==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 21-NOV-99 1DFU . COMPND 2 MOLECULE: 5S RRNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.LU,T.A.STEITZ . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6042.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 70.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 26.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 P M 0 0 155 0, 0.0 2,-0.5 0, 0.0 60,-0.1 0.000 360.0 360.0 360.0 139.6 15.8 5.4 -23.5 2 2 P F - 0 0 24 58,-0.4 60,-2.5 54,-0.0 2,-0.5 -0.748 360.0-165.0 -87.3 131.0 17.5 7.1 -20.5 3 3 P T E -a 62 0A 73 -2,-0.5 2,-0.5 58,-0.2 60,-0.2 -0.978 4.9-171.7-120.1 120.8 16.4 5.6 -17.2 4 4 P I E -a 63 0A 1 58,-3.2 60,-3.8 -2,-0.5 2,-0.5 -0.945 12.5-146.4-114.9 128.9 17.1 7.6 -14.1 5 5 P N E +a 64 0A 114 -2,-0.5 38,-0.5 58,-0.2 2,-0.3 -0.807 29.6 162.1 -96.4 134.1 16.6 6.2 -10.6 6 6 P A - 0 0 12 58,-2.8 60,-0.4 -2,-0.5 2,-0.3 -0.923 27.6-142.4-144.2 168.8 15.5 8.7 -7.9 7 7 P E E -C 41 0B 116 34,-1.3 34,-1.9 -2,-0.3 2,-0.2 -0.953 32.9-102.2-132.5 150.7 14.0 9.0 -4.5 8 8 P V E -C 40 0B 72 -2,-0.3 32,-0.3 32,-0.2 2,-0.1 -0.518 44.8-110.2 -72.2 138.1 11.6 11.5 -3.0 9 9 P R - 0 0 28 30,-2.7 30,-0.1 -2,-0.2 3,-0.1 -0.458 20.2-161.6 -71.3 140.7 13.3 14.1 -0.8 10 10 P K S S+ 0 0 194 1,-0.2 2,-0.3 -2,-0.1 -1,-0.1 0.628 79.0 22.7 -93.1 -18.4 12.6 13.8 2.9 11 11 P E - 0 0 96 2,-0.1 2,-0.3 5,-0.0 -1,-0.2 -0.971 67.2-165.0-145.6 157.5 13.8 17.4 3.5 12 12 P Q + 0 0 134 -2,-0.3 4,-0.4 -3,-0.1 3,-0.1 -0.828 37.3 68.8-137.2 173.9 14.3 20.6 1.4 13 13 P G S > S- 0 0 42 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 -0.373 91.1 -53.2 105.7 174.4 16.1 23.9 1.7 14 14 P K H > S+ 0 0 154 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.941 131.5 48.3 -53.1 -56.9 19.7 25.1 1.6 15 15 P G H > S+ 0 0 41 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.924 113.9 45.2 -52.0 -52.2 20.9 22.9 4.4 16 16 P A H > S+ 0 0 3 -4,-0.4 4,-2.0 1,-0.2 -1,-0.2 0.898 112.7 51.6 -61.2 -42.4 19.4 19.7 3.0 17 17 P S H X S+ 0 0 15 -4,-2.4 4,-2.1 1,-0.2 -1,-0.2 0.907 108.9 49.8 -62.8 -42.5 20.6 20.4 -0.5 18 18 P R H X S+ 0 0 166 -4,-2.6 4,-1.9 -5,-0.2 -1,-0.2 0.888 107.6 55.6 -65.2 -36.3 24.2 21.0 0.7 19 19 P R H X S+ 0 0 139 -4,-2.0 4,-1.0 -5,-0.2 -1,-0.2 0.936 106.8 50.2 -59.9 -46.8 24.0 17.7 2.6 20 20 P L H ><>S+ 0 0 19 -4,-2.0 5,-2.2 1,-0.2 3,-0.9 0.936 111.2 47.7 -55.9 -50.4 23.1 15.8 -0.6 21 21 P R H ><5S+ 0 0 73 -4,-2.1 3,-1.1 1,-0.3 -1,-0.2 0.800 108.0 54.4 -63.9 -30.7 25.9 17.3 -2.6 22 22 P A H 3<5S+ 0 0 89 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.687 108.1 53.6 -75.3 -16.9 28.5 16.5 0.1 23 23 P A T <<5S- 0 0 55 -4,-1.0 -1,-0.2 -3,-0.9 -2,-0.2 0.039 125.9 -97.0-105.3 24.2 27.2 13.0 -0.1 24 24 P N T < 5S+ 0 0 110 -3,-1.1 20,-1.7 1,-0.3 21,-0.4 0.757 95.3 93.7 69.8 25.9 27.7 12.5 -3.9 25 25 P K E < -D 43 0B 49 -5,-2.2 -1,-0.3 18,-0.2 18,-0.2 -0.792 54.6-155.6-135.5 176.5 24.1 13.3 -4.8 26 26 P F E -D 42 0B 0 16,-1.7 16,-2.9 -2,-0.2 2,-0.1 -0.990 20.1-105.2-156.0 155.6 22.2 16.4 -5.8 27 27 P P E +D 41 0B 1 0, 0.0 62,-0.7 0, 0.0 2,-0.3 -0.473 33.8 172.2 -83.2 156.1 18.6 17.7 -5.8 28 28 P A E -De 40 89B 2 12,-2.3 12,-2.1 60,-0.2 2,-0.4 -0.939 18.9-137.1-151.8 167.9 16.2 18.0 -8.7 29 29 P I E -De 39 90B 36 60,-2.2 62,-3.0 -2,-0.3 2,-0.5 -0.994 1.6-155.3-137.1 141.2 12.5 18.9 -9.3 30 30 P I E +De 38 91B 0 8,-1.9 8,-2.7 -2,-0.4 2,-0.3 -0.975 30.8 154.7-114.3 124.6 9.8 17.4 -11.4 31 31 P Y E + e 0 92B 69 60,-2.3 62,-2.6 -2,-0.5 2,-0.1 -0.896 13.3 87.1-142.5 172.4 7.0 19.8 -12.4 32 32 P G + 0 0 27 3,-0.3 3,-0.3 1,-0.3 62,-0.1 -0.172 63.8 39.3 114.4 151.8 4.3 20.3 -15.0 33 33 P G S S- 0 0 78 1,-0.2 -1,-0.3 60,-0.1 61,-0.0 -0.298 105.9 -49.4 76.9-160.6 0.8 19.1 -15.6 34 34 P K S S+ 0 0 207 -3,-0.1 -1,-0.2 2,-0.1 -2,-0.0 0.747 107.3 91.1 -86.9 -26.8 -1.9 18.7 -12.9 35 35 P E S S- 0 0 134 -3,-0.3 -3,-0.3 1,-0.1 3,-0.1 -0.335 86.9-101.9 -68.5 153.0 0.1 16.6 -10.4 36 36 P A - 0 0 75 1,-0.1 -1,-0.1 -5,-0.1 -2,-0.1 -0.343 49.0 -83.2 -72.0 157.8 2.0 18.6 -7.7 37 37 P P - 0 0 88 0, 0.0 2,-0.5 0, 0.0 -6,-0.2 -0.259 41.4-143.0 -60.1 149.0 5.7 19.1 -8.1 38 38 P L E - D 0 30B 36 -8,-2.7 -8,-1.9 -3,-0.1 2,-0.5 -0.954 4.5-150.6-122.6 113.1 7.9 16.2 -6.9 39 39 P A E + D 0 29B 14 -2,-0.5 -30,-2.7 -10,-0.2 2,-0.2 -0.716 28.3 172.5 -84.3 122.6 11.2 17.1 -5.2 40 40 P I E -CD 8 28B 0 -12,-2.1 -12,-2.3 -2,-0.5 2,-0.4 -0.764 27.7-134.1-128.3 169.7 13.7 14.3 -5.8 41 41 P E E -CD 7 27B 34 -34,-1.9 -34,-1.3 -2,-0.2 2,-0.3 -0.981 21.8-162.8-127.2 141.6 17.4 13.4 -5.2 42 42 P L E - D 0 26B 1 -16,-2.9 -16,-1.7 -2,-0.4 2,-0.6 -0.813 29.3-103.7-124.4 161.3 19.8 11.9 -7.7 43 43 P D E > - D 0 25B 64 -38,-0.5 4,-1.9 -2,-0.3 5,-0.3 -0.743 34.4-148.4 -81.7 118.8 23.1 10.0 -7.9 44 44 P H H > S+ 0 0 7 -20,-1.7 4,-2.9 -2,-0.6 5,-0.2 0.960 87.9 42.9 -53.8 -64.9 25.5 12.7 -9.1 45 45 P D H > S+ 0 0 91 -21,-0.4 4,-2.2 1,-0.2 5,-0.2 0.880 113.2 51.5 -53.1 -45.9 28.0 10.6 -11.1 46 46 P K H > S+ 0 0 135 