==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 14-DEC-05 2DAO . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR ETV6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.N.NIRAULA,A.SASAGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE, . 118 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8557.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 11.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 21 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 23.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 142 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 52.9 -23.9 -0.7 2.8 2 2 A S + 0 0 119 1,-0.1 3,-0.0 3,-0.0 0, 0.0 -0.957 360.0 157.2-120.0 118.0 -23.8 2.9 4.0 3 3 A S + 0 0 126 -2,-0.5 -1,-0.1 1,-0.1 0, 0.0 -0.225 43.7 104.4-130.5 43.2 -20.5 4.4 5.2 4 4 A G + 0 0 63 2,-0.0 2,-0.5 1,-0.0 -1,-0.1 0.858 56.9 83.6 -90.7 -41.4 -21.2 8.1 4.7 5 5 A S + 0 0 132 -3,-0.0 2,-0.2 2,-0.0 -1,-0.0 -0.524 61.5 152.3 -69.0 114.5 -21.8 9.1 8.3 6 6 A S + 0 0 67 -2,-0.5 -2,-0.0 1,-0.1 -3,-0.0 -0.804 26.5 169.9-135.6 176.5 -18.4 9.8 9.9 7 7 A G + 0 0 49 -2,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.338 70.0 68.1-151.9 -59.5 -16.7 11.8 12.7 8 8 A C - 0 0 38 1,-0.1 3,-0.1 2,-0.1 5,-0.1 0.836 67.1-174.0 -41.8 -39.7 -13.2 10.9 13.5 9 9 A R + 0 0 129 1,-0.2 2,-0.3 2,-0.1 -1,-0.1 0.859 31.6 143.9 41.1 44.4 -12.3 12.3 10.1 10 10 A L > - 0 0 11 1,-0.2 4,-1.1 99,-0.1 -1,-0.2 -0.827 47.8-152.7-113.8 152.6 -8.7 11.1 10.8 11 11 A L H > S+ 0 0 4 -2,-0.3 4,-1.2 2,-0.2 3,-0.2 0.956 92.5 54.0 -84.1 -68.8 -6.2 9.6 8.4 12 12 A W H > S+ 0 0 8 1,-0.3 4,-0.5 2,-0.2 3,-0.4 0.810 117.9 42.7 -34.2 -41.2 -3.9 7.4 10.5 13 13 A D H >> S+ 0 0 21 1,-0.2 4,-1.1 2,-0.2 3,-0.6 0.917 96.0 73.5 -75.0 -45.8 -7.2 5.7 11.6 14 14 A Y H 3X S+ 0 0 15 -4,-1.1 4,-0.9 -3,-0.2 -1,-0.2 0.745 89.6 69.1 -40.0 -25.5 -8.7 5.6 8.1 15 15 A V H >X S+ 0 0 12 -4,-1.2 3,-2.3 -3,-0.4 4,-1.9 0.992 96.0 45.6 -59.2 -67.2 -6.2 2.8 7.7 16 16 A Y H S+ 0 0 75 -2,-0.8 3,-2.3 1,-0.3 4,-0.3 0.816 84.5 77.6 -59.1 -30.9 -10.7 -7.4 2.8 23 23 A R G 3 S+ 0 0 221 1,-0.3 -1,-0.3 2,-0.1 3,-0.2 0.685 92.2 55.3 -53.3 -16.5 -12.5 -5.8 -0.1 24 24 A Y G <> S+ 0 0 89 -3,-2.1 4,-2.1 -6,-0.4 -1,-0.3 -0.065 76.2 106.5-107.9 30.9 -9.9 -3.0 0.3 25 25 A E T <4 + 0 0 81 -3,-2.3 16,-0.3 2,-0.2 -1,-0.1 0.967 69.8 59.2 -72.4 -55.7 -6.9 -5.4 -0.0 26 26 A N T 4 S+ 0 0 125 -4,-0.3 -1,-0.2 1,-0.3 3,-0.1 0.827 116.2 38.4 -41.9 -37.8 -5.8 -4.4 -3.5 27 27 A F T 4 S- 0 0 72 1,-0.3 15,-1.6 14,-0.2 14,-1.0 0.901 138.3 -7.1 -81.5 -45.6 -5.4 -0.9 -2.1 28 28 A I E < +A 40 0A 4 -4,-2.1 -1,-0.3 12,-0.2 2,-0.3 -0.970 66.1 171.6-156.0 137.8 -4.0 -2.0 1.3 29 29 A R E -A 39 0A 132 10,-1.1 10,-1.4 -2,-0.3 2,-0.7 -0.864 43.2 -82.3-139.5 172.6 -3.5 -5.2 3.2 30 30 A W E -A 38 0A 52 -2,-0.3 3,-0.3 8,-0.2 8,-0.3 -0.705 34.9-174.2 -83.5 114.5 -1.9 -6.6 6.3 31 31 A E E S+ 0 0 60 6,-1.6 2,-0.3 -2,-0.7 7,-0.2 0.982 80.1 1.8 -70.4 -59.8 1.9 -7.2 5.7 32 32 A D E > > -A 37 0A 77 5,-1.7 3,-2.4 1,-0.1 5,-1.8 -0.717 60.4-174.9-134.4 83.8 2.7 -8.9 9.1 33 33 A K G > 5S+ 0 0 132 -2,-0.3 3,-1.5 -3,-0.3 -1,-0.1 0.780 82.0 75.6 -46.7 -28.5 -0.3 -9.3 11.3 34 34 A E G 3 5S+ 0 0 172 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.0 0.887 113.8 19.4 -52.1 -42.6 2.2 -10.6 13.8 35 35 A S G < 5S- 0 0 46 -3,-2.4 54,-0.3 2,-0.1 -1,-0.3 -0.064 112.2-108.6-119.1 30.3 3.3 -7.0 14.5 36 36 A K T < 5 + 0 0 73 -3,-1.5 53,-1.6 1,-0.2 2,-0.5 0.870 61.8 167.5 43.5 45.1 0.2 -5.3 13.1 37 37 A I E < +AB 32 88A 19 -5,-1.8 -5,-1.7 51,-0.2 -6,-1.6 -0.793 10.1 179.6 -94.4 126.3 2.3 -4.2 10.1 38 38 A F E -AB 30 87A 0 49,-2.4 49,-2.3 -2,-0.5 2,-0.3 -0.801 10.9-163.0-122.0 164.2 0.5 -2.7 7.1 39 39 A R E -AB 29 86A 86 -10,-1.4 -10,-1.1 -2,-0.3 2,-1.0 -0.984 26.7-117.2-150.8 136.3 1.5 -1.3 3.7 40 40 A I E -A 28 0A 13 45,-1.3 -12,-0.2 -2,-0.3 45,-0.1 -0.618 22.8-166.8 -76.5 103.1 -0.2 0.8 1.1 41 41 A V S S+ 0 0 58 -14,-1.0 -13,-0.2 -2,-1.0 -1,-0.2 0.929 81.4 12.7 -54.1 -50.0 -0.4 -1.4 -2.0 42 42 A D > - 0 0 85 -15,-1.6 4,-3.0 1,-0.1 -1,-0.3 -0.906 60.4-179.4-137.0 107.3 -1.3 1.5 -4.2 43 43 A P H > S+ 0 0 40 0, 0.0 4,-2.5 0, 0.0 5,-0.3 0.894 84.3 60.2 -69.8 -42.0 -0.9 5.1 -3.0 44 44 A N H > S+ 0 0 115 1,-0.2 4,-0.6 2,-0.2 -2,-0.0 0.877 119.8 28.6 -54.4 -39.9 -2.2 6.7 -6.2 45 45 A G H > S+ 0 0 18 2,-0.2 4,-1.3 3,-0.1 -1,-0.2 0.894 116.8 57.0 -88.3 -46.3 -5.5 4.9 -5.7 46 46 A L H >X S+ 0 0 2 -4,-3.0 4,-1.3 1,-0.2 3,-0.5 0.926 105.8 52.3 -50.2 -51.6 -5.6 4.5 -1.9 47 47 A A H 3X S+ 0 0 2 -4,-2.5 4,-3.0 1,-0.2 3,-0.5 0.908 98.6 65.7 -52.1 -46.8 -5.4 8.3 -1.5 48 48 A R H 3X S+ 0 0 156 -4,-0.6 4,-2.5 -5,-0.3 -1,-0.2 0.897 101.3 48.6 -41.7 -53.4 -8.3 8.8 -3.9 49 49 A L H S+ 0 0 5 -4,-3.0 5,-2.4 8,-0.2 -2,-0.2 0.677 112.7 59.5 -83.8 -18.3 -9.7 12.5 -0.7 52 52 A N H ><5S+ 0 0 123 -4,-2.5 3,-1.8 -5,-0.4 -2,-0.2 0.978 110.4 36.6 -72.8 -59.7 -13.0 11.3 -2.1 53 53 A H H 3<5S+ 0 0 90 