 50 50 A D T < S+ 0 0 132 -3,-0.5 -1,-0.3 -5,-0.3 -2,-0.2 0.818 93.3 56.2 -50.4 -32.6 -1.0 -9.4 -8.2 51 51 A D S X S- 0 0 88 -3,-4.5 3,-0.8 -4,-0.2 4,-0.2 -0.730 85.8-130.1-103.4 153.3 1.0 -11.1 -5.5 52 52 A P T 3 S+ 0 0 114 0, 0.0 4,-0.5 0, 0.0 3,-0.3 0.569 104.8 72.7 -75.1 -9.4 -0.3 -12.3 -2.1 53 53 A D T 3 S+ 0 0 74 -5,-0.2 -4,-0.1 1,-0.2 -3,-0.1 -0.000 75.5 88.0 -92.9 27.4 2.7 -10.4 -0.6 54 54 A F S < S+ 0 0 18 -3,-0.8 -1,-0.2 -5,-0.2 -5,-0.1 0.898 85.2 44.9 -89.0 -50.5 0.9 -7.2 -1.3 55 55 A A S S+ 0 0 51 -3,-0.3 -30,-0.3 -4,-0.2 -2,-0.1 0.860 93.3 105.9 -61.5 -36.7 -1.2 -6.7 1.8 56 56 A N S S- 0 0 69 -4,-0.5 3,-0.1 -32,-0.1 -3,-0.0 0.065 80.3-101.5 -40.6 156.0 1.8 -7.7 3.8 57 57 A P - 0 0 72 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.050 50.7 -67.2 -75.0-178.3 3.5 -4.8 5.7 58 58 A L S S- 0 0 66 1,-0.2 -33,-0.0 0, 0.0 -34,-0.0 -0.209 79.4 -57.5 -67.4 162.3 6.7 -3.0 4.6 59 59 A I - 0 0 141 1,-0.1 -1,-0.2 -3,-0.1 0, 0.0 -0.046 62.5-133.0 -40.6 137.8 10.0 -4.8 4.6 60 60 A L - 0 0 100 -3,-0.1 2,-2.3 1,-0.0 3,-0.4 -0.676 22.4-101.1 -99.5 154.8 10.7 -6.2 8.1 61 61 A P S S- 0 0 128 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.488 96.2 -39.2 -75.0 76.4 14.0 -5.9 10.0 62 62 A G S S- 0 0 59 -2,-2.3 -3,-0.0 1,-0.1 0, 0.0 0.994 81.1-109.1 65.9 80.3 15.2 -9.4 9.2 63 63 A S + 0 0 89 -3,-0.4 -1,-0.1 1,-0.2 -4,-0.0 -0.085 54.4 156.6 -40.0 124.5 12.2 -11.6 9.5 64 64 A S + 0 0 120 1,-0.1 -1,-0.2 -3,-0.0 -2,-0.1 0.692 68.7 23.5-118.7 -57.3 12.6 -13.6 12.6 65 65 A G S S- 0 0 69 2,-0.0 2,-0.1 0, 0.0 -1,-0.1 -0.737 77.4-175.3-119.3 81.0 9.1 -14.7 13.8 66 66 A P - 0 0 102 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.392 15.8-155.3 -75.0 152.7 6.8 -14.6 10.8 67 67 A G + 0 0 86 -2,-0.1 2,-0.3 2,-0.0 -2,-0.0 -0.584 48.6 111.8-129.8 69.5 3.1 -15.3 11.1 68 68 A S + 0 0 117 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.985 23.1 161.0-141.5 149.6 1.9 -16.6 7.8 69 69 A S - 0 0 125 -2,-0.3 -1,-0.1 2,-0.0 -2,-0.0 0.574 24.7-157.5-129.2 -61.0 0.6 -19.9 6.4 70 70 A G - 0 0 60 1,-0.1 2,-0.4 -18,-0.0 3,-0.1 0.934 20.1-125.8 70.4 95.3 -1.4 -19.4 3.2 71 71 A P - 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.577 9.0-148.2 -74.9 126.5 -3.8 -22.3 2.6 72 72 A S S S+ 0 0 135 -2,-0.4 2,-0.2 2,-0.1 -2,-0.0 0.968 83.7 33.8 -55.5 -59.7 -3.3 -23.8 -0.8 73 73 A S 0 0 109 1,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.626 360.0 360.0 -98.3 158.3 -6.9 -24.8 -1.2 74 74 A G 0 0 129 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.1 0.675 360.0 360.0-119.1 360.0 -9.9 -22.8 0.1