==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-05 2DAH . COMPND 2 MOLECULE: UBIQUILIN-3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 54 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4494.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.5 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 141.9 13.8 10.2 6.8 2 2 A S - 0 0 114 1,-0.3 3,-0.1 3,-0.1 0, 0.0 -0.867 360.0 -32.6-126.5 96.3 17.5 10.5 6.0 3 3 A S S S+ 0 0 131 -2,-0.5 -1,-0.3 1,-0.2 2,-0.2 0.942 106.1 89.2 57.5 96.1 18.3 12.7 3.0 4 4 A G S S- 0 0 66 -3,-0.1 -1,-0.2 2,-0.0 3,-0.0 -0.584 80.0 -73.2 153.6 144.3 15.5 12.2 0.5 5 5 A S - 0 0 117 -2,-0.2 2,-0.7 1,-0.1 -3,-0.1 0.040 48.4-114.2 -48.5 163.3 12.1 13.6 -0.4 6 6 A S - 0 0 125 -5,-0.1 -1,-0.1 4,-0.0 -2,-0.0 -0.869 33.6-161.5-110.7 98.2 9.2 12.8 1.8 7 7 A G - 0 0 39 -2,-0.7 3,-0.3 1,-0.1 4,-0.1 -0.179 19.6-124.8 -71.5 168.2 6.7 10.6 0.0 8 8 A H S S+ 0 0 169 1,-0.2 2,-0.6 2,-0.1 4,-0.2 0.978 99.5 9.3 -76.4 -76.6 3.1 10.1 1.1 9 9 A F S > S+ 0 0 26 1,-0.2 4,-0.6 2,-0.1 -1,-0.2 -0.537 90.7 125.0-106.6 63.7 2.6 6.4 1.5 10 10 A Q H >> S+ 0 0 120 -2,-0.6 4,-3.6 -3,-0.3 3,-0.6 0.964 73.8 38.6 -81.4 -74.4 6.2 5.3 1.2 11 11 A V H 3> S+ 0 0 89 1,-0.3 4,-1.8 2,-0.2 5,-0.2 0.901 119.5 50.5 -41.5 -54.3 7.0 3.2 4.3 12 12 A Q H 3> S+ 0 0 55 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.880 113.3 46.1 -52.7 -42.1 3.5 1.8 4.1 13 13 A L H X S+ 0 0 104 -4,-1.8 4,-2.5 1,-0.2 3,-0.7 0.942 114.5 51.0 -48.2 -58.9 6.1 -3.3 3.3 16 16 A L H 3X>S+ 0 0 0 -4,-1.7 5,-2.6 1,-0.3 4,-1.3 0.912 105.8 56.7 -45.0 -52.7 3.4 -3.9 0.7 17 17 A R H ><5S+ 0 0 134 -4,-3.9 3,-0.7 1,-0.3 -1,-0.3 0.883 108.7 47.0 -46.6 -46.0 6.1 -4.0 -2.0 18 18 A S H <<5S+ 0 0 113 -4,-1.9 -1,-0.3 -3,-0.7 -2,-0.2 0.922 104.5 59.2 -63.2 -46.2 7.7 -6.8 -0.0 19 19 A M H 3<5S- 0 0 121 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.2 0.708 129.7 -99.0 -55.6 -20.3 4.5 -8.6 0.4 20 20 A G T <<5S+ 0 0 42 -4,-1.3 2,-1.7 -3,-0.7 -3,-0.2 0.576 76.3 146.1 107.8 18.3 4.4 -8.7 -3.3 21 21 A F < + 0 0 38 -5,-2.6 2,-1.7 -6,-0.2 -1,-0.1 -0.549 11.8 165.7 -87.5 71.6 2.1 -5.7 -3.8 22 22 A