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.696 112.5 63.4 -66.5 -18.3 -15.0 10.8 1.1 54 54 A K T 3<5S- 0 0 23 -4,-0.5 -1,-0.3 -5,-0.3 -2,-0.2 0.299 108.1-126.5 -88.4 9.2 -13.1 13.9 2.4 55 55 A N T < 5 + 0 0 138 -3,-1.8 -3,-0.2 1,-0.1 -2,-0.1 0.800 64.1 143.6 49.5 30.5 -14.8 16.0 -0.4 56 56 A R < - 0 0 107 -5,-2.4 2,-0.4 -6,-0.1 -1,-0.1 -0.241 47.3-121.4 -90.0-178.3 -11.2 17.0 -1.3 57 57 A T S S- 0 0 115 1,-0.1 3,-0.2 -3,-0.1 -5,-0.0 -0.992 79.5 -10.4-131.9 135.9 -9.7 17.7 -4.7 58 58 A N S S- 0 0 143 -2,-0.4 2,-0.5 1,-0.2 -1,-0.1 0.884 79.4-159.9 45.7 45.8 -6.7 16.1 -6.4 59 59 A M - 0 0 28 -11,-0.1 2,-0.2 -3,-0.1 -1,-0.2 -0.410 9.2-163.7 -60.1 110.2 -5.9 14.4 -3.1 60 60 A T > - 0 0 57 -2,-0.5 4,-0.6 -3,-0.2 -16,-0.1 -0.661 29.1-123.0 -98.5 154.7 -2.2 13.4 -3.4 61 61 A Y H > S+ 0 0 48 -2,-0.2 4,-2.8 1,-0.2 3,-0.4 0.836 108.3 65.5 -62.3 -33.2 -0.3 11.0 -1.2 62 62 A E H > S+ 0 0 149 1,-0.3 4,-0.9 2,-0.2 -1,-0.2 0.966 105.4 39.7 -53.1 -60.4 2.2 13.7 -0.3 63 63 A K H 4 S+ 0 0 94 1,-0.2 -1,-0.3 2,-0.2 -2,-0.2 0.613 116.3 58.9 -66.3 -10.5 -0.4 15.8 1.5 64 64 A M H >< S+ 0 0 5 -4,-0.6 3,-2.6 -3,-0.4 4,-0.4 0.964 98.7 49.3 -81.6 -63.8 -1.7 12.5 2.9 65 65 A S H 3X S+ 0 0 32 -4,-2.8 4,-2.0 1,-0.3 5,-0.2 0.712 87.2 92.9 -49.6 -19.5 1.4 11.1 4.7 66 66 A R H 3X S+ 0 0 133 -4,-0.9 4,-0.8 -5,-0.3 -1,-0.3 0.740 89.8 44.8 -47.9 -23.2 1.6 14.5 6.2 67 67 A A H X> S+ 0 0 1 -3,-2.6 4,-1.4 2,-0.2 3,-1.2 0.951 102.8 55.8 -85.3 -69.1 -0.5 12.9 9.0 68 68 A L H 3> S+ 0 0 5 -4,-0.4 4,-1.7 1,-0.3 9,-0.2 0.776 107.1 59.0 -34.3 -33.9 1.1 9.5 9.7 69 69 A R H 3X S+ 0 0 153 -4,-2.0 4,-1.0 2,-0.2 3,-0.3 0.963 97.5 55.1 -63.9 -54.0 4.2 11.7 10.3 70 70 A H H XX S+ 0 0 89 -3,-1.2 3,-0.7 -4,-0.8 4,-0.7 0.866 109.5 49.5 -46.9 -41.7 2.7 13.8 13.1 71 71 A Y H >X>S+ 0 0 4 -4,-1.4 3,-1.3 1,-0.2 5,-0.9 0.896 94.1 72.2 -66.4 -41.3 1.9 10.5 14.9 72 72 A Y H ><5S+ 0 0 39 -4,-1.7 3,-0.6 -3,-0.3 -1,-0.2 0.809 97.8 52.1 -43.3 -33.8 5.4 9.2 14.4 73 73 A K H <<5S+ 0 0 149 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.865 101.3 57.9 -72.8 -37.3 6.4 11.8 17.0 74 74 A L H <<5S- 0 0 103 -3,-1.3 -1,-0.2 -4,-0.7 -2,-0.2 0.531 115.8-117.9 -70.6 -4.4 3.7 10.5 19.5 75 75 A N T <<5S+ 0 0 106 -4,-0.8 -3,-0.2 -3,-0.6 16,-0.1 0.929 83.4 114.8 67.1 46.8 5.5 7.2 19.2 76 76 A I S S+ 0 0 7 0, 0.0 3,-1.6 0, 0.0 -1,-0.1 0.897 99.6 57.2 -69.8 -42.5 -4.7 2.7 18.1 94 94 A D G > S+ 0 0 101 1,-0.3 3,-0.9 2,-0.2 -2,-0.1 0.638 93.3 73.6 -64.4 -12.8 -7.8 2.2 20.3 95 95 