==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 15-DEC-05 2DBF . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6383.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 64.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 45.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-135.7 16.3 14.0 -10.8 2 2 A S - 0 0 126 1,-0.0 2,-0.0 2,-0.0 0, 0.0 0.903 360.0-117.5 60.5 103.1 14.9 15.5 -7.6 3 3 A S - 0 0 134 2,-0.0 2,-0.3 1,-0.0 -1,-0.0 -0.350 34.3-176.3 -69.0 149.0 14.9 13.0 -4.7 4 4 A G + 0 0 75 -2,-0.0 2,-0.1 2,-0.0 -1,-0.0 -0.904 20.9 143.7-154.4 121.8 11.6 12.1 -3.2 5 5 A S + 0 0 122 -2,-0.3 62,-0.1 2,-0.1 -2,-0.0 -0.556 32.1 108.8-159.8 86.2 10.6 9.8 -0.3 6 6 A S - 0 0 114 -2,-0.1 61,-0.1 60,-0.0 -2,-0.0 0.628 59.1-141.8-126.0 -47.0 7.7 10.8 1.9 7 7 A G - 0 0 20 1,-0.1 62,-0.3 2,-0.1 3,-0.1 0.245 11.1-132.4 89.7 144.9 4.9 8.4 1.3 8 8 A D S S+ 0 0 92 60,-0.8 4,-0.2 1,-0.1 61,-0.2 -0.238 75.7 101.9-125.7 43.2 1.1 8.9 1.1 9 9 A M > + 0 0 2 59,-0.6 3,-0.9 58,-0.5 -1,-0.1 0.696 62.9 76.2 -96.4 -25.1 -0.1 6.1 3.3 10 10 A K T 3 S+ 0 0 180 1,-0.3 -1,-0.1 58,-0.2 -2,-0.1 0.804 92.2 57.3 -55.9 -29.9 -0.8 8.2 6.3 11 11 A Q T 3 S+ 0 0 118 2,-0.1 -1,-0.3 82,-0.0 -2,-0.2 0.848 85.5 96.0 -70.4 -34.8 -3.9 9.4 4.5 12 12 A L S < S- 0 0 13 -3,-0.9 2,-0.1 -4,-0.2 77,-0.1 -0.362 79.2-125.0 -60.4 129.2 -5.3 5.9 4.2 13 13 A A >> - 0 0 48 1,-0.1 4,-1.7 -2,-0.1 3,-0.6 -0.383 13.7-119.5 -75.5 154.4 -7.7 5.0 7.0 14 14 A E H 3> S+ 0 0 120 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.902 115.3 56.1 -59.2 -43.0 -7.2 2.0 9.2 15 15 A D H 3> S+ 0 0 115 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.803 105.4 54.3 -60.0 -29.4 -10.5 0.5 8.0 16 16 A V H <> S+ 0 0 12 -3,-0.6 4,-0.8 1,-0.2 3,-0.4 0.929 112.0 40.4 -71.0 -47.1 -9.2 0.8 4.5 17 17 A K H X S+ 0 0 7 -4,-1.7 4,-1.1 1,-0.2 -2,-0.2 0.777 103.9 70.6 -72.1 -27.1 -6.0 -1.2 5.1 18 18 A L H X S+ 0 0 62 -4,-2.3 4,-0.6 1,-0.2 3,-0.4 0.871 98.8 48.3 -57.2 -38.8 -7.9 -3.6 7.3 19 19 A Q H >X S+ 0 0 88 -4,-0.9 4,-1.4 -3,-0.4 3,-0.6 0.820 100.7 65.2 -71.7 -31.7 -9.7 -5.0 4.2 20 20 A L H 3X S+ 0 0 0 -4,-0.8 4,-2.1 1,-0.3 5,-0.2 0.812 97.5 56.2 -60.4 -30.4 -6.4 -5.3 2.4 21 21 A Y H 3X S+ 0 0 10 -4,-1.1 4,-1.1 -3,-0.4 -1,-0.3 0.814 103.6 53.3 -71.4 -31.1 -5.3 -7.9 5.0 22 22 A K H << S+ 0 0 138 -4,-0.6 4,-0.2 -3,-0.6 -1,-0.2 0.804 111.6 46.3 -73.4 -30.1 -8.4 -10.0 4.2 23 23 A L H >< S+ 0 0 15 -4,-1.4 3,-2.2 2,-0.2 -2,-0.2 0.968 113.1 44.6 -75.9 -57.8 -7.5 -10.0 0.5 24 24 A L H 3< S+ 0 0 0 -4,-2.1 9,-1.1 1,-0.3 4,-0.2 0.779 97.8 77.4 -57.9 -26.9 -3.8 -10.9 0.7 25 25 A E T 3< + 0 0 134 -4,-1.1 -1,-0.3 -5,-0.2 -2,-0.2 0.754 69.4 104.6 -55.4 -24.3 -4.8 -13.5 3.2 26 26 A I S < S- 0 0 55 -3,-2.2 2,-3.0 5,-0.3 5,-0.2 -0.467 75.7-138.1 -64.2 112.7 -5.9 -15.6 0.2 27 27 A P + 0 0 115 0, 0.0 5,-0.2 0, 0.0 -1,-0.1 -0.314 55.7 137.2 -71.6 62.6 -3.2 -18.3 -0.3 28 28 A D > - 0 0 80 -2,-3.0 3,-0.9 3,-0.2 4,-0.2 -0.725 65.4-122.4-109.3 159.9 -3.3 -17.9 -4.1 29 29 A P T 3 S+ 0 0 102 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.804 115.8 24.7 -68.8 -29.9 -0.4 -17.7 -6.6 30 30 A D T 3 S+ 0 0 99 1,-0.1 50,-0.0 51,-0.1 0, 0.0 -0.132 126.5 48.3-126.6 36.0 -1.6 -14.3 -7.9 31 31 A K S < S+ 0 0 66 -3,-0.9 2,-0.3 -5,-0.2 -5,-0.3 0.064 81.1 114.3-163.0 31.7 -3.4 -13.1 -4.8 32 32 A N S > S- 0 0 25 -4,-0.2 4,-1.4 -5,-0.2 3,-0.2 -0.751 70.8-119.9-110.5 158.3 -1.1 -13.7 -1.8 33 33 A W H > S+ 0 0 38 -9,-1.1 4,-1.7 -2,-0.3 3,-0.2 0.888 114.3 56.8 -61.1 -40.3 0.6 -11.2 0.5 34 34 A A H > S+ 0 0 23 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.861 103.6 54.2 -59.8 -36.9 4.0 -12.6 -0.5 35 35 A T H > S+ 0 0 32 -3,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.864 107.4 50.0 -65.9 -36.7 3.2 -11.8 -4.1 36 36 A L H X S+ 0 0 0 -4,-1.4 4,-3.0 -3,-0.2 5,-0.3 0.810 101.3 64.4 -71.5 -30.5 2.4 -8.2 -3.2 37 37 A A H X>S+ 0 0 0 -4,-1.7 5,-3.4 1,-0.2 4,-2.7 0.917 103.8 45.7 -58.9 -45.6 5.7 -7.9 -1.3 38 38 A Q H <5S+ 0 0 143 -4,-1.3 -1,-0.2 4,-0.2 5,-0.2 0.922 113.9 48.7 -64.3 -45.5 7.7 -8.4 -4.5 39 39 A K H <5S+ 0 0 78 -4,-1.4 -2,-0.2 1,-0.1 -1,-0.2 0.940 119.8 37.5 -60.2 -49.6 5.6 -5.9 -6.5 40 