==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 15-DEC-05 2DBH . COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7682.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 44.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.4 0, 0.0 12,-0.1 0.000 360.0 360.0 360.0-150.5 -6.8 21.5 12.3 2 2 A S - 0 0 91 10,-0.2 2,-1.0 7,-0.0 3,-0.2 -0.986 360.0-138.1-134.3 143.3 -9.3 23.3 10.1 3 3 A S S S+ 0 0 133 -2,-0.4 0, 0.0 1,-0.2 0, 0.0 -0.760 86.6 45.4-102.0 88.6 -12.7 25.0 10.8 4 4 A G > - 0 0 57 -2,-1.0 2,-0.9 3,-0.0 3,-0.7 0.440 61.9-170.8 143.6 59.7 -15.0 24.0 8.0 5 5 A S T 3 + 0 0 92 -3,-0.2 7,-0.0 1,-0.2 -2,-0.0 -0.631 61.8 76.6 -77.1 106.6 -14.9 20.3 7.0 6 6 A S T 3 S+ 0 0 126 -2,-0.9 -1,-0.2 0, 0.0 3,-0.1 0.150 85.0 48.6-173.9 -44.5 -16.9 20.1 3.8 7 7 A G S < S- 0 0 71 -3,-0.7 2,-0.4 1,-0.2 -2,-0.1 0.836 115.8 -33.1 -78.2-103.8 -15.0 21.4 0.8 8 8 A S + 0 0 119 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.960 68.2 152.6-130.7 115.3 -11.4 20.1 0.4 9 9 A S - 0 0 63 -2,-0.4 2,-0.3 -3,-0.1 3,-0.1 -0.996 36.0-129.4-144.3 135.9 -9.2 19.2 3.3 10 10 A A S S+ 0 0 80 -2,-0.3 6,-0.1 1,-0.2 -2,-0.0 -0.663 82.3 8.4 -86.5 136.7 -6.3 16.8 3.8 11 11 A L - 0 0 112 -2,-0.3 5,-0.2 3,-0.1 -1,-0.2 0.915 63.7-151.9 60.0 100.9 -6.4 14.4 6.7 12 12 A S S S- 0 0 100 3,-1.9 -10,-0.2 -3,-0.1 4,-0.1 0.921 74.8 -44.8 -67.1 -45.4 -9.7 14.5 8.5 13 13 A R S S+ 0 0 231 2,-0.7 3,-0.1 -12,-0.1 -3,-0.0 0.328 134.2 6.3-151.6 -56.7 -8.3 13.5 11.9 14 14 A N S S- 0 0 119 1,-0.2 6,-0.3 2,-0.0 2,-0.3 -0.063 126.6 -40.3-130.3 31.4 -5.9 10.6 11.7 15 15 A G - 0 0 16 4,-0.1 -3,-1.9 5,-0.1 -2,-0.7 -0.911 40.8-144.8 142.1-169.1 -5.6 10.2 7.9 16 16 A S S S+ 0 0 63 2,-0.4 3,-0.2 -2,-0.3 59,-0.1 0.185 89.0 33.9-157.2 -67.8 -7.7 10.2 4.7 17 17 A F S S+ 0 0 62 57,-0.5 2,-0.3 1,-0.3 58,-0.1 0.938 132.2 0.6 -69.1 -48.6 -6.7 7.7 2.0 18 18 A I - 0 0 14 56,-0.7 -2,-0.4 53,-0.1 -1,-0.3 -0.996 66.9-170.0-146.5 138.3 -5.5 5.0 4.4 19 19 A T > - 0 0 29 -2,-0.3 4,-1.6 -3,-0.2 3,-0.1 -0.767 39.6-106.5-122.8 169.0 -5.4 4.7 8.2 20 20 A K H > S+ 0 0 140 -6,-0.3 4,-1.2 -2,-0.2 5,-0.1 0.815 116.4 62.8 -63.4 -30.8 -3.9 2.2 10.7 21 21 A E H >> S+ 0 0 139 1,-0.2 4,-1.5 2,-0.2 3,-0.7 0.946 104.7 44.0 -59.6 -51.0 -7.4 0.9 11.4 22 22 A K H 3> S+ 0 0 87 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.857 106.6 62.1 -63.0 -36.0 -7.9 -0.3 7.8 23 23 A K H 3X S+ 0 0 30 -4,-1.6 4,-1.4 1,-0.2 -1,-0.2 0.814 104.8 48.6 -60.0 -30.7 -4.4 -1.8 7.9 24 24 A D H X S+ 0 0 6 -4,-1.4 3,-1.1 2,-0.2 4,-1.0 0.956 111.7 42.3 -72.2 -52.9 -6.5 -6.5 6.1 27 27 A L H 3X S+ 0 0 13 -4,-1.4 4,-3.7 1,-0.3 5,-0.3 0.804 103.6 69.6 -64.2 -29.5 -4.0 -8.5 8.2 28 28 A R H 3X S+ 0 0 167 -4,-2.3 4,-0.6 1,-0.2 -1,-0.3 0.805 100.7 47.4 -58.6 -29.8 -7.0 -9.8 10.2 29 29 A Q H > S+ 0 0 102 2,-0.2 4,-3.3 3,-0.1 3,-1.5 0.913 75.4 55.6 -88.3 -52.6 3.1 -11.4 -3.5 39 39 A P H 3> S+ 0 0 50 0, 0.0 4,-1.0 0, 0.0 5,-0.1 0.776 105.1 57.8 -51.5 -28.1 0.5 -10.2 -6.1 40 40 A I H 3> S+ 0 0 0 2,-0.2 4,-0.6 1,-0.2 -2,-0.2 0.819 114.9 34.6 -73.2 -31.9 -0.3 -7.4 -3.7 41 41 A F H <> S+ 0 0 14 -3,-1.5 4,-2.8 -4,-0.4 5,-0.2 0.824 110.0 62.0 -90.1 -37.6 3.2 -6.1 -3.7 42 42 A D H < S+ 0 0 100 -4,-3.3 4,-0.3 1,-0.2 -2,-0.2 0.810 110.5 42.8 -58.3 -30.5 4.1 -7.0 -7.3 43 43 A D H X S+ 0 0 66 -4,-1.0 4,-0.7 -5,-0.3 3,-0.4 0.788 117.2 45.2 -85.5 -31.1 1.3 -4.5 -8.3 44 44 A M H X S+ 0 0 0 -4,-0.6 4,-2.5 1,-0.2 -2,-0.2 0.698 92.2 81.6 -84.2 -21.4 2.3 -1.9 -5.8 45 45 A L H < S+ 0 0 75 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.1 0.796 95.4 47.7 -53.5 -29.3 6.0 -2.2 -6.6 46 46 A H H 4 S+ 0 0 175 -3,-0.4 -1,-0.2 -4,-0.3 -2,-0.2 0.933 109.5 48.8 -78.0 -49.6 5.3 0.1 -9.6 47 47 A F H < S+ 0 0 79 -4,-0.7 -2,-0.2 33,-0.1 -1,-0.2 0.817 107.5 71.6 -59.9 -31.2 3.4 2.7 -7.7 48 48 A L S < S- 0 0 9 -4,-2.5 21,-0.0 1,-0.1 3,-0.0 -0.300 83.7-120.3 -81.8 169.3 6.1 2.8 -5.1 49 49 A N > - 0 0 84 1,-0.1 4,-1.9 -2,-0.1 -1,-0.1 -0.665 21.5-111.0-108.4 165.2 9.6 4.2 -5.6 50 50 A P H > S+ 0 0 100 0, 0.0 4,-0.7 0, 0.0 -1,-0.1 0.864 120.5 46.9 -61.6 -37.7 13.1 2.6 -5.4 51 51 A E H > S+ 0 0 156 1,-0.2 4,-0.6 2,-0.2 3,-0.2 0.808 109.8 54.0 -74.4 -30.7 13.9 4.5 -2.2 52 52 A E H >> S+ 0 0 48 1,-0.2 4,-1.0 2,-0.2 3,-0.7 0.848 98.9 62.0 -71.5 -35.2 10.5 3.7 -0.7 53 53 A L H 3X S+ 0 0 54 -4,-1.9 4,-3.0 1,-0.2 3,-0.2 0.811 93.6 65.5 -60.3 -30.4 11.1 -0.1 -1.2 54 54 A R H 3X S+ 0 0 162 -4,-0.7 4,-1.3 -3,-0.2 -1,-0.2 0.889 97.7 52.9 -59.6 -40.9 14.1 