A E G 3 S+ 0 0 134 -3,-0.5 -1,-0.3 1,-0.2 -3,-0.1 0.817 106.7 31.7 -70.5 -31.2 -5.4 3.0 23.2 96 96 A I G < S+ 0 0 56 -3,-1.6 2,-1.1 -4,-0.4 -1,-0.2 -0.027 86.5 127.1-115.2 28.2 -5.4 6.7 22.2 97 97 A M < + 0 0 74 -3,-0.9 2,-0.3 7,-0.1 -3,-0.1 -0.728 40.6 105.6 -90.8 94.2 -8.9 6.8 20.8 98 98 A S - 0 0 82 -2,-1.1 7,-0.5 0, 0.0 2,-0.2 -0.965 48.2-152.3-158.8 170.3 -10.6 9.7 22.6 99 99 A G + 0 0 61 -2,-0.3 3,-0.1 5,-0.1 -2,-0.0 -0.719 43.4 115.9-158.4 102.5 -11.8 13.3 22.2 100 100 A R S S- 0 0 230 -2,-0.2 2,-0.3 1,-0.1 -1,-0.0 0.583 80.1 -12.7-128.4 -63.8 -12.0 15.9 24.9 101 101 A T S S- 0 0 101 1,-0.0 -1,-0.1 0, 0.0 3,-0.1 -0.962 123.2 -12.4-152.8 131.1 -9.7 18.9 24.4 102 102 A D S S+ 0 0 121 -2,-0.3 2,-0.1 1,-0.2 -3,-0.0 0.842 92.4 157.0 47.8 37.0 -6.8 19.5 22.1 103 103 A R >> - 0 0 119 1,-0.1 3,-1.9 3,-0.0 4,-0.5 -0.457 64.0 -89.5 -89.5 164.2 -6.9 15.8 21.3 104 104 A L G >4 S+ 0 0 26 1,-0.3 3,-2.5 2,-0.2 -5,-0.1 0.837 122.6 72.3 -37.4 -43.6 -5.5 14.1 18.2 105 105 A E G >4 S+ 0 0 63 -7,-0.5 3,-1.5 1,-0.3 -1,-0.3 0.891 82.4 67.8 -39.7 -54.5 -8.9 14.6 16.7 106 106 A H G X4 S+ 0 0 110 -3,-1.9 3,-0.9 1,-0.3 2,-0.4 0.818 93.6 60.5 -36.3 -40.6 -8.2 18.4 16.4 107 107 A L G << S+ 0 0 42 -3,-2.5 -1,-0.3 -4,-0.5 -2,-0.2 -0.072 79.5 95.9 -82.9 36.2 -5.6 17.3 13.8 108 108 A E G < S+ 0 0 36 -3,-1.5 -1,-0.2 -2,-0.4 -2,-0.2 0.803 100.0 15.4 -93.0 -36.2 -8.4 15.8 11.7 109 109 A S S < S+ 0 0 64 -3,-0.9 4,-0.2 -4,-0.3 3,-0.2 -0.086 113.5 78.2-129.0 32.7 -9.0 18.8 9.4 110 110 A Q S > S+ 0 0 123 1,-0.1 2,-2.2 2,-0.1 3,-0.8 0.834 87.2 47.7-103.6 -63.8 -5.8 20.7 10.0 111 111 A E T 3 S+ 0 0 11 1,-0.2 -1,-0.1 -4,-0.2 -45,-0.1 -0.193 103.1 72.4 -76.2 48.2 -3.0 19.1 8.1 112 112 A L T 3 S- 0 0 11 -2,-2.2 2,-0.3 1,-0.3 -1,-0.2 0.624 108.2 -27.5-126.4 -45.8 -5.2 19.0 5.0 113 113 A S S < S+ 0 0 75 -3,-0.8 -1,-0.3 -4,-0.2 0, 0.0 -0.913 86.6 68.3-174.6 147.0 -5.5 22.5 3.7 114 114 A G - 0 0 64 -2,-0.3 -2,-0.1 -3,-0.1 -1,-0.1 0.003 69.7 -82.9 111.7 142.1 -5.5 26.1 4.9 115 115 A P - 0 0 120 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.133 26.7-128.4 -69.8 169.5 -2.8 28.6 6.3 116 116 A S - 0 0 117 2,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.564 23.9-153.5 -95.3 -12.2 -1.7 28.7 9.9 117 117 A S 0 0 114 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.850 360.0 360.0 38.8 44.4 -2.3 32.5 10.1 118 118 A G 0 0 115 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.571 360.0 360.0 -93.2 360.0 0.4 32.5 12.8