==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 14-DEC-05 2DAR . COMPND 2 MOLECULE: PDZ AND LIM DOMAIN PROTEIN 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.N.NIRAULA,Y.MUTO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6998.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 44.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-172.9 -9.2 12.2 32.1 2 2 A S - 0 0 125 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.959 360.0-113.2-153.3 167.8 -5.5 11.7 31.3 3 3 A S + 0 0 117 -2,-0.3 3,-0.0 1,-0.1 0, 0.0 -0.784 37.7 146.5-108.7 152.1 -2.6 13.3 29.4 4 4 A G + 0 0 48 -2,-0.3 -1,-0.1 1,-0.0 3,-0.1 0.181 14.8 144.8-141.1 -95.8 -0.8 11.9 26.4 5 5 A S + 0 0 146 1,-0.2 2,-0.3 0, 0.0 -1,-0.0 0.860 59.8 111.2 44.0 42.1 0.8 13.9 23.5 6 6 A S + 0 0 110 -3,-0.0 2,-0.3 2,-0.0 -1,-0.2 -0.999 36.3 154.8-146.2 142.7 3.5 11.3 23.4 7 7 A G - 0 0 66 -2,-0.3 2,-0.2 -3,-0.1 -3,-0.0 -0.935 32.2-107.4-155.6 176.8 4.5 8.5 21.0 8 8 A D - 0 0 148 -2,-0.3 2,-0.4 1,-0.0 -2,-0.0 -0.618 42.1 -88.1-109.3 170.2 7.4 6.3 19.8 9 9 A Q + 0 0 190 -2,-0.2 2,-0.3 0, 0.0 -1,-0.0 -0.641 53.5 164.9 -81.6 130.0 9.4 6.3 16.5 10 10 A D - 0 0 139 -2,-0.4 2,-0.1 1,-0.0 0, 0.0 -0.862 39.3 -81.9-137.9 171.7 7.9 4.3 13.7 11 11 A T - 0 0 96 -2,-0.3 -1,-0.0 1,-0.1 0, 0.0 -0.421 33.5-123.3 -76.1 151.1 8.3 3.8 10.0 12 12 A L S S+ 0 0 98 -2,-0.1 -1,-0.1 2,-0.0 54,-0.1 0.875 75.7 119.0 -60.3 -38.6 6.6 6.2 7.5 13 13 A V - 0 0 23 52,-0.1 54,-0.2 54,-0.1 2,-0.1 -0.004 51.9-165.4 -33.6 107.5 4.8 3.2 5.9 14 14 A Q B -A 66 0A 55 52,-2.1 52,-1.3 1,-0.0 2,-0.3 -0.402 6.4-142.7 -96.4 175.5 1.1 4.2 6.5 15 15 A R - 0 0 191 50,-0.2 2,-0.4 -2,-0.1 50,-0.1 -0.885 11.7-117.5-135.9 166.5 -2.0 2.1 6.3 16 16 A A - 0 0 14 46,-0.4 2,-0.8 -2,-0.3 26,-0.2 -0.882 24.9-122.0-110.3 138.9 -5.7 2.5 5.2 17 17 A E E -B 41 0B 144 24,-1.7 24,-1.5 -2,-0.4 2,-0.7 -0.680 25.8-134.4 -81.4 110.4 -8.7 2.1 7.4 18 18 A H E -B 40 0B 101 -2,-0.8 22,-0.2 22,-0.2 -1,-0.1 -0.517 22.3-157.9 -67.9 109.5 -10.9 -0.6 6.0 19 19 A I E -B 39 0B 28 20,-2.9 20,-0.8 -2,-0.7 3,-0.1 -0.789 10.3-131.0 -95.5 128.6 -14.5 0.8 6.1 20 20 A P > - 0 0 