==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 11-NOV-99 1DDW . COMPND 2 MOLECULE: GLGF-DOMAIN PROTEIN HOMER; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.BENEKEN,J.C.TU,B.XIAO,P.F.WORLEY,D.J.LEAHY . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6669.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 44 39.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 165 0, 0.0 39,-0.3 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 159.4 22.1 13.4 24.1 2 2 A G + 0 0 34 1,-0.3 38,-1.7 38,-0.1 39,-0.9 0.851 360.0 31.1 -76.5 -35.8 19.9 15.5 26.3 3 3 A E E S-A 39 0A 105 36,-0.2 -1,-0.3 37,-0.1 36,-0.2 -0.943 76.1-165.9-127.8 113.7 17.7 16.7 23.4 4 4 A Q E -A 38 0A 61 34,-3.5 34,-2.8 -2,-0.5 2,-0.3 -0.851 15.2-137.8-106.4 119.6 17.2 14.3 20.5 5 5 A P E +A 37 0A 84 0, 0.0 32,-0.2 0, 0.0 3,-0.1 -0.536 33.3 160.8 -71.2 132.0 15.8 15.5 17.1 6 6 A I E - 0 0 80 30,-2.3 2,-0.3 1,-0.4 31,-0.2 0.771 54.9 -0.0-119.4 -51.3 13.3 13.0 15.8 7 7 A F E -A 36 0A 40 29,-1.7 29,-3.0 2,-0.0 -1,-0.4 -0.998 53.7-169.0-148.8 139.9 10.9 14.3 13.1 8 8 A S E +A 35 0A 78 -2,-0.3 27,-0.2 27,-0.2 2,-0.2 -0.999 14.3 155.3-135.7 139.5 10.4 17.7 11.5 9 9 A T E -A 34 0A 22 25,-2.8 25,-2.7 -2,-0.4 2,-0.4 -0.740 33.6-112.3-142.1-175.4 7.6 19.0 9.2 10 10 A R E +A 33 0A 134 23,-0.3 81,-0.4 -2,-0.2 2,-0.3 -0.978 39.0 143.4-131.0 148.7 6.1 22.5 8.3 11 11 A A E -A 32 0A 2 21,-2.2 21,-2.9 -2,-0.4 2,-0.4 -0.967 50.4 -98.6-170.0 162.6 2.8 24.1 9.0 12 12 A H E -D 89 0B 80 77,-2.3 77,-2.7 -2,-0.3 2,-0.4 -0.763 45.8-138.8 -88.2 139.3 1.0 27.3 9.9 13 13 A V E +D 88 0B 1 17,-0.5 14,-3.0 -2,-0.4 15,-1.4 -0.826 25.8 171.7-108.1 142.8 0.4 27.5 13.6 14 14 A F E -DE 87 26B 47 73,-2.6 73,-2.6 -2,-0.4 2,-0.3 -0.911 18.0-153.4-139.5 162.2 -2.7 28.7 15.4 15 15 A Q E -DE 86 25B 53 10,-2.3 10,-2.7 -2,-0.3 71,-0.2 -0.983 30.0-109.7-134.7 148.5 -4.1 28.8 18.9 16 16 A I E - E 0 24B 13 69,-1.8 69,-0.3 -2,-0.3 8,-0.2 -0.437 46.6 -90.9 -75.3 152.4 -7.8 29.0 19.9 17 17 A D > - 0 0 17 6,-2.3 4,-2.3 1,-0.1 3,-0.3 -0.496 32.2-136.7 -65.2 128.1 -9.1 32.3 21.4 18 18 A P T 4 S+ 0 0 120 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.839 94.8 58.9 -51.9 -42.3 -8.7 32.1 25.2 19 19 A N T 4 S- 0 0 141 1,-0.2 -3,-0.0 4,-0.0 -2,-0.0 0.884 128.1 -0.2 -61.6 -51.3 -12.1 33.6 25.8 20 20 A T T 4 S- 0 0 58 -3,-0.3 -1,-0.2 3,-0.1 -4,-0.0 0.476 82.9-131.5-122.1 -4.9 -14.5 31.3 24.1 21 21 A K S < S+ 0 0 146 -4,-2.3 -5,-0.1 2,-0.1 3,-0.1 0.852 84.5 91.2 57.2 38.4 -12.3 28.6 22.7 22 22 A K + 0 0 156 -5,-0.2 2,-0.4 1,-0.1 -1,-0.1 0.631 62.6 74.6-129.1 -31.9 -14.0 28.8 19.3 23 23 A N S S- 0 0 105 -6,-0.1 -6,-2.3 1,-0.0 2,-0.4 -0.725 74.2-130.6 -90.0 133.2 -12.1 31.4 17.1 24 24 A W E -E 16 0B 87 -2,-0.4 -8,-0.2 -8,-0.2 -1,-0.0 -0.661 18.4-162.7 -86.1 133.9 -8.7 30.5 15.6 25 25 A V E -E 15 0B 67 -10,-2.7 -10,-2.3 -2,-0.4 2,-0.1 -0.960 20.3-124.0-116.1 124.0 -5.9 32.9 16.1 26 26 A P E -E 14 0B 86 0, 0.0 -12,-0.3 0, 0.0 3,-0.1 -0.468 24.6-178.1 -67.5 140.8 -2.8 32.7 13.9 27 27 A T S S+ 0 0 33 -14,-3.0 2,-0.3 1,-0.2 -13,-0.2 0.579 70.6 40.1-109.1 -24.3 0.5 32.4 15.8 28 28 A S - 0 0 7 -15,-1.4 -1,-0.2 1,-0.1 4,-0.1 -0.936 63.3-152.8-123.7 148.4 2.9 32.3 12.9 29 29 A K S S+ 0 0 180 -2,-0.3 2,-0.2 -3,-0.1 -1,-0.1 0.773 86.4 37.6 -88.4 -29.6 2.7 34.5 9.8 30 30 A H S S- 0 0 133 -19,-0.1 -17,-0.5 1,-0.0 2,-0.3 -0.658 100.8 -92.1-111.5 169.8 4.5 31.9 7.8 31 31 A A - 0 0 27 -2,-0.2 2,-0.3 -19,-0.2 -19,-0.3 -0.617 54.7-167.9 -74.5 143.9 4.5 28.2 7.8 32 32 A V E -A 11 0A 8 -21,-2.9 -21,-2.2 -2,-0.3 2,-0.3 -0.852 28.2 -85.1-130.8 170.3 7.2 27.2 10.2 33 33 A T E -A 10 0A 60 17,-0.4 17,-0.5 -2,-0.3 2,-0.4 -0.596 40.1-169.2 -77.4 131.7 9.1 24.0 11.0 34 34 A V E +AB 9 49A 0 -25,-2.7 -25,-2.8 -2,-0.3 2,-0.3 -0.999 15.9 179.9-122.3 130.4 7.2 21.9 13.7 35 35 A S E -AB 8 48A 7 13,-2.5 13,-2.5 -2,-0.4 2,-0.5 -0.904 32.0-129.9-136.6 161.7 9.2 19.1 15.2 36 36 A Y E -AB 7 47A 0 -29,-3.0 -30,-2.3 -2,-0.3 -29,-1.7 -0.930 30.6-179.5-107.9 128.8 9.2 16.2 17.6 37 37 A F E -AB 5 46A 34 9,-2.4 9,-2.7 -2,-0.5 2,-0.6 -0.950 23.6-135.8-124.6 147.8 12.2 16.0 20.0 38 38 A Y E -AB 4 45A 47 -34,-2.8 -34,-3.5 -2,-0.3 2,-0.8 -0.929 14.3-158.9-107.5 118.4 13.0 13.5 22.6 39 39 A D E >> +AB 3 44A 10 5,-3.0 5,-1.9 -2,-0.6 4,-0.8 -0.873 11.9 179.6 -96.8 107.2 14.2 15.1 25.9 40 40 A S T 45S+ 0 0 53 -38,-1.7 -1,-0.1 -2,-0.8 -37,-0.1 0.612 77.0 68.5 -85.2 -12.1 16.1 12.4 27.8 41 41 A T T 45S+ 0 0 105 -39,-0.9 -1,-0.2 1,-0.2 -38,-0.1 0.812 121.5 18.8 -73.8 -27.6 16.9 14.8 30.6 42 42 A R T 45S- 0 0 156 -40,-0.3 -2,-0.2 -3,-0.2 -1,-0.2 0.376 105.0-124.7-118.8 -5.9 13.1 14.6 31.4 43 43 A N T <5 + 0 0 107 -4,-0.8 2,-0.3 1,-0.2 -3,-0.2 0.953 69.3 109.4 59.2 55.6 12.2 11.5 29.6 44 44 A V E < -B 39 0A 35 -5,-1.9 -5,-3.0 18,-0.0 2,-0.3 -0.984 67.0-115.9-153.3 155.9 9.4 12.9 27.4 45 45 A Y E -B 38 0A 46 16,-0.3 16,-2.5 61,-0.3 2,-0.4 -0.728 33.2-160.4 -91.9 146.7 8.7 13.8 23.7 46 46 A R E -BC 37 60A 29 -9,-2.7 -9,-2.4 -2,-0.3 2,-0.7 -0.970 17.3-138.3-131.1 145.3 8.2 17.5 23.0 47 47 A I E -BC 36 59A 0 12,-2.4 12,-2.2 -2,-0.4 2,-0.4 -0.928 33.8-175.0-102.2 118.6 6.5 19.3 20.1 48 48 A I E +BC 35 58A 28 -13,-2.5 -13,-2.5 -2,-0.7 2,-0.3 -0.953 15.1 165.1-125.6 135.2 8.7 22.3 19.3 49 49 A S E -BC 34 57A 3 8,-2.2 7,-3.2 -2,-0.4 8,-1.7 -0.981 11.0-168.5-148.3 133.2 8.3 25.2 16.9 50 50 A L E - C 0 55A 87 -17,-0.5 2,-0.7 -2,-0.3 -17,-0.4 -0.926 15.4-152.8-121.1 145.4 10.1 28.5 16.6 51 51 A D E > S- C 0 54A 50 3,-2.7 3,-2.2 -2,-0.4 2,-0.3 -0.976 83.0 -43.9-112.4 106.6 9.1 31.5 14.5 52 52 A G T 3 S- 0 0 69 -2,-0.7 -2,-0.0 1,-0.3 0, 0.0 -0.542 125.9 -26.1 67.4-126.5 12.5 33.0 14.0 53 53 A S T 3 S+ 0 0 124 -2,-0.3 2,-0.6 -3,-0.1 -1,-0.3 0.163 118.4 102.4-103.6 16.3 14.0 32.8 17.5 54 54 A K E < -C 51 0A 131 -3,-2.2 -3,-2.7 2,-0.0 2,-0.4 -0.886 69.5-137.8-106.0 114.5 10.6 32.9 19.2 55 55 A A E +C 50 0A 62 -2,-0.6 -5,-0.3 -5,-0.3 3,-0.1 -0.546 27.8 171.2 -68.5 122.8 9.3 29.5 20.5 56 56 A I E + 0 0 10 -7,-3.2 2,-0.3 -2,-0.4 -6,-0.2 0.524 68.8 30.3-110.4 -10.7 5.7 29.4 19.6 57 57 A I E +C 49 0A 1 -8,-1.7 -8,-2.2 29,-0.0 -1,-0.3 -0.972 50.6 154.7-146.0 132.3 5.2 25.8 20.6 58 58 A N E +C 48 0A 56 -2,-0.3 2,-0.6 -10,-0.2 -10,-0.2 -0.425 25.9 168.1-151.4 67.1 6.9 23.8 23.3 59 59 A S E -C 47 0A 0 -12,-2.2 -12,-2.4 22,-0.0 2,-0.3 -0.762 27.1-146.3 -97.3 116.3 4.4 21.1 24.1 60 60 A T E -C 46 0A 30 -2,-0.6 2,-0.5 -14,-0.2 -14,-0.2 -0.573 23.8-124.9 -76.2 131.6 5.3 18.1 26.2 61 61 A I - 0 0 2 -16,-2.5 -16,-0.3 -2,-0.3 -1,-0.1 -0.669 30.5-170.3 -84.2 127.2 3.3 15.0 25.1 62 62 A T > - 0 0 66 -2,-0.5 3,-2.0 -18,-0.1 49,-0.1 -0.835 36.3-100.2-114.6 158.0 1.4 13.4 27.9 63 63 A P T 3 S+ 0 0 59 0, 0.0 48,-0.1 0, 0.0 44,-0.0 0.691 119.4 33.5 -48.8 -28.1 -0.4 10.1 28.0 64 64 A N T 3 S+ 0 0 151 2,-0.1 2,-0.2 47,-0.0 43,-0.0 0.388 85.6 119.8-113.2 7.4 -3.9 11.5 27.5 65 65 A X < - 0 0 18 -3,-2.0 2,-0.4 42,-0.1 14,-0.1 -0.474 49.5-159.1 -69.6 138.2 -3.1 14.4 25.2 66 66 A T - 0 0 73 -2,-0.2 2,-0.5 12,-0.1 12,-0.5 -0.969 17.9-147.4-133.2 137.9 -4.9 13.9 22.0 67 67 A F - 0 0 25 -2,-0.4 2,-0.5 33,-0.1 10,-0.2 -0.860 19.9-165.2 -99.7 127.2 -4.5 15.2 18.4 68 68 A T E -F 76 0B 72 8,-3.3 8,-2.5 -2,-0.5 2,-0.4 -0.947 16.8-135.0-117.5 129.5 -7.7 15.6 16.5 69 69 A K E +F 75 0B 112 -2,-0.5 6,-0.3 6,-0.2 3,-0.1 -0.669 21.5 179.2 -79.5 133.5 -8.0 16.1 12.7 70 70 A T - 0 0 76 4,-2.9 2,-0.3 -2,-0.4 5,-0.2 0.528 69.6 -5.6-108.0 -22.1 -10.5 19.0 11.9 71 71 A S S S- 0 0 60 3,-1.5 -1,-0.2 22,-0.0 0, 0.0 -0.832 93.4 -79.4-155.2-173.7 -10.3 18.9 8.1 72 72 A Q S S+ 0 0 135 -2,-0.3 24,-0.3 1,-0.2 25,-0.2 0.581 130.9 25.3 -75.4 -7.3 -8.1 17.0 5.7 73 73 A K S S+ 0 0 111 1,-0.1 17,-3.3 23,-0.1 2,-0.4 0.490 112.2 67.4-133.4 -6.4 -5.3 19.5 6.4 74 74 A F E + G 0 89B 29 15,-0.2 -4,-2.9 17,-0.1 -3,-1.5 -0.943 49.8 166.6-124.8 142.9 -5.8 20.9 9.8 75 75 A G E -FG 69 88B 0 13,-1.8 13,-2.9 -2,-0.4 2,-0.3 -0.955 11.3-160.0-146.9 163.5 -5.7 19.4 13.3 76 76 A Q E -FG 68 87B 60 -8,-2.5 -8,-3.3 -2,-0.3 2,-0.3 -0.941 6.8-170.9-143.0 166.9 -5.5 20.5 16.9 77 77 A W E - G 0 86B 2 9,-1.9 9,-2.9 -2,-0.3 2,-0.3 -0.979 26.2-115.3-156.0 149.1 -4.6 19.4 20.5 78 78 A A E - G 0 85B 62 -12,-0.5 2,-0.4 -2,-0.3 7,-0.2 -0.690 24.0-165.3 -89.5 139.3 -5.0 20.8 24.0 79 79 A D E >> - G 0 84B 5 5,-2.7 5,-2.3 -2,-0.3 4,-0.6 -0.944 13.0-174.0-130.4 117.4 -2.0 21.9 26.2 80 80 A S T 45S+ 0 0 118 -2,-0.4 -1,-0.1 3,-0.2 5,-0.0 0.706 83.3 62.7 -78.7 -25.4 -2.2 22.6 30.0 81 81 A R T 45S+ 0 0 129 1,-0.2 -1,-0.2 -21,-0.1 -22,-0.0 0.955 120.8 25.4 -67.9 -41.1 1.3 23.8 30.5 82 82 A A T 45S- 0 0 43 2,-0.1 -2,-0.2 -24,-0.0 -1,-0.2 0.519 106.7-130.8 -96.5 -4.9 0.6 26.8 28.2 83 83 A N T <5 + 0 0 138 -4,-0.6 2,-0.2 1,-0.2 -3,-0.2 