==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 07-JAN-06 2DCI . COMPND 2 MOLECULE: HEMAGGLUTININ; . SOURCE 2 SYNTHETIC: YES; . AUTHOR L.K.TAMM,A.L.LAI . 20 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 30.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 113 0, 0.0 3,-2.0 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 157.3 -11.2 -6.6 3.7 2 2 A L G >> + 0 0 144 1,-0.3 3,-2.0 2,-0.2 4,-0.5 0.667 360.0 73.2 -55.3 -22.9 -9.7 -5.8 0.2 3 3 A F G >4 S+ 0 0 130 1,-0.3 3,-1.8 2,-0.2 -1,-0.3 0.897 88.2 63.0 -53.7 -44.0 -8.5 -2.4 1.4 4 4 A G G <4 S+ 0 0 74 -3,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.570 98.2 55.3 -60.5 -14.8 -5.8 -4.2 3.4 5 5 A A G <4 S+ 0 0 72 -3,-2.0 -1,-0.3 -4,-0.2 -2,-0.2 0.603 127.3 12.5 -90.4 -16.7 -4.4 -5.5 0.0 6 6 A I S X< S+ 0 0 76 -3,-1.8 3,-2.7 -4,-0.5 -2,-0.1 0.609 85.4 99.6-116.1 -92.7 -4.0 -1.9 -1.3 7 7 A A T >> S+ 0 0 16 1,-0.3 4,-3.0 -4,-0.2 3,-2.9 -0.058 97.0 39.8 24.4 -86.8 -4.3 1.2 0.9 8 8 A G H 3>>S+ 0 0 30 1,-0.3 5,-2.8 2,-0.2 6,-2.6 0.705 108.4 64.7 -46.3 -30.0 -0.5 1.9 1.4 9 9 A F H <45S+ 0 0 108 -3,-2.7 -1,-0.3 4,-0.3 -2,-0.2 0.680 119.4 23.9 -67.4 -18.0 0.0 0.9 -2.4 10 10 A I H <45S+ 0 0 123 -3,-2.9 -2,-0.2 3,-0.1 -1,-0.1 0.711 117.5 60.3-111.7 -45.9 -2.1 4.0 -3.3 11 11 A E H <5S- 0 0 133 -4,-3.0 -3,-0.2 1,-0.1 -2,-0.2 0.656 142.3 -24.2 -65.8 -18.3 -1.6 6.2 -0.2 12 12 A N T <5S- 0 0 104 -4,-1.2 -3,-0.2 -5,-0.3 -4,-0.1 0.206 94.5 -87.3-147.4 -59.8 2.2 6.2 -0.9 13 13 A G S > - 0 0 13 -6,-2.6 3,-1.2 -8,-0.1 4,-0.8 0.972 66.5-153.7 53.4 67.3 4.0 0.6 -0.2 15 15 A E T 34 S+ 0 0 137 -7,-0.4 -1,-0.1 1,-0.2 -2,-0.1 -0.304 80.9 37.4 -53.4 145.1 6.6 2.5 1.8 16 16 A G T 3> S+ 0 0 43 1,-0.0 4,-2.0 0, 0.0 -1,-0.2 -0.208 103.7 74.8 91.9 -35.3 8.8 0.1 3.7 17 17 A M T <4 S+ 0 0 134 -3,-1.2 -2,-0.2 2,-0.2 -3,-0.1 0.821 106.9 34.0 -70.9 -34.4 8.6 -2.3 0.8 18 18 A I T < S+ 0 0 124 -4,-0.8 -1,-0.2 1,-0.1 -3,-0.1 0.916 124.8 43.7 -72.7 -55.7 11.1 0.1 -1.0 19 19 A D T 4 0 0 126 1,-0.2 -2,-0.2 0, 0.0 -1,-0.1 0.611 360.0 360.0 -77.1 -19.4 13.0 1.1 2.1 20 20 A G < 0 0 108 -4,-2.0 -1,-0.2 0, 0.0 -3,-0.1 -0.010 360.0 360.0 -74.9 360.0 13.4 -2.4 3.8