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.958 115.5 40.6 -59.5 -50.9 25.5 8.4 -12.8 47 47 P V H X S+ 0 0 3 -4,-1.9 4,-3.2 1,-0.2 -1,-0.2 0.887 111.5 57.9 -65.5 -37.9 23.4 11.3 -14.1 48 48 P M H < S+ 0 0 37 -4,-2.9 4,-0.3 -5,-0.3 -1,-0.2 0.905 108.6 45.5 -58.8 -42.1 26.5 13.3 -15.0 49 49 P N H >< S+ 0 0 116 -4,-2.2 3,-1.0 -5,-0.2 4,-0.3 0.914 113.4 51.1 -67.0 -42.2 27.7 10.5 -17.3 50 50 P M H >< S+ 0 0 43 -4,-2.0 3,-1.6 1,-0.2 6,-0.3 0.938 108.3 49.9 -58.8 -50.9 24.2 10.2 -18.8 51 51 P Q T 3< S+ 0 0 21 -4,-3.2 -1,-0.2 1,-0.3 -2,-0.2 0.459 88.8 83.3 -71.8 0.7 23.9 13.9 -19.5 52 52 P A T < S+ 0 0 75 -3,-1.0 2,-0.5 -4,-0.3 -1,-0.3 0.752 79.6 78.2 -72.9 -22.9 27.3 13.9 -21.2 53 53 P K S X S- 0 0 118 -3,-1.6 3,-2.1 -4,-0.3 4,-0.3 -0.756 85.6-134.9 -88.7 130.1 25.4 12.7 -24.3 54 54 P A G > S+ 0 0 80 -2,-0.5 3,-1.5 1,-0.3 4,-0.2 0.750 100.7 69.6 -55.5 -28.3 23.5 15.4 -26.1 55 55 P E G >> S+ 0 0 82 1,-0.3 4,-2.7 2,-0.2 3,-1.5 0.744 80.7 77.1 -63.7 -22.3 20.4 13.3 -26.4 56 56 P F G <4 S+ 0 0 0 -3,-2.1 18,-0.5 -6,-0.3 -1,-0.3 0.840 98.9 43.7 -56.6 -31.5 19.9 13.7 -22.7 57 57 P Y G <4 S+ 0 0 77 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.429 119.8 38.4 -96.7 2.9 18.6 17.1 -23.4 58 58 P S T <4 S+ 0 0 77 -3,-1.5 -2,-0.2 -4,-0.2 -3,-0.1 0.662 100.1 79.5-119.4 -29.2 16.4 16.4 -26.4 59 59 P E S < S- 0 0 74 -4,-2.7 2,-0.6 1,-0.1 15,-0.4 -0.323 83.4-107.9 -82.7 161.6 14.8 13.0 -25.5 60 60 P V - 0 0 62 13,-0.1 -58,-0.4 -2,-0.1 13,-0.2 -0.804 45.5-156.0 -85.5 125.2 11.9 12.1 -23.2 61 61 P L B -F 72 0B 0 11,-3.5 11,-2.4 -2,-0.6 2,-0.5 -0.605 10.6-129.6-102.5 163.2 13.6 10.5 -20.2 62 62 P T E -a 3 0A 2 -60,-2.5 -58,-3.2 9,-0.2 2,-0.6 -0.960 16.5-165.5-117.7 120.0 12.2 8.0 -17.7 63 63 P I E -a 4 0A 0 -2,-0.5 7,-1.4 -60,-0.2 2,-0.8 -0.915 8.1-153.8-105.9 124.1 12.7 8.7 -14.0 64 64 P V E +aB 5 69A 36 -60,-3.8 -58,-2.8 -2,-0.6 2,-0.3 -0.860 30.9 152.6 -99.9 105.4 12.0 5.8 -11.7 65 65 P V E > - B 0 68A 1 3,-1.5 3,-1.3 -2,-0.8 2,-0.4 -0.903 64.5 -7.9-127.3 155.9 11.0 7.1 -8.3 66 66 P D T 3 S- 0 0 136 -60,-0.4 -2,-0.0 -2,-0.3 3,-0.0 -0.411 126.2 -49.8 57.7-113.3 8.8 5.3 -5.8 67 67 P G T 3 S+ 0 0 63 -2,-0.4 -1,-0.2 2,-0.0 2,-0.2 0.408 117.7 72.2-133.8 -3.2 7.7 2.3 -7.9 68 68 P K E < S-B 65 0A 110 -3,-1.3 -3,-1.5 -5,-0.0 2,-0.3 -0.702 74.0-114.8-116.1 167.4 6.5 3.9 -11.2 69 69 P E E -B 64 0A 129 -2,-0.2 -5,-0.2 -5,-0.2 -7,-0.1 -0.756 20.9-167.5 -97.9 145.2 8.0 5.7 -14.2 70 70 P I - 0 0 27 -7,-1.4 24,-0.3 -2,-0.3 -8,-0.1 0.783 