73 0, 0.0 4,-0.7 0, 0.0 19,-0.3 -0.159 34.5 -83.5 -69.7 167.4 -17.4 -1.6 6.1 21 21 A A T 4 S+ 0 0 62 1,-0.2 2,-0.7 2,-0.1 16,-0.2 -0.403 110.4 18.8 -73.2 149.0 -20.4 -1.3 3.8 22 22 A G T 4 S+ 0 0 65 14,-1.0 -1,-0.2 2,-0.2 3,-0.1 -0.177 98.2 96.3 86.6 -43.8 -23.3 1.0 4.8 23 23 A K T 4 S- 0 0 168 -2,-0.7 2,-0.3 -3,-0.2 -2,-0.1 0.923 102.0 -16.3 -41.8 -62.4 -21.1 2.9 7.3 24 24 A R < - 0 0 171 -4,-0.7 -2,-0.2 13,-0.1 -1,-0.2 -0.993 48.6-152.7-148.8 151.7 -20.4 5.6 4.7 25 25 A T + 0 0 74 -2,-0.3 11,-0.1 -3,-0.1 -4,-0.0 -0.550 33.9 165.1-125.9 66.7 -20.6 6.2 1.0 26 26 A P - 0 0 20 0, 0.0 9,-2.1 0, 0.0 2,-0.6 0.056 43.3 -89.0 -69.7-175.2 -17.9 8.8 0.1 27 27 A M B -E 34 0C 107 7,-0.2 19,-0.6 1,-0.1 7,-0.2 -0.898 40.9-120.5-106.3 121.8 -16.6 9.6 -3.3 28 28 A C B -c 46 0B 1 5,-1.5 19,-0.2 -2,-0.6 -1,-0.1 0.116 10.9-140.0 -47.7 170.1 -13.6 7.6 -4.6 29 29 A A S S+ 0 0 33 17,-0.5 18,-0.1 3,-0.1 -1,-0.1 0.767 94.1 37.1-104.9 -39.8 -10.4 9.4 -5.5 30 30 A H S S+ 0 0 139 16,-0.2 17,-0.1 1,-0.1 -2,-0.0 0.981 137.0 16.9 -76.8 -65.7 -9.3 7.6 -8.7 31 31 A C S S- 0 0 42 2,-0.1 -1,-0.1 0, 0.0 16,-0.1 0.756 93.5-142.8 -79.1 -26.0 -12.7 7.0 -10.4 32 32 A N + 0 0 106 1,-0.2 2,-0.4 14,-0.1 -3,-0.1 0.944 49.1 140.9 62.2 50.0 -14.4 9.6 -8.2 33 33 A Q - 0 0 123 -7,-0.0 -5,-1.5 1,-0.0 -1,-0.2 -0.970 61.4 -92.3-127.3 140.6 -17.6 7.5 -8.0 34 34 A V B -E 27 0C 74 -2,-0.4 2,-0.6 -7,-0.2 -7,-0.2 -0.185 41.2-135.5 -49.0 131.1 -20.0 7.0 -5.0 35 35 A I + 0 0 3 -9,-2.1 4,-0.1 1,-0.2 -1,-0.1 -0.834 26.2 176.2 -97.9 122.5 -18.9 3.9 -3.1 36 36 A R + 0 0 215 -2,-0.6 -14,-1.0 2,-0.1 -1,-0.2 0.884 68.2 40.1 -88.3 -46.5 -21.8 1.6 -2.0 37 37 A G S S- 0 0 28 1,-0.2 2,-0.2 -16,-0.2 -15,-0.2 0.095 113.0 -39.5 -85.8-158.5 -19.7 -1.2 -0.4 38 38 A P - 0 0 71 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.443 62.2-175.1 -69.8 136.2 -16.6 -1.1 1.8 39 39 A F E -B 19 0B 5 -20,-0.8 -20,-2.9 -19,-0.3 2,-0.5 -0.768 23.7-115.5-126.7 172.3 -14.0 1.5 0.9 40 40 A L E -BD 18 47B 3 7,-2.2 7,-1.4 -2,-0.2 2,-0.6 -0.949 19.2-155.9-116.0 124.2 -10.5 2.5 2.1 41 41 A V E +BD 17 46B 56 -24,-1.5 -24,-1.7 -2,-0.5 2,-0.3 -0.869 34.3 