0.930 69.2 91.9 53.8 58.3 -3.2 26.6 29.0 84 84 A T E > S- 0 0 34 -19,-0.1 4,-1.8 1,-0.1 3,-0.7 -0.996 72.8-114.0-153.0 157.2 -1.7 18.5 2.3 93 93 A E H 3> S+ 0 0 96 -2,-0.3 4,-3.3 1,-0.2 5,-0.2 0.844 113.9 62.4 -57.8 -34.8 -3.6 15.7 4.0 94 94 A H H 3> S+ 0 0 132 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.898 105.9 45.2 -60.8 -37.0 -0.6 13.4 3.7 95 95 A H H <> S+ 0 0 83 -3,-0.7 4,-2.2 2,-0.2 -1,-0.2 0.885 114.0 47.5 -72.9 -38.7 1.4 15.8 6.0 96 96 A L H X S+ 0 0 3 -4,-1.8 4,-2.4 -24,-0.3 5,-0.2 0.949 113.1 51.8 -63.8 -45.7 -1.5 16.2 8.5 97 97 A S H X S+ 0 0 50 -4,-3.3 4,-1.5 -25,-0.2 -2,-0.2 0.902 110.3 45.8 -57.2 -44.6 -1.8 12.4 8.4 98 98 A K H X S+ 0 0 90 -4,-2.1 4,-2.0 -5,-0.2 -1,-0.2 0.901 111.2 52.7 -69.7 -39.4 1.8 11.7 9.1 99 99 A F H X S+ 0 0 0 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.925 108.7 49.8 -61.1 -44.2 2.0 14.3 11.9 100 100 A A H X S+ 0 0 20 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.826 108.5 54.4 -62.8 -33.9 -1.0 12.7 13.6 101 101 A E H X S+ 0 0 101 -4,-1.5 4,-1.8 -5,-0.2 -1,-0.2 0.930 108.5 47.1 -67.2 -46.8 0.6 9.2 13.4 102 102 A K H X S+ 0 0 41 -4,-2.0 4,-2.0 1,-0.2 5,-0.2 0.881 106.9 59.4 -61.5 -38.6 3.8 10.4 15.1 103 103 A F H X S+ 0 0 2 -4,-2.0 4,-1.0 1,-0.2 -1,-0.2 0.950 104.8 49.2 -54.4 -50.7 1.7 12.0 17.8 104 104 A Q H X S+ 0 0 94 -4,-1.8 4,-1.5 1,-0.2 3,-0.4 0.887 108.1 55.2 -58.4 -41.1 0.1 8.7 18.6 105 105 A E H X S+ 0 0 69 -4,-1.8 4,-1.4 1,-0.2 3,-0.3 0.937 111.3 40.4 -57.8 -52.3 3.5 7.0 18.8 106 106 A F H X S+ 0 0 11 -4,-2.0 4,-1.1 1,-0.2 -61,-0.3 0.572 106.8 65.1 -76.0 -9.8 5.1 9.3 21.4 107 107 A K H X S+ 0 0 31 -4,-1.0 4,-1.7 -3,-0.4 -1,-0.2 0.892 104.4 46.2 -76.3 -38.7 1.9 9.5 23.3 108 108 A E H < S+ 0 0 86 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.1 0.872 107.7 54.8 -69.2 -39.9 2.4 5.8 24.1 109 109 A A H < S+ 0 0 66 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.863 106.8 54.7 -61.6 -34.4 6.0 6.2 25.0 110 110 A A H < 0 0 35 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.908 360.0 360.0 -64.3 -46.1 4.8 8.8 27.5 111 111 A R < 0 0 195 -4,-1.7 -2,-0.2 -49,-0.1 -1,-0.2 0.979 360.0 360.0 -64.1 360.0 2.4 6.3 29.0