==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE (ENDORIBONUCLEASE) 20-FEB-96 1DET . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR K.ISHIKAWA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5529.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 26.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 128 0, 0.0 2,-0.8 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 110.9 38.6 -40.1 28.6 2 2 A a + 0 0 59 1,-0.2 10,-0.2 10,-0.1 3,-0.2 -0.757 360.0 177.7 -91.0 115.3 37.5 -41.3 25.3 3 3 A D S S+ 0 0 82 8,-2.0 2,-0.4 -2,-0.8 9,-0.2 0.880 88.1 13.4 -73.1 -42.1 36.4 -44.8 24.9 4 4 A Y E S-A 11 0A 59 7,-2.8 7,-3.1 -3,-0.1 2,-0.5 -1.000 70.8-160.4-139.7 133.8 35.6 -43.9 21.2 5 5 A T E -A 10 0A 46 -2,-0.4 99,-1.7 5,-0.2 2,-0.6 -0.979 6.9-177.1-121.9 119.8 36.6 -40.8 19.3 6 6 A b E > S-A 9 0A 0 3,-1.9 3,-2.0 -2,-0.5 2,-0.5 -0.920 70.2 -56.3-114.4 93.9 34.7 -39.9 16.2 7 7 A G T 3 S- 0 0 42 -2,-0.6 84,-0.0 1,-0.3 87,-0.0 -0.608 125.0 -17.0 70.7-117.0 36.4 -36.8 14.8 8 8 A S T 3 S+ 0 0 120 -2,-0.5 -1,-0.3 -3,-0.1 2,-0.2 0.603 113.4 110.1 -94.5 -16.0 36.2 -34.4 17.8 9 9 A N E < -A 6 0A 45 -3,-2.0 -3,-1.9 1,-0.0 2,-0.5 -0.454 54.8-151.7 -73.6 135.9 33.6 -36.3 19.7 10 10 A a E -A 5 0A 59 -2,-0.2 2,-0.4 -5,-0.2 -5,-0.2 -0.929 15.4-176.2-108.8 114.2 34.4 -38.2 22.8 11 11 A Y E -A 4 0A 3 -7,-3.1 -7,-2.8 -2,-0.5 -8,-2.0 -0.938 12.1-164.2-120.6 136.9 32.4 -41.2 23.7 12 12 A S > - 0 0 32 -2,-0.4 4,-0.9 -9,-0.2 -10,-0.1 -0.530 38.7-109.4 -98.5 175.5 32.6 -43.3 26.8 13 13 A S H > S+ 0 0 53 -2,-0.2 4,-3.0 2,-0.2 5,-0.1 0.590 119.3 60.2 -89.7 -5.7 30.8 -46.7 26.6 14 14 A S H > S+ 0 0 79 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.927 106.3 49.3 -75.9 -40.6 28.1 -45.6 29.0 15 15 A D H > S+ 0 0 57 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.818 115.8 43.4 -53.8 -41.3 27.4 -43.0 26.4 16 16 A V H X S+ 0 0 2 -4,-0.9 4,-3.1 2,-0.2 5,-0.2 0.883 110.2 54.7 -75.1 -45.9 27.5 -45.9 23.9 17 17 A S H X S+ 0 0 72 -4,-3.0 4,-1.9 1,-0.2 -2,-0.2 0.827 110.0 47.6 -57.9 -41.8 25.4 -48.2 26.0 18 