==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DEFENSIN 18-JAN-91 1DFN . COMPND 2 MOLECULE: DEFENSIN HNP-3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.P.HILL,J.YEE,M.E.SELSTED,D.EISENBERG . 60 2 6 6 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4193.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 48.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A D 0 0 140 0, 0.0 2,-0.4 0, 0.0 33,-0.0 0.000 360.0 360.0 360.0 157.1 27.1 39.1 12.8 2 3 A a - 0 0 43 28,-0.2 2,-0.3 33,-0.1 28,-0.2 -0.865 360.0-165.6-112.6 148.0 25.9 35.7 11.6 3 4 A Y E -A 29 0A 87 26,-2.7 26,-3.3 -2,-0.4 2,-0.5 -0.944 25.0-125.4-134.1 157.9 24.2 35.1 8.3 4 5 A b E -A 28 0A 19 -2,-0.3 2,-0.3 24,-0.2 24,-0.2 -0.885 45.0-177.4-100.0 123.0 22.2 32.5 6.5 5 6 A R E -A 27 0A 59 22,-2.2 22,-2.8 -2,-0.5 14,-0.1 -0.964 18.8-130.9-133.4 150.0 24.1 31.7 3.2 6 7 A I S S+ 0 0 72 -2,-0.3 20,-0.1 20,-0.2 -2,-0.0 -0.982 88.4 7.2-136.1 134.9 23.8 29.7 0.0 7 8 A P S S- 0 0 130 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.989 126.9 -40.5 -86.7 -11.5 25.7 27.9 -1.3 8 9 A A - 0 0 52 19,-0.1 -2,-0.1 -4,-0.0 2,-0.1 -0.967 64.0 -71.3-163.1 173.2 28.3 28.3 1.5 9 10 A c - 0 0 35 -2,-0.3 2,-0.1 -4,-0.1 6,-0.1 -0.430 51.6-130.0 -71.7 152.3 30.0 30.5 4.1 10 11 A I > - 0 0 97 1,-0.2 3,-1.6 -2,-0.1 -1,-0.1 -0.416 42.8 -52.9-101.6 179.7 32.4 33.0 2.7 11 12 A A T 3 S+ 0 0 101 1,-0.3 -1,-0.2 -2,-0.1 3,-0.1 -0.255 125.1 21.6 -54.6 131.9 36.0 33.9 3.6 12 13 A G T 3 S+ 0 0 84 1,-0.3 2,-0.3 -3,-0.1 -1,-0.3 0.564 106.2 94.0 87.2 8.9 36.4 34.7 7.3 13 14 A E < - 0 0 39 -3,-1.6 2,-0.3 -11,-0.0 -1,-0.3 -0.860 56.1-154.3-125.1 158.4 33.3 32.8 8.5 14 15 A R - 0 0 46 16,-2.6 16,-2.4 -2,-0.3 2,-0.5 -0.946 29.2-110.1-130.2 150.2 32.8 29.2 9.7 15 16 A R E +B 29 0A 143 -2,-0.3 14,-0.3 14,-0.2 3,-0.1 -0.735 36.8 171.6 -82.7 129.9 29.5 27.4 9.4 16 17 A Y E - 0 0 116 12,-4.0 37,-0.5 -2,-0.5 2,-0.3 0.488 59.2 -34.6-116.0 -6.8 27.7 26.9 12.8 17 18 A G E -B 28 0A 15 11,-1.3 11,-2.9 35,-0.1 2,-0.3 -0.911 68.4 -75.3-179.8-157.7 24.4 25.5 11.9 18 19 A T E -BC 27 51A 36 33,-1.3 33,-3.3 9,-0.3 2,-0.4 -0.943 25.5-150.5-130.3 146.9 21.5 25.6 9.3 19 20 A b E -BC 26 50A 0 