135.4-102.2 115.5 -9.8 5.9 3.6 42 42 A A E > + D 0 45B 7 3,-2.9 3,-1.0 -2,-0.6 -26,-0.1 -0.990 55.2 23.8-154.9 156.9 -6.2 7.1 3.4 43 43 A L T 3 S- 0 0 68 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.782 130.9 -60.4 56.8 27.2 -4.2 10.2 2.5 44 44 A G T 3 S+ 0 0 73 1,-0.3 2,-0.3 -3,-0.0 -1,-0.3 0.850 123.0 77.4 70.3 34.6 -7.3 12.2 3.5 45 45 A K E < S- D 0 42B 128 -3,-1.0 -3,-2.9 -19,-0.0 2,-0.3 -0.976 75.3-107.8-162.5 168.9 -9.4 10.6 0.9 46 46 A S E +cD 28 41B 10 -19,-0.6 -17,-0.5 -2,-0.3 2,-0.3 -0.717 30.4 179.7-106.6 157.7 -11.4 7.4 -0.1 47 47 A W E - D 0 40B 57 -7,-1.4 -7,-2.2 -2,-0.3 -19,-0.0 -0.967 31.9 -96.4-151.0 164.0 -10.5 4.8 -2.7 48 48 A H >> - 0 0 28 -2,-0.3 4,-3.0 -9,-0.2 3,-0.6 -0.690 21.1-139.1 -88.7 135.1 -11.8 1.5 -4.1 49 49 A P T 34 S+ 0 0 52 0, 0.0 -1,-0.1 0, 0.0 13,-0.1 0.453 105.2 52.7 -69.7 0.9 -10.5 -1.8 -2.8 50 50 A E T 34 S+ 0 0 154 10,-0.0 12,-0.0 3,-0.0 10,-0.0 0.683 118.4 30.5-106.5 -28.5 -10.4 -3.0 -6.4 51 51 A E T <4 S+ 0 0 70 -3,-0.6 2,-0.4 2,-0.0 -4,-0.0 0.809 85.7 108.7 -98.0 -40.7 -8.4 -0.2 -7.9 52 52 A F < + 0 0 10 -4,-3.0 9,-1.5 8,-0.1 2,-0.3 -0.138 51.7 146.8 -42.7 94.9 -6.2 0.8 -5.0 53 53 A N B -F 60 0D 60 -2,-0.4 7,-0.2 7,-0.2 20,-0.2 -0.921 50.8 -88.4-135.9 160.9 -3.0 -0.5 -6.4 54 54 A C - 0 0 2 5,-1.8 20,-0.2 -2,-0.3 -1,-0.1 -0.011 28.1-129.2 -59.8 171.1 0.7 0.4 -6.3 55 55 A A S S+ 0 0 57 18,-1.3 19,-0.1 3,-0.1 -1,-0.1 0.682 102.7 21.4 -96.5 -23.6 2.3 2.7 -8.8 56 56 A H S S+ 0 0 119 17,-0.3 18,-0.1 3,-0.1 -2,-0.0 0.803 137.4 28.5-107.4 -59.1 5.2 0.5 -9.7 57 57 A C S S- 0 0 35 2,-0.1 3,-0.1 18,-0.0 -3,-0.1 0.466 89.8-147.0 -83.5 -1.9 4.2 -3.1 -8.8 58 58 A K + 0 0 145 1,-0.1 2,-0.2 -5,-0.1 -3,-0.1 0.848 46.1 149.2 34.4 51.0 0.6 -2.2 -9.4 59 59 A N - 0 0 89 1,-0.1 -5,-1.8 2,-0.0 2,-0.3 -0.683 58.8 -76.0-109.6 164.5 -0.3 -4.6 -6.6 60 60 A T B -F 53 0D 73 -2,-0.2 4,-0.4 -7,-0.2 -7,-0.2 -0.422 40.1-173.8 -61.8 117.0 -3.1 -4.7 -4.0 61 61 A M + 0 0 0 -9,-1.5 -45,-0.1 -2,-0.3 -1,-0.1 -0.188 55.6 101.2-105.7 39.2 -2.3 -2.1 -1.3 62 62 A A S S+ 0 0 12 -10,-0.1 -46,-0.4 -13,-0.1 -1,-0.1 0.933 93.4 19.7 -85.6 -56.1 -5.2 -3.0 0.9 63 