18 A T H X S+ 0 0 74 -4,-2.8 4,-1.5 2,-0.2 -1,-0.2 0.843 112.5 46.6 -68.1 -41.4 22.7 -45.6 26.3 19 19 A A H X S+ 0 0 4 -4,-1.1 4,-1.9 -5,-0.2 3,-0.2 0.962 114.7 49.9 -65.5 -47.5 22.5 -44.8 22.6 20 20 A Q H X S+ 0 0 19 -4,-3.1 4,-2.7 1,-0.2 5,-0.2 0.860 104.1 56.9 -54.8 -47.6 22.6 -48.5 21.8 21 21 A A H X S+ 0 0 53 -4,-1.9 4,-2.0 -5,-0.2 -1,-0.2 0.931 108.3 46.4 -59.1 -43.7 19.8 -49.4 24.2 22 22 A A H X S+ 0 0 28 -4,-1.5 4,-2.0 -3,-0.2 -1,-0.2 0.891 113.4 47.6 -68.1 -39.9 17.3 -47.0 22.6 23 23 A G H X S+ 0 0 0 -4,-1.9 4,-1.9 2,-0.2 -1,-0.2 0.884 112.2 50.7 -64.2 -41.6 18.1 -48.0 19.1 24 24 A Y H X S+ 0 0 43 -4,-2.7 4,-2.0 2,-0.2 -2,-0.2 0.871 107.5 53.6 -62.8 -42.8 17.8 -51.7 20.0 25 25 A Q H X S+ 0 0 131 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.911 111.5 44.4 -58.5 -48.9 14.4 -51.1 21.7 26 26 A L H X>S+ 0 0 32 -4,-2.0 5,-1.8 2,-0.2 4,-1.0 0.880 109.4 56.9 -66.8 -35.1 13.0 -49.5 18.5 27 27 A H H ><5S+ 0 0 37 -4,-1.9 3,-0.8 1,-0.2 -2,-0.2 0.948 108.9 46.9 -56.7 -51.2 14.5 -52.2 16.3 28 28 A E H 3<5S+ 0 0 102 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.850 108.9 54.4 -58.0 -44.0 12.7 -54.9 18.3 29 29 A D H 3<5S- 0 0 93 -4,-1.8 -1,-0.3 -5,-0.1 -2,-0.2 0.575 109.5-120.7 -69.9 -19.0 9.4 -52.9 18.2 30 30 A G T <<5S+ 0 0 72 -4,-1.0 2,-0.3 -3,-0.8 -3,-0.2 0.740 74.7 118.8 80.4 23.3 9.5 -52.7 14.3 31 31 A E < - 0 0 117 -5,-1.8 -1,-0.3 2,-0.0 2,-0.3 -0.821 43.3-166.5-120.2 159.8 9.4 -48.8 14.6 32 32 A T - 0 0 71 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.929 7.8-148.2-137.3 163.6 11.8 -46.1 13.4 33 33 A V B > +B 38 0B 49 5,-2.8 5,-2.0 -2,-0.3 37,-0.2 -0.964 54.0 33.0-135.2 149.9 12.2 -42.3 14.2 34 34 A G T > 5S- 0 0 30 -2,-0.3 3,-1.8 3,-0.2 37,-0.1 0.079 94.5 -74.9 91.3 158.7 13.4 -39.4 12.1 35 35 A S T 3 5S+ 0 0 117 35,-0.4 -1,-0.2 1,-0.3 37,-0.1 0.721 133.5 53.2 -66.1 -16.7 13.2 -38.6 8.4 36 36 A N T 3 5S- 0 0 87 -3,-0.2 -1,-0.3 34,-0.1 -2,-0.2 0.338 108.5-126.1 -96.9 3.1 16.0 -41.2 8.0 37 37 A S T < 5 - 0 0 52 -3,-1.8 -3,-0.2 1,-0.2 -2,-0.1 0.921 34.9-137.6 45.3 71.2 14.1 -44.0 