40 A L H <5S- 0 0 9 -4,-3.0 -2,-0.2 -5,-0.1 -3,-0.2 0.989 122.1 -97.1 -66.6 -62.4 5.8 -3.2 -3.8 41 41 A G T <5S+ 0 0 52 -4,-2.7 -3,-0.2 -5,-0.3 -4,-0.1 0.496 90.4 105.1 142.8 44.6 9.4 -3.8 -2.7 42 42 A L > < + 0 0 12 -5,-3.4 3,-0.6 -8,-0.1 -4,-0.2 -0.033 33.1 122.0-133.6 29.6 9.6 -6.0 0.4 43 43 A G G > S+ 0 0 32 -6,-0.5 3,-1.1 1,-0.2 4,-0.3 0.776 73.3 59.9 -64.2 -26.2 10.8 -9.3 -1.1 44 44 A I G 3 S+ 0 0 157 1,-0.3 3,-0.4 -7,-0.1 -1,-0.2 0.833 107.4 44.4 -70.6 -33.3 13.8 -9.1 1.1 45 45 A L G <> S+ 0 0 69 -3,-0.6 4,-1.5 1,-0.2 -1,-0.3 0.003 82.0 108.2 -99.7 27.4 11.6 -9.2 4.2 46 46 A N H <> S+ 0 0 33 -3,-1.1 4,-1.7 1,-0.2 -1,-0.2 0.908 78.1 49.1 -69.5 -43.3 9.4 -11.9 2.8 47 47 A N H > S+ 0 0 110 -3,-0.4 4,-1.2 -4,-0.3 -1,-0.2 0.821 106.5 58.9 -65.6 -31.5 10.7 -14.6 5.2 48 48 A A H >> S+ 0 0 43 1,-0.2 4,-1.2 2,-0.2 3,-0.5 0.935 107.0 44.4 -63.4 -48.2 10.2 -12.2 8.1 49 49 A F H 3< S+ 0 0 0 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.849 105.8 62.9 -65.3 -34.9 6.5 -11.8 7.5 50 50 A R H 3< S+ 0 0 160 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.837 103.4 49.3 -59.0 -33.7 6.2 -15.6 7.0 51 51 A L H << S+ 0 0 136 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.844 97.1 86.4 -74.5 -35.0 7.3 -16.0 10.6 52 52 A S S < S- 0 0 42 -4,-1.2 6,-0.0 1,-0.1 5,-0.0 -0.197 89.7-116.7 -63.6 158.1 4.7 -13.5 11.9 53 53 A P S S+ 0 0 137 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.839 109.4 27.5 -65.3 -34.0 1.2 -14.6 12.7 54 54 A A >> + 0 0 31 1,-0.1 4,-2.0 2,-0.0 3,-0.9 -0.749 65.1 179.5-133.4 86.5 -0.3 -12.4 10.0 55 55 A P H 3> S+ 0 0 18 0, 0.0 4,-2.6 0, 0.0 -1,-0.1 0.894 87.4 53.8 -50.9 -46.0 2.2 -11.7 7.1 56 56 A S H 3> S+ 0 0 5 1,-0.2 4,-1.2 2,-0.2 5,-0.1 0.818 110.6 47.8 -60.2 -31.2 -0.4 -9.6 5.3 57 57 A K H <> S+ 0 0 86 -3,-0.9 4,-0.9 2,-0.2 -1,-0.2 0.805 113.1 47.0 -79.4 -31.4 -0.7 -7.5 8.5 58 58 A T H X S+ 0 0 29 -4,-2.0 4,-2.4 2,-0.2 5,-0.2 0.793 105.0 62.2 -79.4 -30.1 3.1 -7.2 8.9 59 59 A L H X S+ 0 0 0 -4,-2.6 4,-3.3 -5,-0.2 5,-0.3 0.979 108.7 38.4 -58.9 -60.5 3.6 -6.2 5.2 60 60 A M H X