63 A Y S S+ 0 0 194 -3,-0.2 -47,-0.1 -48,-0.1 -2,-0.1 0.959 119.4 62.6 -79.0 -57.3 -3.5 -5.2 3.6 64 64 A I S S- 0 0 49 -4,-0.4 2,-0.0 1,-0.1 11,-0.0 -0.013 88.8-106.8 -61.8 172.8 0.1 -4.1 3.1 65 65 A G - 0 0 2 -50,-0.1 2,-0.3 -52,-0.0 11,-0.2 -0.120 28.5-155.6 -91.6-168.2 1.3 -0.5 3.7 66 66 A F B -A 14 0A 0 -52,-1.3 -52,-2.1 9,-0.3 2,-0.4 -0.970 8.7-140.7-167.6 154.4 2.3 2.2 1.3 67 67 A V E -G 74 0E 1 7,-2.0 7,-2.6 -2,-0.3 2,-0.3 -0.987 16.6-137.7-128.5 129.9 4.4 5.4 1.2 68 68 A E E +G 73 0E 95 -2,-0.4 2,-0.2 5,-0.2 5,-0.2 -0.624 26.1 168.6 -85.8 141.6 3.5 8.6 -0.7 69 69 A E S S- 0 0 79 3,-1.2 -2,-0.0 -2,-0.3 0, 0.0 -0.772 70.1 -29.5-157.4 105.8 6.1 10.5 -2.7 70 70 A K S S- 0 0 202 -2,-0.2 3,-0.1 1,-0.2 -2,-0.0 0.889 132.0 -38.2 53.3 42.5 5.5 13.4 -5.1 71 71 A G S S+ 0 0 76 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.945 117.0 111.8 75.3 50.2 2.0 11.9 -5.8 72 72 A A - 0 0 17 2,-0.0 -3,-1.2 -5,-0.0 2,-0.6 -0.901 54.8-145.6-157.9 124.3 2.9 8.2 -5.8 73 73 A L E -G 68 0E 26 -2,-0.3 -18,-1.3 -5,-0.2 2,-0.5 -0.813 18.2-173.1 -95.3 121.7 2.0 5.4 -3.4 74 74 A Y E -G 67 0E 50 -7,-2.6 -7,-2.0 -2,-0.6 -2,-0.0 -0.960 21.9-126.3-119.0 122.5 4.8 2.8 -2.9 75 75 A C > - 0 0 0 -2,-0.5 4,-2.5 -9,-0.3 3,-0.4 -0.264 34.5-101.8 -62.6 148.9 4.1 -0.4 -0.9 76 76 A E H > S+ 0 0 75 1,-0.2 4,-3.0 -11,-0.2 5,-0.3 0.830 124.7 57.3 -38.0 -41.4 6.5 -1.2 2.0 77 77 A L H > S+ 0 0 99 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.975 109.3 40.8 -56.7 -60.4 8.1 -3.7 -0.5 78 78 A C H > S+ 0 0 4 -3,-0.4 4,-2.9 2,-0.2 5,-0.3 0.931 118.5 48.5 -54.5 -49.8 8.9 -1.1 -3.2 79 79 A Y H X>S+ 0 0 47 -4,-2.5 4,-2.2 1,-0.2 5,-0.8 0.980 111.1 46.7 -54.9 -64.7 10.0 1.4 -0.6 80 80 A E H <5S+ 0 0 123 -4,-3.0 6,-0.4 1,-0.2 -1,-0.2 0.749 114.9 52.8 -50.8 -23.6 12.3 -0.8 1.4 81 81 A K H <5S+ 0 0 120 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.2 0.924 126.7 17.6 -78.8 -48.4 13.6 -1.9 -2.0 82 82 A F H <5S+ 0 0 97 -4,-2.9 3,-0.4 -3,-0.2 -3,-0.2 0.925 134.7 38.6 -88.1 -56.7 14.4 1.6 -3.4 83 83 A F T <5S+ 0 0 89 -4,-2.2 2,-2.1 -5,-0.3 -3,-0.2 0.990 118.2 46.6 -57.7 -67.6 14.4 3.7 -0.2 84 84 A A S