7,-2.5 7,-2.2 -2,-0.3 2,-0.5 -0.898 6.5-149.6-117.7 152.8 18.8 28.0 8.5 20 21 A I E +BC 25 49A 75 29,-2.9 29,-1.9 -2,-0.4 2,-0.3 -0.996 36.8 144.5-116.9 123.2 15.4 27.2 7.0 21 22 A Y E > +BC 24 48A 44 3,-2.3 3,-1.5 -2,-0.5 27,-0.1 -0.898 62.0 3.0-165.2 134.2 14.1 30.0 4.9 22 23 A Q T 3 S- 0 0 139 25,-0.7 3,-0.1 -2,-0.3 26,-0.1 0.781 126.7 -59.8 54.0 41.8 12.0 30.2 1.7 23 24 A G T 3 S+ 0 0 83 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.570 117.3 99.1 66.3 20.5 11.6 26.4 1.6 24 25 A R E < S- B 0 21A 146 -3,-1.5 -3,-2.3 0, 0.0 2,-0.3 -0.905 72.9-113.3-131.6 164.9 15.4 25.8 1.4 25 26 A L E - B 0 20A 123 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.708 32.0-173.3 -95.3 136.6 18.4 25.0 3.7 26 27 A W E - B 0 19A 57 -7,-2.2 -7,-2.5 -2,-0.3 2,-0.4 -0.900 29.0-112.5-127.5 152.5 21.1 27.7 4.3 27 28 A A E -AB 5 18A 7 -22,-2.8 -22,-2.2 -2,-0.3 2,-0.7 -0.711 27.0-135.7 -81.2 138.1 24.4 27.4 6.1 28 29 A F E -AB 4 17A 7 -11,-2.9 -12,-4.0 -2,-0.4 -11,-1.3 -0.890 33.9-173.3 -95.2 120.8 24.4 29.5 9.3 29 30 A c E AB 3 15A 0 -26,-3.3 -26,-2.7 -2,-0.7 -14,-0.2 -0.945 360.0 360.0-123.3 140.3 27.7 31.3 9.2 30 31 A a 0 0 56 -16,-2.4 -16,-2.6 -2,-0.4 -28,-0.2 -0.932 360.0 360.0-138.8 360.0 29.6 33.4 11.7 31 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 2 B D 0 0 135 0, 0.0 2,-0.4 0, 0.0 28,-0.0 0.000 360.0 360.0 360.0 173.5 18.1 42.5 6.2 33 3 B d + 0 0 29 28,-0.2 2,-0.3 -29,-0.1 28,-0.2 -0.822 360.0 178.6-101.9 140.1 17.4 39.2 8.0 34 4 B Y E -D 60 0A 59 26,-2.6 26,-3.0 -2,-0.4 2,-0.4 -0.962 32.3-117.8-137.0 148.1 18.6 38.2 11.4 35 5 B e E -D 59 0A 31 -2,-0.3 2,-0.4 24,-0.3 24,-0.3 -0.731 44.2-169.8 -81.8 128.4 18.2 35.2 13.8 36 6 B R E -D 58 0A 69 22,-3.6 22,-2.2 -2,-0.4 4,-0.1 -0.972 13.0-120.2-132.8 147.5 16.5 36.4 16.9 37 7 B I S S- 0 0 130 -2,-0.4 20,-0.1 20,-0.2 4,-0.0 -0.971 88.6 -3.5-131.9 137.2 15.7 35.2 20.4 38 8 B P S S- 0 0 125 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.974 128.7 -41.6 -82.7 -16.1 13.2 34.8 21.8 39 9 B A S S- 0 0 57 19,-0.1 -2,-0.1 -4,-0.1 2,-0.1 -0.947 77.1 -50.1-158.7 178.2 11.3 36.2 18.8 40 10 B f - 0 0 39 -2,-0.3 3,-0.1 -4,-0.1 6,-0.1 -0.340 53.2-120.3 -65.4 141.6 11.2 