S+ 0 0 4 -4,-1.2 4,-1.8 1,-0.2 -1,-0.2 0.828 117.1 53.9 -60.6 -32.4 1.6 -3.0 5.3 61 61 A D H X S+ 0 0 79 -4,-0.9 4,-0.9 2,-0.2 -1,-0.2 0.851 116.4 36.9 -70.7 -35.2 3.0 -2.4 8.8 62 62 A N H X S+ 0 0 59 -4,-2.4 4,-0.9 -3,-0.3 -2,-0.2 0.788 116.8 52.3 -85.9 -31.4 6.5 -2.7 7.6 63 63 A Y H < S+ 0 0 21 -4,-3.3 -2,-0.2 -5,-0.2 -3,-0.2 0.816 108.1 52.0 -73.7 -31.6 5.9 -1.0 4.2 64 64 A E H >< S+ 0 0 53 -4,-1.8 3,-1.5 -5,-0.3 -1,-0.2 0.873 102.5 58.2 -71.9 -38.4 4.3 2.0 5.9 65 65 A V H 3< S+ 0 0 122 -4,-0.9 -1,-0.2 1,-0.3 -2,-0.2 0.820 106.0 51.0 -61.0 -31.2 7.3 2.5 8.2 66 66 A S T 3< S- 0 0 100 -4,-0.9 2,-0.9 1,-0.0 -1,-0.3 -0.123 134.9 -84.2 -98.4 35.9 9.4 2.8 5.1 67 67 A G < - 0 0 24 -3,-1.5 -58,-0.5 1,-0.1 -57,-0.2 -0.711 52.5-151.4 103.6 -83.7 7.2 5.4 3.5 68 68 A G - 0 0 5 -2,-0.9 -60,-0.8 -61,-0.1 -59,-0.6 0.816 7.4-152.2 74.9 108.5 4.4 3.5 1.8 69 69 A T > - 0 0 42 -62,-0.3 4,-1.4 -61,-0.2 3,-0.2 -0.867 17.1-144.0-114.8 147.8 2.8 5.1 -1.3 70 70 A V H > S+ 0 0 19 -2,-0.3 4,-2.5 1,-0.2 5,-0.3 0.822 99.8 64.3 -75.7 -32.5 -0.7 4.6 -2.6 71 71 A R H > S+ 0 0 189 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.821 109.3 40.5 -60.2 -31.5 0.5 4.8 -6.2 72 72 A E H > S+ 0 0 90 2,-0.2 4,-2.6 -3,-0.2 -1,-0.2 0.814 112.9 53.2 -85.8 -34.3 2.5 1.7 -5.7 73 73 A L H X S+ 0 0 0 -4,-1.4 4,-0.7 2,-0.2 -2,-0.2 0.818 113.9 43.6 -69.9 -31.3 -0.2 -0.1 -3.7 74 74 A V H X S+ 0 0 36 -4,-2.5 4,-1.1 2,-0.2 -1,-0.2 0.861 118.0 43.3 -81.1 -39.0 -2.7 0.5 -6.4 75 75 A E H X S+ 0 0 108 -4,-1.2 4,-2.3 -5,-0.3 -2,-0.2 0.893 109.4 56.6 -73.2 -41.5 -0.4 -0.4 -9.3 76 76 A A H X S+ 0 0 2 -4,-2.6 4,-1.0 1,-0.2 -1,-0.2 0.816 106.5 52.2 -59.7 -31.0 1.1 -3.5 -7.5 77 77 A L H X>S+ 0 0 0 -4,-0.7 5,-2.7 2,-0.2 4,-2.2 0.865 110.3 46.3 -73.5 -37.7 -2.5 -4.8 -7.2 78 78 A R H <5S+ 0 0 204 -4,-1.1 -2,-0.2 3,-0.2 -1,-0.2 0.815 107.0 58.7 -73.9 -31.3 -3.2 -4.4 -10.9 79 79 A Q H <5S+ 0 0 124 -4,-2.3 -1,-0.2 1,-0.1 -2,-0.2 0.826 116.3 34.4 -66.9 -32.0 0.1 -6.0 -11.8 80 80 A M H <5S- 0 0 19 -4,-1.0 -2,-0.2 -5,-0.2 -3,-0.1 0.945 121.8 -92.4 -86.2 -63.7 -0.9 -9.2 -10.0 81 81 A G T <5 + 0 0 38 -4,-2.2 2,-0.3 -5,-0.2 -3,-0.2 0.442 65.4 147.5 148.1 44.9 -4.7 -9.4 -10.5 82 82 A Y < + 0 0 6 -5,-2.7 -51,-0.0 1,-0.1 -1,-0.0 -0.799 13.7 166.1-104.3 145.0 -6.6 -7.7 -7.7 83 83 A T S > S+ 0 0 99 -2,-0.3 4,-1.2 3,-0.1 3,-0.2 0.685 79.8 41.5-120.1 -48.2 -10.0 -6.0 -8.1 84 84 A E H > S+ 0 0 125 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.870 109.0 60.7 -71.4 -37.9 -11.4 -5.5 -4.6 85 85 A A H > S+ 0 0 0 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.810 108.9 44.6 -59.2 -30.4 -8.0 -4.5 -3.2 86 86 A I H > S+ 0 0 18 2,-0.2 4,-2.4 -3,-0.2 -1,-0.2 0.787 109.5 54.9 -83.9 -30.5 -8.0 -1.6 -5.7 87 87 A E H X S+ 0 0 82 -4,-1.2 4,-1.8 1,-0.2 13,-0.4 0.817 104.2 55.5 -71.8 -31.4 -11.7 -0.6 -5.0 88 88 A V H X S+ 0 0 16 -4,-2.1 4,-0.6 2,-0.2 -1,-0.2 0.877 114.1 39.0 -68.6 -38.8 -11.0 -0.3 -1.3 89 89 A I H >X S+ 0 0 2 -4,-0.8 4,-2.9 -5,-0.2 3,-0.6 0.910 117.8 47.2 -77.4 -45.3 -8.2 2.2 -1.8 90 90 A Q H 3X S+ 0 0 72 -4,-2.4 4,-1.8 1,-0.2 -2,-0.2 0.820 105.4 61.8 -65.5 -31.4 -9.8 4.1 -4.7 91 91 A A H 3< S+ 0 0 39 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.813 116.9 29.9 -64.5 -30.6 -13.0 4.2 -2.6 92 92 A A H << S+ 0 0 59 -4,-0.6 -2,-0.2 -3,-0.6 -1,-0.2 0.728 111.1 66.1 -98.7 -29.7 -11.2 6.2 0.1 93 93 A S H < S- 0 0 61 -4,-2.9 2,-0.3 1,-0.2 -2,-0.2 0.889 121.7 -44.4 -59.5 -40.9 -8.7 8.0 -2.2 94 94 A S < - 0 0 78 -4,-1.8 2,-0.2 -5,-0.2 -1,-0.2 -0.969 45.3-117.2-173.7-178.9 -11.5 9.9 -3.9 95 95 A S S S+ 0 0 93 -2,-0.3 4,-0.2 -3,-0.1 -4,-0.1 -0.656 72.1 88.1-141.6 81.7 -15.0 9.8 -5.4 96 96 A G S S+ 0 0 60 2,-0.6 3,-0.1 -2,-0.2 -2,-0.0 0.414 92.4 16.5-135.2 -81.4 -15.1 10.6 -9.1 97 97 A P S S+ 0 0 120 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.892 133.9 14.9 -70.1 -41.0 -14.7 8.0 -11.8 98 98 A S + 0 0 65 -8,-0.1 -2,-0.6 -11,-0.0 2,-0.3 -0.997 64.1 172.3-138.8 142.1 -15.3 5.0 -9.5 99 99 A S 0 0 74 -2,-0.3 -8,-0.1 1,-0.3 -4,-0.1 -0.932 360.0 360.0-152.8 124.5 -16.7 4.7 -6.0 100 100 A G 0 0 89 -13,-0.4 -1,-0.3 -2,-0.3 -12,-0.1 0.263 360.0 360.0 88.1 360.0 -17.6 1.7 -3.9