0.2 1.1 55 55 A V H << S+ 0 0 61 -3,-0.7 4,-0.3 -4,-0.6 -1,-0.2 0.830 116.0 40.1 -64.4 -32.6 11.8 1.1 4.0 56 56 A I H >< S+ 0 0 3 -4,-1.0 3,-1.3 -3,-0.2 -2,-0.2 0.793 105.4 64.8 -85.6 -31.8 9.8 -2.0 3.3 57 57 A E H 3< S+ 0 0 147 -4,-3.0 -2,-0.2 1,-0.3 -1,-0.2 0.814 91.4 66.3 -60.4 -30.6 12.7 -4.3 2.5 58 58 A E T 3< S+ 0 0 114 -4,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.813 86.4 80.8 -61.0 -30.6 13.8 -3.9 6.1 59 59 A I < - 0 0 13 -3,-1.3 -1,-0.1 -4,-0.3 6,-0.0 -0.702 57.4-178.4 -83.1 110.5 10.7 -5.8 7.2 60 60 A P + 0 0 105 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.895 58.0 86.2 -74.3 -41.7 11.4 -9.6 6.7 61 61 A Q S > S- 0 0 107 1,-0.1 4,-0.5 2,-0.0 -2,-0.0 -0.178 70.8-144.0 -58.9 152.9 7.9 -10.7 7.8 62 62 A A H > S+ 0 0 56 2,-0.2 4,-1.5 3,-0.1 -1,-0.1 0.885 97.0 49.3 -86.0 -44.9 5.2 -10.8 5.2 63 63 A E H > S+ 0 0 54 1,-0.2 4,-0.9 2,-0.2 3,-0.4 0.933 114.0 45.8 -60.2 -48.1 2.3 -9.7 7.4 64 64 A D H > S+ 0 0 69 1,-0.2 4,-1.1 2,-0.2 3,-0.3 0.821 105.0 63.8 -64.9 -31.3 4.2 -6.7 8.7 65 65 A K H >X S+ 0 0 56 -4,-0.5 4,-1.8 1,-0.2 3,-0.6 0.892 98.1 54.1 -59.9 -41.1 5.3 -5.9 5.2 66 66 A L H 3X S+ 0 0 1 -4,-1.5 4,-1.2 -3,-0.4 -1,-0.2 0.828 102.2 58.9 -62.9 -32.2 1.7 -5.3 4.1 67 67 A D H 3X S+ 0 0 49 -4,-0.9 4,-0.8 -3,-0.3 -1,-0.2 0.824 107.0 47.0 -66.5 -31.7 1.4 -2.8 7.0 68 68 A R H X S+ 0 0 29 -4,-1.7 4,-1.3 2,-0.2 3,-1.0 0.949 122.6 38.2 -79.7 -54.6 3.5 4.6 2.0 73 73 A I H 3X S+ 0 0 0 -4,-1.8 4,-1.2 1,-0.2 8,-0.2 0.821 106.5 68.7 -66.5 -31.5 0.6 4.5 -0.4 74 74 A G H 3< S+ 0 0 6 -4,-1.9 -56,-0.7 1,-0.2 -57,-0.5 0.772 110.6 33.7 -58.9 -25.9 -1.7 5.8 2.3 75 75 A V H <4 S+ 0 0 109 -3,-1.0 -1,-0.2 -4,-0.4 -2,-0.2 0.639 105.4 74.6-102.1 -21.0 0.1 9.1 2.1 76 76 A K H < S- 0 0 70 -4,-1.3 2,-0.3 1,-0.2 -2,-0.2 0.985 105.9 -82.6 -54.7 -69.6 0.8 9.0 -1.6 77 77 A S X - 0 0 44 -4,-1.2 4,-1.2 1,-0.1 -1,-0.2 -0.961 34.8 -82.8-178.3-169.8 -2.7 9.8 -2.9 78 78 A Q H > S+ 0 0 125 -2,-0.3 4,-2.6 2,-0.2 5,-0.3 0.784 116.2 65.4 -87.4 -31.2 -6.1 8.4 -3.8 79 79 A E H 4 S+ 0 0 165 1,-0.2 4,-0.3 2,-0.2 -1,-0.2 0.825 116.3 29.7 -60.1 -32.3 -5.1 7.1 -7.2 80 80 A A H > S+ 0 0 6 -7,-0.2 4,-1.8 2,-0.1 -1,-0.2 0.772 116.4 58.5 -96.5 -33.9 -2.8 4.7 -5.5 81 81 A S H X S+ 0 0 