19.0-138.6-108.8 -29.7 7.3 9.3 -14.9 71 71 P K + 0 0 66 -8,-0.1 23,-2.5 22,-0.1 2,-0.3 0.874 36.3 157.2 67.4 105.0 8.4 10.4 -18.4 72 72 P V E -FG 61 93B 0 -11,-2.4 -11,-3.5 21,-0.3 2,-0.3 -0.856 35.0-130.4-146.7 176.4 10.0 13.9 -18.5 73 73 P K E - G 0 92B 92 19,-1.8 19,-2.6 -2,-0.3 2,-0.4 -0.975 37.6-100.9-133.7 147.1 12.3 16.1 -20.4 74 74 P A E + G 0 91B 16 -18,-0.5 17,-0.2 -15,-0.4 3,-0.1 -0.574 42.1 173.8 -69.1 124.1 15.3 18.1 -19.1 75 75 P Q E - 0 0 111 15,-2.8 2,-0.3 -2,-0.4 16,-0.2 0.664 60.2 -7.8-105.7 -25.9 14.0 21.6 -18.7 76 76 P D E - G 0 90B 79 14,-1.4 14,-2.5 2,-0.0 -1,-0.4 -0.968 54.5-156.8-168.3 153.5 17.0 23.3 -17.0 77 77 P V E - G 0 89B 32 -2,-0.3 2,-0.5 12,-0.2 12,-0.2 -0.998 5.9-155.5-142.4 136.9 20.3 22.5 -15.3 78 78 P Q E - G 0 88B 87 10,-2.8 9,-3.0 -2,-0.4 10,-1.6 -0.961 18.7-164.8-110.7 122.6 22.4 24.4 -12.8 79 79 P R E - G 0 86B 149 -2,-0.5 7,-0.2 7,-0.2 -2,-0.0 -0.776 33.3 -86.7-107.9 152.6 26.1 23.6 -12.9 80 80 P H - 0 0 53 5,-2.6 5,-0.1 3,-0.3 -1,-0.1 -0.267 36.7-122.9 -56.7 139.8 28.7 24.3 -10.3 81 81 P P S S- 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.855 101.6 -0.4 -52.0 -41.5 30.3 27.8 -10.7 82 82 P Y S S+ 0 0 188 1,-0.0 -2,-0.1 3,-0.0 -3,-0.0 0.209 118.1 77.8-139.5 18.5 33.8 26.4 -11.0 83 83 P K S S- 0 0 107 2,-0.2 2,-2.7 -3,-0.0 -3,-0.3 -0.971 81.6-112.2-131.8 146.7 33.6 22.6 -10.7 84 84 P P S S+ 0 0 122 0, 0.0 2,-0.3 0, 0.0 -5,-0.0 -0.378 79.7 110.5 -73.1 65.3 32.6 19.9 -13.2 85 85 P K - 0 0 72 -2,-2.7 -5,-2.6 -5,-0.1 2,-0.5 -0.972 69.6-115.8-141.7 156.1 29.5 19.0 -11.2 86 86 P L E - G 0 79B 4 -2,-0.3 -7,-0.2 -7,-0.2 3,-0.1 -0.793 23.7-178.4 -92.6 130.0 25.7 19.2 -11.5 87 87 P Q E - 0 0 59 -9,-3.0 2,-0.3 -2,-0.5 -8,-0.2 0.812 63.9 -19.6 -95.1 -39.3 24.1 21.4 -8.8 88 88 P H E - G 0 78B 35 -10,-1.6 -10,-2.8 -62,-0.1 -1,-0.4 -0.980 53.4-151.6-166.4 156.1 20.4 20.9 -9.7 89 89 P I E -eG 28 77B 0 -62,-0.7 -60,-2.2 -2,-0.3 2,-0.5 -0.999 7.4-148.8-140.7 137.7 18.1 19.9 -12.5 90 90 P D E -eG 29 76B 28 -14,-2.5 -15,-2.8 -2,-0.4 -14,-1.4 -0.903 16.8-167.4-101.2 133.1 14.5 20.8 -13.5 91 91 P F E -eG 30 74B 0 -62,-3.0 -60,-2.3 -2,-0.5 2,-0.5 -0.979 6.3-153.3-121.1 132.8 12.5 18.1 -15.2 92 92 P V E -eG 31 73B 39 -19,-2.6 -19,-1.8 -2,-0.4 -60,-0.2 -0.908 25.9-110.4-108.6 132.2 9.2 18.9 -16.9 93 93 P R E G 0 72B 56 -62,-2.6 -21,-0.3 -2,-0.5 -22,-0.1 -0.276 360.0 360.0 -58.1 140.6 6.6 16.1 -17.2 94 94 P A 0 0 98 -23,-2.5 -1,-0.0 -24,-0.3 -21,-0.0 -0.745 360.0 360.0-123.2 360.0 6.0 14.9 -20.8