L + 0 0 114 -2,-1.7 -1,-0.1 1,-0.2 3,-0.1 -0.305 51.7 91.9 -83.2 52.2 3.6 -4.4 -7.0 23 23 A N >> + 0 0 78 -2,-1.7 4,-3.1 1,-0.1 3,-1.3 -0.316 40.0 161.3-141.4 51.2 0.6 -2.2 -7.6 24 24 A R H 3> S+ 0 0 138 1,-0.3 4,-4.6 2,-0.2 5,-0.2 0.854 77.2 61.3 -38.9 -46.9 1.5 1.1 -5.9 25 25 A E H 3> S+ 0 0 162 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.913 114.4 32.9 -47.6 -51.6 -1.3 2.6 -8.0 26 26 A A H <> S+ 0 0 37 -3,-1.3 4,-3.1 2,-0.2 5,-0.3 0.949 117.3 54.6 -71.0 -51.4 -3.8 0.4 -6.3 27 27 A N H X S+ 0 0 0 -4,-3.1 4,-4.1 2,-0.2 -2,-0.2 0.906 108.9 51.2 -47.2 -49.1 -2.0 0.3 -3.0 28 28 A L H X S+ 0 0 68 -4,-4.6 4,-3.5 -5,-0.3 5,-0.3 0.979 109.8 46.1 -51.9 -69.8 -2.1 4.1 -3.0 29 29 A Q H X S+ 0 0 136 -4,-1.8 4,-2.8 1,-0.3 -1,-0.2 0.878 117.1 46.3 -39.0 -52.9 -5.8 4.4 -3.7 30 30 A A H X S+ 0 0 17 -4,-3.1 4,-2.8 1,-0.2 5,-0.3 0.944 111.9 50.0 -57.1 -51.5 -6.4 1.8 -1.0 31 31 A L H X>S+ 0 0 0 -4,-4.1 4,-3.8 -5,-0.3 5,-3.1 0.871 110.8 51.7 -54.7 -39.1 -4.0 3.5 1.4 32 32 A I H <5S+ 0 0 81 -4,-3.5 -1,-0.2 3,-0.2 -2,-0.2 0.934 108.5 50.3 -63.3 -48.0 -5.9 6.7 0.6 33 33 A A H <5S+ 0 0 87 -4,-2.8 -2,-0.2 -5,-0.3 -1,-0.2 0.961 119.6 35.8 -53.8 -58.0 -9.2 5.1 1.4 34 34 A T H <5S- 0 0 44 -4,-2.8 -2,-0.2 3,-0.2 -1,-0.2 0.920 116.4-115.1 -62.1 -46.4 -7.9 3.8 4.7 35 35 A G T <5S- 0 0 60 -4,-3.8 -3,-0.2 -5,-0.3 -4,-0.1 0.620 75.1 -41.2 114.5 26.9 -5.8 6.8 5.3 36 36 A G S - 0 0 87 -6,-0.3 4,-0.8 1,-0.1 -1,-0.4 -0.205 30.1-172.3 -48.8 129.4 -3.3 2.2 7.2 38 38 A V H > S+ 0 0 26 2,-0.2 4,-3.5 3,-0.1 5,-0.2 0.912 79.8 53.4 -90.3 -58.2 -1.4 -0.7 5.7 39 39 A D H > S+ 0 0 125 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.900 114.8 44.7 -42.0 -53.2 -3.0 -3.6 7.5 40 40 A A H > S+ 0 0 26 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.963 111.2 52.5 -56.9 -56.4 -6.4 -2.4 6.6 41 41 A A H >X S+ 0 0 0 -4,-0.8 4,-4.0 1,-0.3 3,-1.4 0.916 106.4 54.4 -44.3 -54.6 -5.3 -1.7 3.0 42 42 A V H 3X S+ 0 0 19 -4,-3.5 4,-3.5 1,-0.3 5,-0.3 0.919 104.4 53.5 -45.5 -54.1 -4.1 -5.3 2.8 43 43 A E H 3X S+ 0 0 122 -4,-2.1 4,-1.1 -5,-0.2 -1,-0.3 0.801 117.8 39.3 -52.1 -30.9 -7.5 -6.5 3.9 44 44 A K H