3 -4,-1.2 4,-2.5 -8,-0.2 5,-0.3 0.930 104.4 51.0 -61.8 -47.5 -4.7 4.2 -2.3 82 82 A Q H X S+ 0 0 123 -4,-2.6 4,-1.3 1,-0.2 -1,-0.2 0.821 109.5 52.6 -60.1 -31.4 -7.8 3.0 -4.1 83 83 A T H > S+ 0 0 41 -5,-0.3 4,-2.5 -4,-0.3 -1,-0.2 0.855 110.2 47.4 -72.9 -36.1 -5.6 0.5 -6.0 84 84 A L H X S+ 0 0 0 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.970 114.4 43.3 -69.2 -55.8 -4.1 -0.9 -2.7 85 85 A L H < S+ 0 0 38 -4,-2.5 4,-0.5 1,-0.2 -1,-0.2 0.815 122.6 41.8 -60.1 -30.8 -7.4 -1.3 -0.9 86 86 A D H X S+ 0 0 94 -4,-1.3 4,-3.2 -5,-0.3 3,-0.3 0.820 108.5 58.6 -85.1 -34.9 -8.9 -2.8 -4.0 87 87 A S H X S+ 0 0 8 -4,-2.5 4,-3.2 1,-0.2 5,-0.5 0.892 100.4 57.0 -61.5 -41.1 -5.8 -4.9 -5.0 88 88 A V H X S+ 0 0 1 -4,-2.2 4,-0.9 1,-0.2 -1,-0.2 0.835 118.0 33.6 -59.7 -33.4 -6.0 -6.8 -1.7 89 89 A Y H 4 S+ 0 0 85 -4,-0.5 -2,-0.2 -3,-0.3 -1,-0.2 0.763 118.9 51.5 -92.1 -30.7 -9.6 -7.8 -2.6 90 90 A S H < S+ 0 0 82 -4,-3.2 -2,-0.2 1,-0.1 -3,-0.2 0.813 120.2 35.0 -75.5 -31.3 -9.0 -8.0 -6.3 91 91 A H H < S+ 0 0 69 -4,-3.2 -3,-0.2 1,-0.2 -2,-0.2 0.808 125.8 40.3 -90.5 -35.5 -6.0 -10.3 -5.8 92 92 A L >< + 0 0 27 -4,-0.9 3,-0.8 -5,-0.5 4,-0.4 -0.704 61.3 157.7-117.0 78.8 -7.3 -12.2 -2.8 93 93 A P G > + 0 0 83 0, 0.0 3,-1.3 0, 0.0 5,-0.3 0.767 68.3 72.2 -70.6 -26.0 -11.0 -12.8 -3.4 94 94 A D G 3 S+ 0 0 151 1,-0.3 -5,-0.1 -3,-0.2 -2,-0.1 0.816 86.1 66.2 -58.7 -31.0 -10.9 -15.7 -0.9 95 95 A L G < S+ 0 0 38 -3,-0.8 -1,-0.3 -7,-0.2 2,-0.3 0.836 103.0 53.4 -60.1 -33.4 -10.7 -13.2 1.8 96 96 A L S < S- 0 0 66 -3,-1.3 0, 0.0 -4,-0.4 0, 0.0 -0.690 71.3-147.0-103.6 157.4 -14.2 -12.0 0.9 97 97 A S S S- 0 0 133 -2,-0.3 -3,-0.1 1,-0.2 -1,-0.0 -0.138 83.3 -27.6-113.0 35.6 -17.4 -14.0 0.6 98 98 A G - 0 0 47 -5,-0.3 -1,-0.2 2,-0.1 -4,-0.0 0.502 50.9-138.7 118.7 96.6 -19.0 -12.0 -2.1 99 99 A P - 0 0 113 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.758 45.7-154.5 -50.2 -25.8 -18.3 -8.3 -2.8 100 100 A S - 0 0 91 1,-0.1 -2,-0.1 2,-0.1 -3,-0.0 0.388 17.8-130.5 61.4 154.5 -22.0 -8.0 -3.4 101 101 A S 0 0 139 1,-0.1 -1,-0.1 -3,-0.0 -3,-0.0 0.718 360.0 360.0-107.1 -34.0 -23.6 -5.3 -5.6 102 102 A G 0 0 135 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 -0.259 360.0 360.0 165.4 360.0 -26.4 -4.0 -3.3