9.8 38 38 A Y B + 0 0 35 3,-0.0 3,-0.9 2,-0.0 -2,-0.0 0.820 48.7 155.7 70.0 44.5 29.0 -53.2 6.1 45 45 A Y T 3 S+ 0 0 194 1,-0.3 54,-0.0 2,-0.1 -3,-0.0 0.809 70.8 62.4 -66.3 -30.8 29.9 -52.1 2.5 46 46 A E T 3 S- 0 0 46 1,-0.0 -1,-0.3 55,-0.0 53,-0.0 0.645 106.4-130.8 -69.8 -22.9 33.0 -50.6 4.1 47 47 A G < + 0 0 55 -3,-0.9 -2,-0.1 1,-0.2 2,-0.1 0.857 36.6 177.4 76.0 36.4 34.2 -54.1 5.2 48 48 A F - 0 0 34 1,-0.1 2,-1.1 53,-0.0 -1,-0.2 -0.420 35.0-120.8 -68.4 150.3 35.0 -53.2 8.9 49 49 A D + 0 0 157 -2,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.769 40.8 174.7 -97.1 84.3 36.1 -56.2 10.9 50 50 A F - 0 0 13 -2,-1.1 38,-0.1 1,-0.2 37,-0.1 -0.704 27.1-148.9 -88.8 147.8 33.5 -56.3 13.6 51 51 A S S S+ 0 0 124 36,-0.4 -1,-0.2 -2,-0.3 36,-0.1 0.957 72.8 88.6 -81.3 -50.3 33.8 -59.3 15.9 52 52 A V S S- 0 0 18 34,-0.3 -2,-0.1 35,-0.2 35,-0.0 0.095 87.7-104.0 -42.3 141.8 30.0 -59.4 16.5 53 53 A S - 0 0 64 1,-0.1 30,-0.2 2,-0.0 29,-0.1 -0.372 49.6 -91.9 -66.0 150.6 27.8 -61.5 14.2 54 54 A S S S+ 0 0 86 27,-0.1 2,-0.2 2,-0.1 27,-0.1 -0.425 82.3 93.0 -89.3 171.2 25.6 -59.7 11.5 55 55 A P - 0 0 37 0, 0.0 27,-0.6 0, 0.0 2,-0.3 0.512 66.0-163.6 -68.2 153.3 22.8 -58.4 10.7 56 56 A Y E -CD 42 81C 25 -14,-0.6 -14,-2.6 -2,-0.2 2,-0.3 -0.871 11.8-166.4-113.4 150.9 24.0 -55.0 11.8 57 57 A Y E -CD 41 80C 31 23,-2.2 23,-2.0 -2,-0.3 2,-0.4 -0.936 11.0-143.1-131.6 144.3 21.8 -52.0 12.5 58 58 A X E +CD 40 79C 52 -18,-2.9 -18,-1.3 -2,-0.3 21,-0.2 -0.918 16.9 178.0-114.7 146.9 22.9 -48.4 12.8 59 59 A W E - D 0 78C 4 19,-2.0 19,-2.8 -2,-0.4 -36,-0.1 -0.991 37.5-101.9-141.3 131.8 21.5 -45.8 15.3 60 60 A P E - D 0 77C 0 0, 0.0 8,-0.6 0, 0.0 2,-0.4 -0.307 26.0-153.5 -62.2 140.5 22.8 -42.2 15.6 61 61 A I B -G 67 0D 8 15,-1.4 2,-0.4 12,-0.3 15,-0.4 -0.965 20.0-135.3-111.6 124.6 25.1 -41.4 18.7 62 62 A L > - 0 0 36 4,-0.6 3,-2.1 -2,-0.4 12,-0.1 -0.810 12.5-150.3 -94.8 126.3 24.8 -37.6 19.7 63 63 A S T 3 S+ 0 0 86 -2,-0.4 -53,-0.2 1,-0.3 -1,-0.1 0.844 98.4 70.1 -60.1 -33.0 27.8 -35.5 20.5 64 64 A S T 3 S- 0 0 80 