38.9 16.2 41 11 B I > - 0 0 99 1,-0.2 3,-1.5 -2,-0.1 -1,-0.1 -0.100 51.6 -63.8 -71.1 162.9 11.8 42.6 17.2 42 12 B A T 3 S+ 0 0 101 1,-0.3 -1,-0.2 3,-0.0 3,-0.1 -0.412 124.1 18.6 -59.0 131.4 9.1 45.3 16.4 43 13 B G T 3 S+ 0 0 87 1,-0.4 2,-0.3 -3,-0.1 -1,-0.3 0.596 104.2 102.1 82.3 15.9 8.5 45.8 12.7 44 14 B E < - 0 0 41 -3,-1.5 -1,-0.4 -4,-0.0 2,-0.3 -0.842 56.7-147.9-125.3 159.9 10.1 42.4 11.6 45 15 B R - 0 0 93 16,-2.3 16,-2.7 -2,-0.3 2,-0.6 -0.939 21.9-111.4-130.9 151.7 8.3 39.2 10.6 46 16 B R E + E 0 60A 140 -2,-0.3 14,-0.3 14,-0.2 3,-0.1 -0.799 40.9 159.9 -86.5 116.4 9.3 35.6 11.1 47 17 B Y E - 0 0 131 12,-2.3 -25,-0.7 -2,-0.6 2,-0.3 0.313 63.0 -21.0-116.4 -3.8 10.2 34.0 7.8 48 18 B G E -CE 21 59A 9 11,-1.4 11,-2.5 -27,-0.1 2,-0.3 -0.923 64.2 -89.2-174.7-162.6 12.3 31.0 9.0 49 19 B T E -CE 20 58A 27 -29,-1.9 -29,-2.9 -2,-0.3 2,-0.5 -0.992 14.8-148.5-140.2 143.0 14.4 29.4 11.7 50 20 B e E -CE 19 57A 0 7,-2.5 7,-3.2 -2,-0.3 2,-0.6 -0.951 17.1-156.1-113.1 127.8 18.1 29.3 12.5 51 21 B I E +CE 18 56A 55 -33,-3.3 -33,-1.3 -2,-0.5 2,-0.4 -0.953 21.3 162.8-108.2 121.8 19.2 26.1 14.1 52 22 B Y E > - E 0 55A 74 3,-2.5 3,-3.0 -2,-0.6 -35,-0.1 -0.988 67.8 -24.5-142.8 124.7 22.4 26.2 16.3 53 23 B Q T 3 S- 0 0 140 -37,-0.5 3,-0.1 -2,-0.4 -1,-0.1 0.856 125.8 -46.1 40.3 56.2 23.4 23.5 18.8 54 24 B G T 3 S+ 0 0 79 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.322 115.9 113.6 73.7 -5.5 19.9 22.1 19.3 55 25 B R E < - E 0 52A 155 -3,-3.0 -3,-2.5 2,-0.0 2,-0.5 -0.773 56.3-146.2 -98.6 147.1 18.4 25.6 19.7 56 26 B L E - E 0 51A 116 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.969 17.1-172.7-112.9 118.6 15.9 27.1 17.3 57 27 B W E - E 0 50A 55 -7,-3.2 -7,-2.5 -2,-0.5 2,-0.3 -0.754 30.5-103.9-106.0 153.0 16.0 30.9 16.7 58 28 B A E -DE 36 49A 3 -22,-2.2 -22,-3.6 -2,-0.3 2,-0.7 -0.621 23.5-142.9 -74.4 134.8 13.5 33.0 14.8 59 29 B F E -DE 35 48A 11 -11,-2.5 -12,-2.3 -2,-0.3 -11,-1.4 -0.957 31.3-172.1-101.5 111.0 14.8 34.1 11.3 60 30 B f E DE 34 46A 0 -26,-3.0 -26,-2.6 -2,-0.7 -14,-0.2 -0.958 360.0 360.0-116.2 134.9 13.3 37.6 11.1 61 31 B d 0 0 52 -16,-2.7 -16,-2.3 -2,-0.4 -28,-0.2 -0.869 360.0 360.0-122.2 360.0 13.2 40.1 8.3