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.539 112.5-117.4 -58.2 -13.1 25.4 -33.6 22.7 65 65 A G S < S+ 0 0 49 -3,-2.1 2,-0.2 1,-0.4 -1,-0.1 0.166 78.1 126.6 93.0 -18.6 25.2 -36.6 25.2 66 66 A D - 0 0 108 1,-0.1 -4,-0.6 -5,-0.0 -1,-0.4 -0.467 68.5-113.9 -74.8 142.1 21.5 -36.8 24.3 67 67 A V B -G 61 0D 47 -2,-0.2 -6,-0.1 1,-0.1 -1,-0.1 -0.587 45.9 -95.2 -75.2 134.4 19.9 -40.0 23.0 68 68 A Y + 0 0 8 -8,-0.6 -1,-0.1 -2,-0.2 -7,-0.0 -0.288 49.2 172.5 -53.9 127.8 18.8 -39.6 19.4 69 69 A S - 0 0 100 3,-0.1 -35,-0.1 -2,-0.1 -1,-0.1 -0.041 62.2 -66.1-133.6 39.6 15.1 -38.5 19.4 70 70 A G S S+ 0 0 29 -37,-0.2 -35,-0.4 1,-0.2 -36,-0.1 0.422 100.6 90.5 102.2 -1.1 14.3 -37.7 15.8 71 71 A G S S- 0 0 57 1,-0.3 -36,-0.2 -37,-0.1 -1,-0.2 0.284 90.3 -13.8 -98.9-128.3 16.1 -34.7 14.5 72 72 A S - 0 0 96 1,-0.1 -1,-0.3 -38,-0.1 -3,-0.1 -0.559 51.0-149.2 -77.2 133.3 19.6 -34.7 12.8 73 73 A P - 0 0 25 0, 0.0 3,-0.4 0, 0.0 -12,-0.3 0.615 31.7-152.2 -73.9 -14.5 21.5 -38.0 13.1 74 74 A G - 0 0 46 1,-0.2 -12,-0.1 -14,-0.1 17,-0.0 -0.348 39.9 -64.1 70.1-162.2 24.8 -36.0 13.0 75 75 A A S S+ 0 0 30 -14,-0.1 17,-2.0 -69,-0.1 2,-0.3 0.592 106.8 83.3 -95.8 -15.4 27.9 -37.9 11.6 76 76 A D E - E 0 91C 4 -15,-0.4 -15,-1.4 -3,-0.4 2,-0.4 -0.643 50.9-176.7-103.1 147.6 28.2 -40.7 14.2 77 77 A R E -DE 60 90C 6 13,-3.2 13,-2.3 -2,-0.3 2,-0.4 -0.998 23.7-140.8-142.4 152.4 26.6 -43.9 14.7 78 78 A V E -DE 59 89C 0 -19,-2.8 -19,-2.0 -2,-0.4 2,-0.5 -0.813 22.8-157.2 -99.7 134.9 26.4 -46.9 17.0 79 79 A V E +DE 58 88C 0 9,-2.6 8,-2.7 -2,-0.4 9,-1.3 -0.984 20.9 164.8-116.7 136.1 26.3 -50.3 15.1 80 80 A F E -DE 57 86C 0 -23,-2.0 -23,-2.2 -2,-0.5 6,-0.2 -0.889 26.5-125.8-142.7 165.9 24.8 -53.2 17.0 81 81 A N E > -D 56 0C 2 4,-2.2 3,-1.0 -2,-0.3 -25,-0.2 -0.439 37.8 -90.2-107.8-176.1 23.5 -56.7 16.1 82 82 A E T 3 S+ 0 0 66 -27,-0.6 -26,-0.1 1,-0.2 -28,-0.1 0.708 124.1 57.4 -63.2 -26.3 20.2 -58.5 16.7 83 83 A N T 3 S- 0 0 113 -30,-0.2 -1,-0.2 2,-0.1 0, 0.0 0.271 121.8-109.0 -86.6 -0.9 21.4 -60.0 20.0 84 84 A N < + 0 0 52 -3,-1.0 2,-0.4 1,-0.2 -2,-0.2 0.891 68.7 148.5 69.4 47.7 22.0 -56.5 21.1 85 85 A Q - 0 0 80 -32,-0.1 -4,-2.2 -65,-0.0 2,-0.5 -0.893 52.4-110.0-110.1 147.4 25.8 -56.6 21.0 86 86 A L E -E 80 0C 49 -2,-0.4 -34,-0.3 -6,-0.2 -6,-0.3 -0.636 30.9-178.9 -72.6 121.2 27.9 -53.6 20.1 87 87 A A E - 0 0 12 -8,-2.7 -36,-0.4 -2,-0.5 2,-0.3 0.875 54.9 -65.9 -88.8 -46.4 29.6 -54.0 16.8 88 88 A G E -E 79 0C 8 -9,-1.3 -9,-2.6 -38,-0.1 2,-0.4 -0.930 40.1 -98.6 175.0-177.2 31.5 -50.6 16.6 89 89 A V E +E 78 0C 2 14,-0.3 14,-2.7 -2,-0.3 2,-0.3 -0.993 42.3 178.9-130.9 121.1 31.2 -46.9 16.5 90 90 A I E -EF 77 102C 0 -13,-2.3 -13,-3.2 -2,-0.4 2,-0.3 -0.817 7.8-165.1-126.7 167.3 31.6 -45.3 13.1 91 91 A T E -EF 76 101C 3 10,-2.0 10,-2.2 -2,-0.3 -15,-0.2 -0.994 32.5-136.5-152.2 153.4 31.4 -41.8 11.6 92 92 A H S > S+ 0 0 57 -17,-2.0 3,-2.4 -2,-0.3 2,-0.4 0.785 80.9 104.1 -76.0 -29.0 31.2 -39.8 8.4 93 93 A T T 3 S+ 0 0 65 1,-0.3 -86,-0.2 -18,-0.2 8,-0.1 -0.363 92.2 10.0 -55.9 111.1 33.9 -37.5 9.8 94 94 A G T 3 S+ 0 0 76 1,-0.5 2,-0.3 -2,-0.4 -1,-0.3 0.382 106.1 107.6 99.7 -7.9 37.2 -38.4 8.1 95 95 A A < - 0 0 24 -3,-2.4 -1,-0.5 4,-0.2 2,-0.2 -0.720 65.6-127.7-103.4 152.1 35.6 -40.6 5.5 96 96 A S S > S- 0 0 97 -2,-0.3 3,-2.3 -3,-0.1 -1,-0.0 -0.592 70.9 -2.7 -95.5 167.5 35.2 -39.6 1.9 97 97 A G T 3 S- 0 0 83 1,-0.3 -2,-0.1 -2,-0.2 0, 0.0 -0.340 127.8 -39.8 57.1-131.0 32.1 -39.6 -0.2 98 98 A N T 3 S+ 0 0 133 2,-0.1 -1,-0.3 0, 0.0 2,-0.1 -0.042 107.7 118.6-112.1 25.1 29.3 -41.0 1.9 99 99 A N < - 0 0 79 -3,-2.3 2,-0.3 -7,-0.1 -4,-0.2 -0.313 55.2-130.2 -83.8 175.8 31.4 -43.7 3.5 100 100 A F - 0 0 9 -6,-0.1 2,-0.3 -2,-0.1 -8,-0.2 -0.899 9.7-156.7-124.0 146.3 32.2 -44.2 7.2 101 101 A V E -F 91 0C 52 -10,-2.2 -10,-2.0 -2,-0.3 2,-0.2 -0.795 34.8 -97.0-117.7 159.7 35.5 -44.8 9.1 102 102 A E E -F 90 0C 90 -2,-0.3 2,-0.4 -12,-0.2 -12,-0.2 -0.482 32.3-120.7 -79.8 153.9 35.7 -46.4 12.6 103 103 A b 0 0 11 -14,-2.7 -14,-0.3 -2,-0.2 -97,-0.2 -0.867 360.0 360.0 -91.9 137.7 35.9 -44.3 15.8 104 104 A T 0 0 146 -99,-1.7 -1,-0.1 -2,-0.4 -98,-0.1 0.831 360.0 360.0-106.7 360.0 39.0 -45.0 17.8